data_6J9 # _chem_comp.id 6J9 _chem_comp.name "4-(piperazin-1-yl)-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-04-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 203.244 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6J9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5J5X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6J9 C4 C1 C 0 1 Y N N N N N -3.538 51.292 -0.983 -0.142 0.526 -0.144 C4 6J9 1 6J9 C5 C2 C 0 1 Y N N N N N -3.607 50.093 -0.091 -1.231 -0.358 -0.148 C5 6J9 2 6J9 C6 C3 C 0 1 Y N N N N N -2.355 49.362 0.137 -2.522 0.161 0.065 C6 6J9 3 6J9 N1 N1 N 0 1 N N N Y Y Y -6.882 53.811 -1.677 3.859 -0.411 0.381 N1 6J9 4 6J9 C7 C4 C 0 1 Y N N N N N -4.599 49.400 0.651 -1.395 -1.799 -0.331 C7 6J9 5 6J9 C8 C5 C 0 1 Y N N N N N -3.984 48.327 1.271 -2.709 -2.056 -0.224 C8 6J9 6 6J9 N2 N2 N 0 1 Y N N N N N -2.320 51.605 -1.494 -0.379 1.819 0.062 N2 6J9 7 6J9 C9 C6 C 0 1 Y N N N N N -1.212 50.887 -1.238 -1.607 2.263 0.258 C9 6J9 8 6J9 N N3 N 0 1 N N N N N N -4.644 52.108 -1.301 1.147 0.064 -0.343 N 6J9 9 6J9 C1 C7 C 0 1 N N N N N N -5.912 51.561 -1.765 1.491 -0.976 0.637 C1 6J9 10 6J9 C C8 C 0 1 N N N N N N -4.519 53.556 -1.174 2.115 1.169 -0.296 C 6J9 11 6J9 C2 C9 C 0 1 N N N N N N -5.533 54.201 -2.112 3.515 0.629 -0.598 C2 6J9 12 6J9 C3 C10 C 0 1 N N N N N N -7.016 52.434 -1.169 2.891 -1.515 0.334 C3 6J9 13 6J9 N4 N4 N 0 1 Y N N N N N -1.216 49.804 -0.446 -2.657 1.471 0.262 N4 6J9 14 6J9 N3 N5 N 0 1 Y N N N N N -2.659 48.330 0.954 -3.393 -0.892 0.013 N3 6J9 15 6J9 H1 H1 H 0 1 N Y N Y Y Y -7.163 54.436 -0.949 4.799 -0.748 0.236 H1 6J9 16 6J9 H3 H3 H 0 1 N N N N N N -5.644 49.663 0.719 -0.611 -2.517 -0.517 H3 6J9 17 6J9 H4 H4 H 0 1 N N N N N N -4.475 47.603 1.904 -3.159 -3.034 -0.312 H4 6J9 18 6J9 H5 H5 H 0 1 N N N N N N -0.280 51.195 -1.689 -1.755 3.320 0.422 H5 6J9 19 6J9 H6 H6 H 0 1 N N N N N N -5.958 51.591 -2.864 1.474 -0.551 1.640 H6 6J9 20 6J9 H7 H7 H 0 1 N N N N N N -6.024 50.522 -1.421 0.766 -1.788 0.574 H7 6J9 21 6J9 H8 H8 H 0 1 N N N N N N -3.502 53.869 -1.452 1.847 1.920 -1.038 H8 6J9 22 6J9 H9 H9 H 0 1 N N N N N N -4.725 53.859 -0.137 2.106 1.619 0.697 H9 6J9 23 6J9 H10 H10 H 0 1 N N N N N N -5.360 53.854 -3.141 4.239 1.442 -0.535 H10 6J9 24 6J9 H11 H11 H 0 1 N N N N N N -5.432 55.296 -2.072 3.532 0.204 -1.602 H11 6J9 25 6J9 H12 H12 H 0 1 N N N N N N -7.998 52.031 -1.457 2.900 -1.965 -0.659 H12 6J9 26 6J9 H13 H13 H 0 1 N N N N N N -6.929 52.438 -0.072 3.159 -2.267 1.076 H13 6J9 27 6J9 H14 H14 H 0 1 N N N N N N -1.998 47.656 1.283 -4.354 -0.825 0.127 H14 6J9 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6J9 C2 N1 SING N N 1 6J9 C2 C SING N N 2 6J9 C1 N SING N N 3 6J9 C1 C3 SING N N 4 6J9 N1 C3 SING N N 5 6J9 N2 C9 DOUB Y N 6 6J9 N2 C4 SING Y N 7 6J9 N C SING N N 8 6J9 N C4 SING N N 9 6J9 C9 N4 SING Y N 10 6J9 C4 C5 DOUB Y N 11 6J9 N4 C6 DOUB Y N 12 6J9 C5 C6 SING Y N 13 6J9 C5 C7 SING Y N 14 6J9 C6 N3 SING Y N 15 6J9 C7 C8 DOUB Y N 16 6J9 N3 C8 SING Y N 17 6J9 N1 H1 SING N N 18 6J9 C7 H3 SING N N 19 6J9 C8 H4 SING N N 20 6J9 C9 H5 SING N N 21 6J9 C1 H6 SING N N 22 6J9 C1 H7 SING N N 23 6J9 C H8 SING N N 24 6J9 C H9 SING N N 25 6J9 C2 H10 SING N N 26 6J9 C2 H11 SING N N 27 6J9 C3 H12 SING N N 28 6J9 C3 H13 SING N N 29 6J9 N3 H14 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6J9 SMILES ACDLabs 12.01 "c2(c1c(ncc1)ncn2)N3CCNCC3" 6J9 InChI InChI 1.03 "InChI=1S/C10H13N5/c1-2-12-9-8(1)10(14-7-13-9)15-5-3-11-4-6-15/h1-2,7,11H,3-6H2,(H,12,13,14)" 6J9 InChIKey InChI 1.03 LZSXQBNNRGZPES-UHFFFAOYSA-N 6J9 SMILES_CANONICAL CACTVS 3.385 "C1CN(CCN1)c2ncnc3[nH]ccc23" 6J9 SMILES CACTVS 3.385 "C1CN(CCN1)c2ncnc3[nH]ccc23" 6J9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1c[nH]c2c1c(ncn2)N3CCNCC3" 6J9 SMILES "OpenEye OEToolkits" 2.0.4 "c1c[nH]c2c1c(ncn2)N3CCNCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6J9 "SYSTEMATIC NAME" ACDLabs 12.01 "4-(piperazin-1-yl)-7H-pyrrolo[2,3-d]pyrimidine" 6J9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "4-piperazin-1-yl-7~{H}-pyrrolo[2,3-d]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6J9 "Create component" 2016-04-14 EBI 6J9 "Initial release" 2016-07-20 RCSB 6J9 "Modify backbone" 2023-11-03 PDBE 6J9 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 6J9 _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #