data_6IK # _chem_comp.id 6IK _chem_comp.name "4-[[(3S)-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-N-[[(3S)-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H42 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-28 _chem_comp.pdbx_modified_date 2021-10-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.736 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6IK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OEH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6IK C10 C1 C 0 1 N N N 43.346 -28.377 20.932 6.985 -0.581 -0.790 C10 6IK 1 6IK C13 C2 C 0 1 N N N 41.118 -26.285 20.831 9.041 2.202 -0.849 C13 6IK 2 6IK C15 C3 C 0 1 N N N 40.363 -26.442 19.511 9.179 2.049 -2.365 C15 6IK 3 6IK C17 C4 C 0 1 N N N 42.377 -25.459 23.818 8.525 2.610 2.033 C17 6IK 4 6IK C20 C5 C 0 1 N N N 43.651 -27.202 22.684 7.380 0.275 1.451 C20 6IK 5 6IK C21 C6 C 0 1 Y N N 42.361 -30.782 21.721 4.847 -0.134 -2.012 C21 6IK 6 6IK C22 C7 C 0 1 Y N N 42.632 -32.213 22.235 3.481 -0.265 -2.157 C22 6IK 7 6IK C24 C8 C 0 1 N N N 45.330 -35.046 26.837 -1.104 -2.162 1.867 C24 6IK 8 6IK C26 C9 C 0 1 N N N 43.109 -35.697 27.967 -3.314 -1.011 1.718 C26 6IK 9 6IK C02 C10 C 0 1 N N S 45.063 -36.009 25.784 -1.414 -2.848 0.534 C02 6IK 10 6IK C03 C11 C 0 1 N N N 45.850 -35.577 24.471 -0.865 -2.002 -0.616 C03 6IK 11 6IK C05 C12 C 0 1 N N N 44.433 -34.079 22.987 1.287 -1.146 -1.372 C05 6IK 12 6IK C06 C13 C 0 1 Y N N 44.079 -32.668 22.476 2.751 -1.001 -1.222 C06 6IK 13 6IK C07 C14 C 0 1 Y N N 45.241 -31.712 22.204 3.408 -1.599 -0.146 C07 6IK 14 6IK C08 C15 C 0 1 Y N N 44.961 -30.309 21.681 4.774 -1.459 -0.012 C08 6IK 15 6IK C09 C16 C 0 1 Y N N 43.536 -29.828 21.442 5.493 -0.729 -0.942 C09 6IK 16 6IK C12 C17 C 0 1 N N S 42.610 -26.459 21.213 8.723 0.944 -0.038 C12 6IK 17 6IK C14 C18 C 0 1 N N N 40.518 -25.050 20.140 10.421 2.289 -1.504 C14 6IK 18 6IK C16 C19 C 0 1 N N N 42.933 -25.970 22.482 8.603 1.193 1.467 C16 6IK 19 6IK C18 C20 C 0 1 N N N 42.788 -24.038 23.415 10.015 2.455 2.390 C18 6IK 20 6IK C19 C21 C 0 1 N N N 43.692 -24.636 22.332 9.778 0.934 2.410 C19 6IK 21 6IK C25 C22 C 0 1 N N N 44.575 -35.223 28.078 -1.810 -0.804 1.910 C25 6IK 22 6IK C27 C23 C 0 1 N N N 43.555 -36.147 25.464 -2.930 -2.996 0.382 C27 6IK 23 6IK C29 C24 C 0 1 Y N N 41.838 -37.649 26.751 -4.917 -1.754 0.164 C29 6IK 24 6IK C31 C25 C 0 1 Y N N 40.309 -39.220 28.052 -6.777 -3.024 -0.325 C31 6IK 25 6IK C33 C26 C 0 1 Y N N 40.697 -39.624 25.573 -7.064 -0.747 -0.118 C33 6IK 26 6IK C35 C27 C 0 1 N N N 41.383 -39.999 23.246 -7.342 1.695 0.121 C35 6IK 27 6IK