data_6J2 # _chem_comp.id 6J2 _chem_comp.name "COENZYME F420-0" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H22 N3 O12 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-04-12 _chem_comp.pdbx_modified_date 2016-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 515.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6J2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JAB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6J2 C3I C11 C 0 1 N N N 37.068 209.825 8.001 8.262 -0.966 1.089 C3I 6J2 1 6J2 O3I O7 O 0 1 N N N 37.648 209.301 8.966 7.590 -1.823 1.613 O3I 6J2 2 6J2 C1I C12 C 0 1 N N S 36.047 209.069 7.162 7.606 0.276 0.542 C1I 6J2 3 6J2 C2I C13 C 0 1 N N N 34.635 209.276 7.748 8.080 1.495 1.337 C2I 6J2 4 6J2 O3P O8 O 0 1 N N N 36.514 207.698 7.104 6.187 0.155 0.656 O3P 6J2 5 6J2 P P1 P 0 1 N N N 36.466 206.884 5.690 5.199 0.201 -0.614 P 6J2 6 6J2 O1P O9 O 0 1 N N N 37.218 207.874 4.770 5.436 1.445 -1.380 O1P 6J2 7 6J2 O2P O10 O 0 1 N N N 37.088 205.653 6.140 5.479 -1.072 -1.559 O2P 6J2 8 6J2 "O5'" O11 O 0 1 N N N 34.998 206.860 5.131 3.671 0.167 -0.107 "O5'" 6J2 9 6J2 "C5'" C14 C 0 1 N N N 34.466 207.396 3.986 2.555 0.300 -0.989 "C5'" 6J2 10 6J2 "C4'" C15 C 0 1 N N R 33.155 206.736 3.623 1.256 0.224 -0.184 "C4'" 6J2 11 6J2 "O4'" O12 O 0 1 N N N 33.357 205.310 3.382 1.176 1.345 0.698 "O4'" 6J2 12 6J2 "C3'" C16 C 0 1 N N S 32.150 207.045 4.726 0.061 0.241 -1.139 "C3'" 6J2 13 6J2 "O3'" O13 O 0 1 N N N 31.567 208.308 4.413 0.141 -0.880 -2.022 "O3'" 6J2 14 6J2 "C2'" C17 C 0 1 N N S 31.022 206.007 4.752 -1.237 0.165 -0.334 "C2'" 6J2 15 6J2 "O2'" O14 O 0 1 N N N 30.060 206.323 5.746 -1.317 1.286 0.548 "O2'" 6J2 16 6J2 "C1'" C18 C 0 1 N N N 30.294 205.913 3.446 -2.432 0.182 -1.289 "C1'" 6J2 17 6J2 N10 N4 N 0 1 N N N 29.383 204.753 3.334 -3.675 0.109 -0.518 N10 6J2 18 6J2 C9A C19 C 0 1 Y N N 27.996 204.748 3.589 -4.289 1.270 -0.096 C9A 6J2 19 6J2 C9 C20 C 0 1 Y N N 27.329 205.928 3.958 -3.723 2.502 -0.406 C9 6J2 20 6J2 C8 C21 C 0 1 Y N N 25.996 205.913 4.183 -4.335 3.669 0.016 C8 6J2 21 6J2 O8M O15 O 0 1 N N N 25.391 207.088 4.529 -3.780 4.868 -0.288 O8M 6J2 22 6J2 C7 C22 C 0 1 Y N N 25.265 204.760 4.035 -5.521 3.621 0.752 C7 6J2 23 6J2 C6 C23 C 0 1 Y N N 25.832 203.556 3.638 -6.092 2.427 1.067 C6 6J2 24 6J2 C5A C24 C 0 1 Y N N 27.229 203.522 3.403 -5.487 1.227 0.648 C5A 6J2 25 6J2 C5 C25 C 0 1 N N N 27.827 202.300 3.028 -6.078 -0.014 0.974 C5 6J2 26 6J2 C10 C26 C 0 1 N N N 29.995 203.529 3.019 -4.221 -1.105 -0.227 C10 6J2 27 6J2 N1 N5 N 0 1 N N N 31.311 203.511 2.869 -3.658 -2.239 -0.623 N1 6J2 28 