data_6JR # _chem_comp.id 6JR _chem_comp.name "3-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-6-phenyl-3,4-dihydro-9H-imidazo[1,2-a]purin-9-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms PET-cGMP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-04-19 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6JR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JD7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6JR N12 N1 N 0 1 Y N N -8.169 5.708 9.708 3.260 -1.257 -0.209 N12 6JR 1 6JR C15 C1 C 0 1 N N R -3.219 9.042 10.972 -4.074 -0.164 1.082 C15 6JR 2 6JR C20 C2 C 0 1 Y N N -5.307 5.855 13.375 -1.066 -2.585 0.067 C20 6JR 3 6JR C21 C3 C 0 1 Y N N -6.898 5.559 11.912 1.065 -2.279 -0.174 C21 6JR 4 6JR C22 C4 C 0 1 N N N -8.123 5.226 11.050 2.502 -2.353 -0.419 C22 6JR 5 6JR C24 C5 C 0 1 Y N N -9.109 5.585 8.713 4.610 -1.040 -0.356 C24 6JR 6 6JR C26 C6 C 0 1 Y N N -9.314 6.417 6.244 6.157 0.932 -0.009 C26 6JR 7 6JR C28 C7 C 0 1 Y N N -8.487 6.855 5.131 6.254 2.268 0.376 C28 6JR 8 6JR P01 P1 P 0 1 N N N -1.962 9.345 8.128 -6.236 1.138 -0.457 P01 6JR 9 6JR O02 O1 O 0 1 N N N -4.132 8.695 11.781 -2.957 -0.984 1.416 O02 6JR 10 6JR O03 O2 O 0 1 N N N -1.865 7.871 8.939 -4.633 1.342 -0.682 O03 6JR 11 6JR O04 O3 O 0 1 N N N -2.182 10.540 9.307 -6.412 0.222 0.872 O04 6JR 12 6JR O05 O4 O 0 1 N N N -1.787 6.244 11.161 -2.084 1.926 -0.107 O05 6JR 13 6JR O06 O5 O 0 1 N N N -3.088 9.388 7.165 -6.880 0.390 -1.730 O06 6JR 14 6JR O07 O6 O 0 1 N N N -0.606 9.662 7.487 -6.890 2.450 -0.256 O07 6JR 15 6JR O08 O7 O 0 1 N N N -9.050 4.560 11.474 3.010 -3.389 -0.809 O08 6JR 16 6JR N09 N2 N 0 1 Y N N -4.934 6.491 12.226 -0.813 -1.289 0.415 N09 6JR 17 6JR N10 N3 N 0 1 Y N N -6.511 5.271 13.190 0.045 -3.167 -0.280 N10 6JR 18 6JR N11 N4 N 0 1 N N N -5.988 6.763 9.995 1.343 0.006 0.456 N11 6JR 19 6JR N13 N5 N 0 1 Y N N -7.399 6.823 7.889 3.656 0.808 0.342 N13 6JR 20 6JR C14 C8 C 0 1 N N S -2.983 7.711 9.877 -3.797 0.217 -0.397 C14 6JR 21 6JR C16 C9 C 0 1 N N R -3.082 6.668 10.649 -2.297 0.533 -0.341 C16 6JR 22 6JR C17 C10 C 0 1 N N R -3.904 7.116 12.003 -1.802 -0.306 0.864 C17 6JR 23 6JR C18 C11 C 0 1 N N N -3.415 10.319 10.206 -5.442 -0.809 1.179 C18 6JR 24 6JR C19 C12 C 0 1 Y N N -5.921 6.299 11.360 0.523 -1.078 0.270 C19 6JR 25 6JR C23 C13 C 0 1 Y N N -7.136 6.465 9.181 2.701 -0.089 0.221 C23 6JR 26 6JR C25 C14 C 0 1 Y N N -8.627 6.261 7.613 4.840 0.250 -0.006 C25 6JR 27 6JR C27 C15 C 0 1 Y N N -10.808 6.120 6.071 7.302 0.241 -0.401 C27 6JR 28 6JR C29 C16 C 0 1 Y N N -11.411 6.298 4.713 8.524 0.882 -0.407 C29 6JR 29 6JR C30 C17 C 0 1 Y N N -9.100 7.034 3.769 7.482 2.898 0.371 C30 6JR 30 6JR C31 C18 C 0 1 Y N N -10.582 6.750 3.577 8.614 2.208 -0.024 C31 6JR 31 6JR H151 H1 H 0 0 N N N -2.260 9.134 11.503 -4.054 0.743 1.688 H151 6JR 32 6JR H201 H3 H 0 0 N N N -4.731 5.824 14.288 -2.038 -3.054 0.078 H201 6JR 33 6JR H241 H4 H 0 0 N N N -10.049 5.058 8.780 5.346 -1.759 -0.685 H241 6JR 34 6JR H281 H5 H 0 0 N N N -7.436 7.051 5.282 5.370 2.810 0.677 H281 6JR 35 6JR H051 H6 H 0 0 N N N -1.900 5.483 11.718 -1.152 2.179 -0.062 H051 6JR 36 6JR H061 H7 H 0 0 N N N -2.759 9.610 6.302 -7.832 0.239 -1.657 H061 6JR 37 6JR H3 H9 H 0 1 N N N -5.232 7.295 9.613 0.967 0.845 0.765 H3 6JR 38 6JR H141 H10 H 0 0 N N N -3.889 7.743 9.255 -4.013 -0.614 -1.070 H141 6JR 39 6JR H161 H12 H 0 0 N N N -3.614 5.826 10.183 -1.803 0.218 -1.260 H161 6JR 40 