C36 C28 C 0 1 Y N N 42.069 -41.237 22.641 -8.443 2.721 0.037 C36 6IK 28 6IK C37 C29 C 0 1 Y N N 41.702 -41.675 21.221 -9.167 3.052 1.167 C37 6IK 29 6IK C38 C30 C 0 1 Y N N 42.387 -42.895 20.596 -10.177 3.993 1.090 C38 6IK 30 6IK C39 C31 C 0 1 Y N N 43.441 -43.661 21.405 -10.463 4.602 -0.117 C39 6IK 31 6IK C40 C32 C 0 1 Y N N 43.811 -43.217 22.828 -9.739 4.272 -1.247 C40 6IK 32 6IK C41 C33 C 0 1 Y N N 43.126 -42.004 23.447 -8.726 3.334 -1.169 C41 6IK 33 6IK C42 C34 C 0 1 Y N N 41.603 -38.436 25.510 -5.706 -0.609 0.153 C42 6IK 34 6IK N04 N1 N 0 1 N N N 45.490 -34.230 23.998 0.585 -1.857 -0.468 N04 6IK 35 6IK N11 N2 N 0 1 N N N 42.825 -27.780 21.711 7.279 0.614 0.012 N11 6IK 36 6IK N28 N3 N 0 1 N N N 42.715 -36.471 26.700 -3.559 -1.669 0.429 N28 6IK 37 6IK N30 N4 N 0 1 Y N N 41.198 -38.028 27.999 -5.486 -2.934 -0.078 N30 6IK 38 6IK N32 N5 N 0 1 Y N N 40.052 -40.010 26.817 -7.558 -1.963 -0.344 N32 6IK 39 6IK N34 N6 N 0 1 N N N 40.496 -40.377 24.349 -7.894 0.364 -0.141 N34 6IK 40 6IK O01 O1 O 0 1 N N N 45.560 -37.280 26.145 -0.803 -4.140 0.509 O01 6IK 41 6IK O23 O2 O 0 1 N N N 43.878 -35.038 22.563 0.718 -0.625 -2.311 O23 6IK 42 6IK H1 H1 H 0 1 N N N 44.329 -27.930 20.722 7.388 -1.462 -0.291 H1 6IK 43 6IK H2 H2 H 0 1 N N N 42.743 -28.387 20.012 7.442 -0.479 -1.774 H2 6IK 44 6IK H3 H3 H 0 1 N N N 40.479 -26.594 21.672 8.601 3.126 -0.474 H3 6IK 45 6IK H4 H4 H 0 1 N N N 40.911 -26.693 18.591 9.043 1.052 -2.784 H4 6IK 46 6IK H5 H5 H 0 1 N N N 39.378 -26.932 19.496 8.831 2.873 -2.988 H5 6IK 47 6IK H6 H6 H 0 1 N N N 41.293 -25.599 23.941 8.333 3.373 1.278 H6 6IK 48 6IK H7 H7 H 0 1 N N N 42.900 -25.847 24.704 7.873 2.699 2.902 H7 6IK 49 6IK H8 H8 H 0 1 N N N 44.716 -27.160 22.414 7.613 -0.772 1.642 H8 6IK 50 6IK H9 H9 H 0 1 N N N 43.545 -27.634 23.690 6.546 0.643 2.049 H9 6IK 51 6IK H10 H10 H 0 1 N N N 41.346 -30.451 21.557 5.414 0.431 -2.737 H10 6IK 52 6IK H11 H11 H 0 1 N N N 41.811 -32.888 22.423 2.979 0.200 -2.992 H11 6IK 53 6IK H12 H12 H 0 1 N N N 46.400 -35.106 27.083 -1.460 -2.784 2.689 H12 6IK 54 6IK H13 H13 H 0 1 N N N 45.100 -34.045 26.443 -0.027 -2.016 1.960 H13 6IK 55 6IK H14 H14 H 0 1 N N N 42.906 -36.349 28.829 -3.700 -1.635 2.524 H14 6IK 56 6IK H15 H15 H 0 1 N N N 42.468 -34.805 28.023 -3.818 -0.044 1.734 H15 6IK 57 6IK H16 H16 H 0 1 N N N 46.928 -35.595 24.687 -1.087 -2.491 -1.565 H16 6IK 58 6IK H17 H17 H 0 1 N N N 45.624 -36.300 23.674 -1.332 -1.017 -0.597 H17 6IK 59 6IK H18 H18 H 0 1 N N N 46.257 -32.031 22.382 2.849 -2.169 0.581 H18 6IK 60 6IK H19 H19 H 0 1 N N N 45.787 -29.644 21.476 5.284 -1.921 