6J2 C4A C27 C 0 1 N N N 29.227 202.290 2.921 -5.462 -1.176 0.550 C4A 6J2 29 6J2 C4 C28 C 0 1 N N N 30.019 201.044 2.700 -6.013 -2.508 0.840 C4 6J2 30 6J2 O4 O16 O 0 1 N N N 29.381 199.985 2.698 -7.040 -2.645 1.478 O4 6J2 31 6J2 N3 N6 N 0 1 N N N 31.373 201.188 2.543 -5.330 -3.576 0.365 N3 6J2 32 6J2 C2 C29 C 0 1 N N N 31.985 202.378 2.588 -4.197 -3.419 -0.334 C2 6J2 33 6J2 O2 O17 O 0 1 N N N 33.217 202.504 2.400 -3.629 -4.421 -0.735 O2 6J2 34 6J2 H16 H16 H 0 1 N N N 36.057 209.494 6.148 7.878 0.398 -0.506 H16 6J2 35 6J2 H17 H17 H 0 1 N N N 34.389 210.348 7.742 7.808 1.373 2.385 H17 6J2 36 6J2 H18 H18 H 0 1 N N N 33.901 208.728 7.139 9.162 1.587 1.250 H18 6J2 37 6J2 H19 H19 H 0 1 N N N 34.608 208.899 8.781 7.605 2.393 0.941 H19 6J2 38 6J2 H20 H20 H 0 1 N N N 37.967 205.593 5.784 5.342 -1.924 -1.122 H20 6J2 39 6J2 H21 H21 H 0 1 N N N 35.179 207.254 3.160 2.609 1.261 -1.501 H21 6J2 40 6J2 H22 H22 H 0 1 N N N 34.294 208.471 4.141 2.574 -0.505 -1.724 H22 6J2 41 6J2 H23 H23 H 0 1 N N N 32.788 207.200 2.695 1.243 -0.698 0.398 H23 6J2 42 6J2 H24 H24 H 0 1 N N N 32.748 205.012 2.717 1.183 2.201 0.248 H24 6J2 43 6J2 H25 H25 H 0 1 N N N 32.658 207.068 5.701 0.075 1.163 -1.721 H25 6J2 44 6J2 H26 H26 H 0 1 N N N 30.931 208.538 5.080 0.134 -1.736 -1.571 H26 6J2 45 6J2 H27 H27 H 0 1 N N N 31.468 205.026 4.972 -1.250 -0.757 0.248 H27 6J2 46 6J2 H28 H28 H 0 1 N N N 30.488 206.391 6.591 -1.310 2.142 0.098 H28 6J2 47 6J2 H29 H29 H 0 1 N N N 31.040 205.843 2.641 -2.419 1.104 -1.871 H29 6J2 48 6J2 H30 H30 H 0 1 N N N 29.700 206.830 3.317 -2.371 -0.673 -1.962 H30 6J2 49 6J2 H31 H31 H 0 1 N N N 27.882 206.850 4.062 -2.806 2.548 -0.975 H31 6J2 50 6J2 H32 H32 H 0 1 N N N 24.461 206.940 4.658 -4.085 5.242 -1.126 H32 6J2 51 6J2 H33 H33 H 0 1 N N N 24.204 204.791 4.236 -5.988 4.540 1.075 H33 6J2 52 6J2 H34 H34 H 0 1 N N N 25.226 202.671 3.512 -7.009 2.399 1.636 H34 6J2 53 6J2 H35 H35 H 0 1 N N N 27.237 201.417 2.833 -6.994 -0.054 1.544 H35 6J2 54 6J2 H37 H37 H 0 1 N N N 31.927 200.370 2.388 -5.664 -4.471 0.537 H37 6J2 55 6J2 OXT OXT O 0 1 N Y N 37.331 210.984 7.485 9.592 -1.117 1.000 OXT 6J2 56 6J2 HXT HXT H 0 1 N Y N 38.048 211.387 7.960 9.967 -1.929 1.368 HXT 6J2 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6J2 O2 C2 DOUB N N 1 6J2 N3 C2 SING N N 2 6J2 N3 C4 SING N N 3 6J2 C2 N1 SING N N 4 6J2 O4 C4 DOUB N N 5 6J2 C4 C4A SING N N 6 6J2 N1 C10 DOUB N N 7 6J2 C4A C10 SING N N 8 6J2 C4A C5 DOUB N N 9 6J2 C10 N10 SING N N 10 6J2 C5 C5A SING N N 11 6J2 N10 "C1'" SING N N 12 6J2 N10 C9A SING N N 13 6J2 "O4'" "C4'" SING N N 14 6J2 C5A C9A