6JR H171 H13 H 0 0 N N N -3.188 7.023 12.833 -1.360 0.347 1.617 H171 6JR 41 6JR H181 H14 H 0 0 N N N -4.320 10.245 9.585 -5.523 -1.623 0.459 H181 6JR 42 6JR H182 H15 H 0 0 N N N -3.520 11.160 10.907 -5.606 -1.185 2.189 H182 6JR 43 6JR H271 H16 H 0 0 N N N -11.409 5.791 6.906 7.233 -0.795 -0.700 H271 6JR 44 6JR H291 H17 H 0 0 N N N -12.461 6.094 4.562 9.412 0.347 -0.711 H291 6JR 45 6JR H301 H18 H 0 0 N N N -8.494 7.361 2.937 7.558 3.933 0.669 H301 6JR 46 6JR H311 H19 H 0 0 N N N -11.031 6.880 2.603 9.573 2.706 -0.030 H311 6JR 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6JR N12 C22 SING N N 1 6JR N12 C24 SING Y N 2 6JR N12 C23 SING Y N 3 6JR C15 O02 SING N N 4 6JR C15 C18 SING N N 5 6JR C20 N09 SING Y N 6 6JR C20 N10 DOUB Y N 7 6JR C21 C22 SING N N 8 6JR C21 N10 SING Y N 9 6JR C21 C19 DOUB Y N 10 6JR C22 O08 DOUB N N 11 6JR C24 C25 DOUB Y N 12 6JR C26 C28 DOUB Y N 13 6JR C26 C25 SING N N 14 6JR C26 C27 SING Y N 15 6JR C28 C30 SING Y N 16 6JR P01 O03 SING N N 17 6JR P01 O04 SING N N 18 6JR P01 O06 SING N N 19 6JR P01 O07 DOUB N N 20 6JR O02 C17 SING N N 21 6JR O03 C14 SING N N 22 6JR O04 C18 SING N N 23 6JR O05 C16 SING N N 24 6JR N09 C17 SING N N 25 6JR N09 C19 SING Y N 26 6JR N11 C19 SING N N 27 6JR N11 C23 SING N N 28 6JR N13 C23 DOUB Y N 29 6JR N13 C25 SING Y N 30 6JR C14 C16 SING N N 31 6JR C16 C17 SING N N 32 6JR C27 C29 DOUB Y N 33 6JR C29 C31 SING Y N 34 6JR C30 C31 DOUB Y N 35 6JR C15 H151 SING N N 36 6JR C20 H201 SING N N 37 6JR C24 H241 SING N N 38 6JR C28 H281 SING N N 39 6JR O05 H051 SING N N 40 6JR O06 H061 SING N N 41 6JR N11 H3 SING N N 42 6JR C14 H141 SING N N 43 6JR C16 H161 SING N N 44 6JR C17 H171 SING N N 45 6JR C18 H181 SING N N 46 6JR C18 H182 SING N N 47 6JR C27 H271 SING N N 48 6JR C29 H291 SING N N 49 6JR C30 H301 SING N N 50 6JR C31 H311 SING N N 51 6JR C15 C14 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6JR SMILES ACDLabs 12.01 "n54C(c3ncn(C2OC1COP(OC1C2O)(O)=O)c3Nc4nc(c5)c6ccccc6)=O" 6JR InChI InChI 1.03 "InChI=1S/C18H16N5O7P/c24-13-14-11(7-28-31(26,27)30-14)29-17(13)23-8-19-12-15(23)21-18-20-10(6-22(18)16(12)25)9-4-2-1-3-5-9/h1-6,8,11,13-14,17,24H,7H2,(H,20,21)(H,26,27)/t11-,13-,14-,17-/m1/s1" 6JR InChIKey InChI 1.03 TVSIKYJKUPRIDV-LSCFUAHRSA-N 6JR SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H]2O[P](O)(=O)OC[C@H]2O[C@H]1n3cnc4C(=O)n5cc(nc5Nc34)c6ccccc6" 6JR SMILES CACTVS 3.385 "O[CH]1[CH]2O[P](O)(=O)OC[CH]2O[CH]1n3cnc4C(=O)n5cc(nc5Nc34)c6ccccc6" 6JR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)c2cn3c(n2)Nc4c(ncn4[C@H]5[C@@H]([C@H]6[C@H](O5)COP(=O)(O6)O)O)C3=O" 6JR SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)c2cn3c(n2)Nc4c(ncn4C5C(C6C(O5)COP(=O)(O6)O)O)C3=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6JR "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-6-phenyl-3,4-dihydro-9H-imidazo[1,2-a]purin-9-one" 6JR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[(4~{a}~{R},6~{R},7~{R},7~{a}~{S})-2,7-bis(oxidanyl)-2-oxidanylidene-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-6-phenyl-4~{H}-imidazo[1,2-a]purin-9-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6JR "Create component" 2016-04-19 RCSB 6JR "Modify synonyms" 2016-09-26 RCSB 6JR "Initial release" 2017-08-09 RCSB 6JR "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6JR _pdbx_chem_comp_synonyms.name PET-cGMP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##