data_6JA # _chem_comp.id 6JA _chem_comp.name "2-[5-ethyl-2,4,6-tris(oxidanylidene)-1,3-diazinan-5-yl]ethyl selenocyanate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 N3 O3 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-25 _chem_comp.pdbx_modified_date 2016-12-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.162 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6JA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5L47 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6JA C C1 C 0 1 N N N 62.723 -25.601 55.464 3.793 1.687 0.164 C 6JA 1 6JA N N1 N 0 1 N N N 60.029 -25.661 53.907 -4.227 -2.158 0.053 N 6JA 2 6JA O2 O1 O 0 1 N N N 64.054 -24.581 57.655 1.480 0.529 2.368 O2 6JA 3 6JA C8 C2 C 0 1 N N N 63.337 -25.205 58.424 1.691 0.037 1.280 C8 6JA 4 6JA N2 N2 N 0 1 N N N 63.741 -25.424 59.716 2.137 -1.231 1.160 N2 6JA 5 6JA C7 C3 C 0 1 N N N 63.114 -26.217 60.642 2.374 -1.789 -0.033 C7 6JA 6 6JA O1 O2 O 0 1 N N N 63.521 -26.317 61.796 2.774 -2.936 -0.049 O1 6JA 7 6JA N1 N3 N 0 1 N N N 62.008 -26.897 60.201 2.201 -1.176 -1.210 N1 6JA 8 6JA C6 C4 C 0 1 N N N 61.459 -26.831 58.949 1.760 0.097 -1.295 C6 6JA 9 6JA O O3 O 0 1 N N N 60.567 -27.617 58.646 1.608 0.639 -2.368 O 6JA 10 6JA C2 C5 C 0 1 N N N 62.016 -25.804 57.965 1.455 0.821 0.003 C2 6JA 11 6JA C1 C6 C 0 1 N N N 62.280 -26.509 56.609 2.320 2.082 0.053 C1 6JA 12 6JA C3 C7 C 0 1 N N N 60.998 -24.647 57.856 -0.011 1.259 -0.024 C3 6JA 13 6JA C4 C8 C 0 1 N N N 59.608 -25.085 57.508 -0.912 0.023 0.009 C4 6JA 14 6JA SE SE1 SE 0 0 N N N 59.563 -26.783 56.530 -2.790 0.584 -0.025 SE 6JA 15 6JA C5 C9 C 0 1 N N N 59.853 -26.149 54.929 -3.700 -1.152 0.025 C5 6JA 16 6JA H1 H1 H 0 1 N N N 62.880 -26.204 54.557 3.946 1.106 1.073 H1 6JA 17 6JA H2 H2 H 0 1 N N N 61.946 -24.847 55.273 4.075 1.087 -0.702 H2 6JA 18 6JA H3 H3 H 0 1 N N N 63.662 -25.098 55.737 4.409 2.586 0.199 H3 6JA 19 6JA H4 H4 H 0 1 N N N 64.576 -24.959 60.012 2.292 -1.754 1.962 H4 6JA 20 6JA H5 H5 H 0 1 N N N 61.558 -27.501 60.859 2.398 -1.661 -2.026 H5 6JA 21 6JA H6 H6 H 0 1 N N N 61.350 -27.010 56.302 2.038 2.682 0.918 H6 6JA 22 6JA H7 H7 H 0 1 N N N 63.067 -27.261 56.767 2.167 2.664 -0.857 H7 6JA 23 6JA H8 H8 H 0 1 N N N 61.346 -23.953 57.077 -0.219 1.884 0.844 H8 6JA 24 6JA H9 H9 H 0 1 N N N 60.963 -24.125 58.824 -0.204 1.826 -0.935 H9 6JA 25 6JA H10 H10 H 0 1 N N N 59.142 -24.308 56.884 -0.704 -0.602 -0.859 H10 6JA 26 6JA H11 H11 H 0 1 N N N 59.034 -25.201 58.439 -0.719 -0.544 0.920 H11 6JA 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6JA N C5 TRIP N N 1 6JA C5 SE SING N N 2 6JA C C1 SING N N 3 6JA SE C4 SING N N 4 6JA C1 C2 SING N N 5 6JA C4 C3 SING N N 6 6JA O2 C8 DOUB N N 7 6JA C3 C2 SING N N 8 6JA C2 C8 SING N N 9 6JA C2 C6 SING N N 10 6JA C8 N2 SING N N 11 6JA O C6 DOUB N N 12 6JA C6 N1 SING N N 13 6JA N2 C7 SING N N 14 6JA N1 C7 SING N N 15 6JA C7 O1 DOUB N N 16 6JA C H1 SING N N 17 6JA C H2 SING N N 18 6JA C H3 SING N N 19 6JA N2 H4 SING N N 20 6JA N1 H5 SING N N 21 6JA C1 H6 SING N N 22 6JA C1 H7 SING N N 23 6JA C3 H8 SING N N 24 6JA C3 H9 SING N N 25 6JA C4 H10 SING N N 26 6JA C4 H11 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6JA InChI InChI 1.03 "InChI=1S/C9H11N3O3Se/c1-2-9(3-4-16-5-10)6(13)11-8(15)12-7(9)14/h2-4H2,1H3,(H2,11,12,13,14,15)" 6JA InChIKey InChI 1.03 LFTCFIKEJOPJTJ-UHFFFAOYSA-N 6JA SMILES_CANONICAL CACTVS 3.385 "CCC1(CC[Se]C#N)C(=O)NC(=O)NC1=O" 6JA SMILES CACTVS 3.385 "CCC1(CC[Se]C#N)C(=O)NC(=O)NC1=O" 6JA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCC1(C(=O)NC(=O)NC1=O)CC[Se]C#N" 6JA SMILES "OpenEye OEToolkits" 2.0.5 "CCC1(C(=O)NC(=O)NC1=O)CC[Se]C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6JA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "2-[5-ethyl-2,4,6-tris(oxidanylidene)-1,3-diazinan-5-yl]ethyl selenocyanate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6JA "Create component" 2016-05-25 EBI 6JA "Other modification" 2016-06-02 RCSB 6JA "Initial release" 2016-12-21 RCSB #