DOUB Y N 15 6J2 C5A C6 SING Y N 16 6J2 "C1'" "C2'" SING N N 17 6J2 C9A C9 SING Y N 18 6J2 "C4'" "C5'" SING N N 19 6J2 "C4'" "C3'" SING N N 20 6J2 C6 C7 DOUB Y N 21 6J2 C9 C8 DOUB Y N 22 6J2 "C5'" "O5'" SING N N 23 6J2 C7 C8 SING Y N 24 6J2 C8 O8M SING N N 25 6J2 "O3'" "C3'" SING N N 26 6J2 "C3'" "C2'" SING N N 27 6J2 "C2'" "O2'" SING N N 28 6J2 O1P P DOUB N N 29 6J2 "O5'" P SING N N 30 6J2 P O2P SING N N 31 6J2 P O3P SING N N 32 6J2 O3P C1I SING N N 33 6J2 C1I C2I SING N N 34 6J2 C1I C3I SING N N 35 6J2 C3I O3I DOUB N N 36 6J2 C1I H16 SING N N 37 6J2 C2I H17 SING N N 38 6J2 C2I H18 SING N N 39 6J2 C2I H19 SING N N 40 6J2 O2P H20 SING N N 41 6J2 "C5'" H21 SING N N 42 6J2 "C5'" H22 SING N N 43 6J2 "C4'" H23 SING N N 44 6J2 "O4'" H24 SING N N 45 6J2 "C3'" H25 SING N N 46 6J2 "O3'" H26 SING N N 47 6J2 "C2'" H27 SING N N 48 6J2 "O2'" H28 SING N N 49 6J2 "C1'" H29 SING N N 50 6J2 "C1'" H30 SING N N 51 6J2 C9 H31 SING N N 52 6J2 O8M H32 SING N N 53 6J2 C7 H33 SING N N 54 6J2 C6 H34 SING N N 55 6J2 C5 H35 SING N N 56 6J2 N3 H37 SING N N 57 6J2 C3I OXT SING N N 58 6J2 OXT HXT SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6J2 SMILES ACDLabs 12.01 "C(=O)(O)C(C)OP(O)(=O)OCC(C(C(O)CN2c1cc(O)ccc1C=C3C2=NC(NC3=O)=O)O)O" 6J2 InChI InChI 1.03 "InChI=1S/C19H22N3O12P/c1-8(18(28)29)34-35(31,32)33-7-14(25)15(26)13(24)6-22-12-5-10(23)3-2-9(12)4-11-16(22)20-19(30)21-17(11)27/h2-5,8,13-15,23-26H,6-7H2,1H3,(H,28,29)(H,31,32)(H,21,27,30)/t8-,13-,14+,15-/m0/s1" 6J2 InChIKey InChI 1.03 QNHKLTYSDLGJSR-GQPBWUKJSA-N 6J2 SMILES_CANONICAL CACTVS 3.385 "C[C@H](O[P](O)(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13)C(O)=O" 6J2 SMILES CACTVS 3.385 "C[CH](O[P](O)(=O)OC[CH](O)[CH](O)[CH](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13)C(O)=O" 6J2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@@H](C(=O)O)OP(=O)(O)OC[C@H]([C@H]([C@H](CN1c2cc(ccc2C=C3C1=NC(=O)NC3=O)O)O)O)O" 6J2 SMILES "OpenEye OEToolkits" 2.0.4 "CC(C(=O)O)OP(=O)(O)OCC(C(C(CN1c2cc(ccc2C=C3C1=NC(=O)NC3=O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6J2 "SYSTEMATIC NAME" ACDLabs 12.01 "5-O-[(S)-[(1S)-1-carboxyethoxy](hydroxy)phosphoryl]-1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol" 6J2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-2-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[8-oxidanyl-2,4-bis(oxidanylidene)pyrimido[4,5-b]quinolin-10-yl]pentoxy]phosphoryl]oxypropanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6J2 "Create component" 2016-04-12 RCSB 6J2 "Modify name" 2016-04-13 RCSB 6J2 "Initial release" 2016-07-13 RCSB #