0.821 H19 6IK 61 6IK H20 H20 H 0 1 N N N 43.292 -26.156 20.405 9.361 0.099 -0.294 H20 6IK 62 6IK H21 H21 H 0 1 N N N 39.646 -24.543 20.578 10.889 3.272 -1.561 H21 6IK 63 6IK H22 H22 H 0 1 N N N 41.179 -24.305 19.673 11.102 1.451 -1.357 H22 6IK 64 6IK H23 H23 H 0 1 N N N 41.964 -23.421 23.027 10.689 2.782 1.599 H23 6IK 65 6IK H24 H24 H 0 1 N N N 43.325 -23.483 24.198 10.274 2.869 3.365 H24 6IK 66 6IK H25 H25 H 0 1 N N N 44.756 -24.686 22.606 9.479 0.550 3.385 H25 6IK 67 6IK H26 H26 H 0 1 N N N 43.589 -24.164 21.344 10.585 0.360 1.956 H26 6IK 68 6IK H27 H27 H 0 1 N N N 45.114 -35.963 28.687 -1.627 -0.329 2.874 H27 6IK 69 6IK H28 H28 H 0 1 N N N 44.568 -34.254 28.599 -1.425 -0.169 1.112 H28 6IK 70 6IK H29 H29 H 0 1 N N N 43.198 -35.199 25.035 -3.155 -3.471 -0.572 H29 6IK 71 6IK H30 H30 H 0 1 N N N 43.424 -36.954 24.728 -3.318 -3.610 1.194 H30 6IK 72 6IK H31 H31 H 0 1 N N N 39.851 -39.512 28.985 -7.207 -3.996 -0.517 H31 6IK 73 6IK H32 H32 H 0 1 N N N 42.153 -39.310 23.623 -6.576 1.923 -0.620 H32 6IK 74 6IK H33 H33 H 0 1 N N N 40.792 -39.497 22.465 -6.901 1.717 1.117 H33 6IK 75 6IK H34 H34 H 0 1 N N N 40.961 -41.125 20.660 -8.943 2.576 2.110 H34 6IK 76 6IK H35 H35 H 0 1 N N N 42.130 -43.212 19.596 -10.743 4.251 1.973 H35 6IK 77 6IK H36 H36 H 0 1 N N N 43.928 -44.521 20.970 -11.253 5.337 -0.178 H36 6IK 78 6IK H37 H37 H 0 1 N N N 44.555 -43.763 23.389 -9.962 4.748 -2.191 H37 6IK 79 6IK H38 H38 H 0 1 N N N 43.383 -41.686 24.447 -8.157 3.079 -2.051 H38 6IK 80 6IK H39 H39 H 0 1 N N N 42.078 -38.155 24.582 -5.277 0.363 0.349 H39 6IK 81 6IK H40 H40 H 0 1 N N N 45.960 -33.425 24.361 1.040 -2.273 0.281 H40 6IK 82 6IK H42 H42 H 0 1 N N N 40.645 -41.345 24.551 -8.839 0.259 -0.330 H42 6IK 83 6IK H43 H43 H 0 1 N N N 45.379 -37.901 25.449 0.159 -4.122 0.603 H43 6IK 84 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6IK C10 C09 SING N N 1 6IK C10 N11 SING N N 2 6IK C13 C15 SING N N 3 6IK C13 C12 SING N N 4 6IK C13 C14 SING N N 5 6IK C15 C14 SING N N 6 6IK C17 C16 SING N N 7 6IK C17 C18 SING N N 8 6IK C20 C16 SING N N 9 6IK C20 N11 SING N N 10 6IK C21 C22 DOUB Y N 11 6IK C21 C09 SING Y N 12 6IK C22 C06 SING Y N 13 6IK C24 C02 SING N N 14 6IK C24 C25 SING N N 15 6IK C26 C25 SING N N 16 6IK C26 N28 SING N N 17 6IK C02 C03 SING N N 18 6IK C02 C27 SING N N 19 6IK C02 O01 SING N N 20 6IK C03 N04 SING N N 21 6IK C05 C06 SING N N 22 6IK C05 N04 SING N N 23 6IK C05 O23 DOUB N N 24 6IK C06 C07 DOUB Y N 25 6IK C07 C08 SING Y N 26 6IK C08 C09 DOUB Y N 27 6IK C12 C16 SING N N 28 6IK C12 N11 SING N N 29 6IK C16 C19 SING N N 30 6IK C18 C19 SING N N 31 6IK C27 N28 SING N N 32 6IK C29 C42 DOUB Y N 33 6IK C29 N28 SING N N 34 6IK C29 N30 SING Y N 35 6IK C31 N30 DOUB Y N 36 6IK C31 N32 SING Y N 37 6IK C33 C42 SING Y N 38 6IK C33 N32 DOUB Y N 39 6IK C33 N34 SING N N 40 6IK C35 C36 SING N N 41 6IK C35 N34 SING N N 42 6IK C36 C37 DOUB Y N 43 6IK C36 C41 SING Y N 44 6IK C37 C38 SING Y N 45 6IK C38 C39 DOUB Y N 46 6IK C39 C40 SING Y N 47 6IK C40 C41 DOUB Y N 48 6IK C10 H1 SING N N 49 6IK C10 H2 SING N N 50 6IK C13 H3 SING N N 51 6IK C15 H4 SING N N 52 6IK C15 H5 SING N N 53 6IK C17 H6 SING N N 54 6IK C17 H7 SING N N 55 6IK C20 H8 SING N N 56 6IK C20 H9 SING N N 57 6IK C21 H10 SING N N 58 6IK C22 H11 SING N N 59 6IK C24 H12 SING N N 60 6IK C24 H13 SING N N 61 6IK C26 H14 SING N N 62 6IK C26 H15 SING N N 63 6IK C03 H16 SING N N 64 6IK C03 H17 SING N N 65 6IK C07 H18 SING N N 66 6IK C08 H19 SING N N 67 6IK C12 H20 SING N N 68 6IK C14 H21 SING N N 69 6IK C14 H22 SING N N 70 6IK C18 H23 SING N N 71 6IK C18 H24 SING N N 72 6IK C19 H25 SING N N 73 6IK C19 H26 SING N N 74 6IK C25 H27 SING N N 75 6IK C25 H28 SING N N 76 6IK C27 H29 SING N N 77 6IK C27 H30 SING N N 78 6IK C31 H31 SING N N 79 6IK C35 H32 SING N N 80 6IK C35 H33 SING N N 81 6IK C37 H34 SING N N 82 6IK C38 H35 SING N N 83 6IK C39 H36 SING N N 84 6IK C40 H37 SING N N 85 6IK C41 H38 SING N N 86 6IK C42 H39 SING N N 87 6IK N04 H40 SING N N 88 6IK N34 H42 SING N N 89 6IK O01 H43 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6IK InChI InChI 1.03 "InChI=1S/C34H42N6O2/c41-32(28-10-8-26(9-11-28)20-40-22-33(14-4-15-33)31(40)27-12-13-27)36-21-34(42)16-5-17-39(23-34)30-18-29(37-24-38-30)35-19-25-6-2-1-3-7-25/h1-3,6-11,18,24,27,31,42H,4-5,12-17,19-23H2,(H,36,41)(H,35,37,38)/t31-,34-/m0/s1" 6IK InChIKey InChI 1.03 OWDBESCKAVDZRB-VBTAUBHQSA-N 6IK SMILES_CANONICAL CACTVS 3.385 "O[C@@]1(CCCN(C1)c2cc(NCc3ccccc3)ncn2)CNC(=O)c4ccc(CN5CC6(CCC6)[C@@H]5C7CC7)cc4" 6IK SMILES CACTVS 3.385 "O[C]1(CCCN(C1)c2cc(NCc3ccccc3)ncn2)CNC(=O)c4ccc(CN5CC6(CCC6)[CH]5C7CC7)cc4" 6IK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2cc(ncn2)N3CCC[C@@](C3)(CNC(=O)c4ccc(cc4)CN5CC6([C@@H]5C7CC7)CCC6)O" 6IK SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2cc(ncn2)N3CCCC(C3)(CNC(=O)c4ccc(cc4)CN5CC6(C5C7CC7)CCC6)O" # _pdbx_chem_comp_identifier.comp_id 6IK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[(3~{S})-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-~{N}-[[(3~{S})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6IK "Create component" 2021-07-28 PDBE 6IK "Initial release" 2021-10-20 RCSB ##