data_6JY # _chem_comp.id 6JY _chem_comp.name "N~2~-(benzenecarbonyl)-L-arginine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-04-20 _chem_comp.pdbx_modified_date 2017-05-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6JY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JGQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6JY N N1 N 0 1 N N N 52.400 -39.146 29.002 5.943 0.787 0.804 N 6JY 1 6JY C C1 C 0 1 N N N 52.283 -38.185 28.113 5.222 1.507 -0.119 C 6JY 2 6JY O O1 O 0 1 N N N 47.411 -34.237 27.530 -1.656 -3.006 0.956 O 6JY 3 6JY O2 O2 O 0 1 N N N 49.664 -33.968 24.049 -2.305 -0.949 -1.574 O2 6JY 4 6JY C6 C2 C 0 1 N N N 49.636 -32.786 24.410 -2.031 -0.304 -0.581 C6 6JY 5 6JY C7 C3 C 0 1 Y N N 49.815 -31.668 23.391 -2.892 0.825 -0.171 C7 6JY 6 6JY C12 C4 C 0 1 Y N N 50.308 -31.982 22.124 -2.577 1.571 0.965 C12 6JY 7 6JY C11 C5 C 0 1 Y N N 50.485 -30.975 21.165 -3.382 2.627 1.339 C11 6JY 8 6JY C10 C6 C 0 1 Y N N 50.191 -29.670 21.472 -4.501 2.947 0.590 C10 6JY 9 6JY C9 C7 C 0 1 Y N N 49.694 -29.353 22.719 -4.819 2.211 -0.538 C9 6JY 10 6JY C8 C8 C 0 1 Y N N 49.513 -30.340 23.682 -4.022 1.153 -0.923 C8 6JY 11 6JY N3 N2 N 0 1 N N N 49.550 -32.445 25.717 -0.941 -0.618 0.147 N3 6JY 12 6JY C4 C9 C 0 1 N N S 49.540 -33.465 26.764 -0.086 -1.737 -0.259 C4 6JY 13 6JY C5 C10 C 0 1 N N N 48.325 -33.258 27.657 -0.647 -3.023 0.292 C5 6JY 14 6JY O1 O3 O 0 1 N N N 48.248 -32.269 28.379 -0.025 -4.187 0.046 O1 6JY 15 6JY C3 C11 C 0 1 N N N 50.819 -33.450 27.601 1.328 -1.523 0.285 C3 6JY 16 6JY C2 C12 C 0 1 N N N 51.029 -34.706 28.458 1.944 -0.285 -0.371 C2 6JY 17 6JY C1 C13 C 0 1 N N N 51.430 -35.886 27.611 3.358 -0.071 0.173 C1 6JY 18 6JY N2 N3 N 0 1 N N N 51.628 -37.068 28.445 3.948 1.115 -0.454 N2 6JY 19 6JY N1 N4 N 0 1 N N N 52.802 -38.300 26.893 5.747 2.562 -0.678 N1 6JY 20 6JY H1 H1 H 0 1 N N N 52.002 -39.036 29.913 5.552 0.002 1.219 H1 6JY 21 6JY H2 H2 H 0 1 N N N 52.887 -39.987 28.768 6.844 1.062 1.037 H2 6JY 22 6JY H3 H3 H 0 1 N N N 50.554 -33.005 21.881 -1.704 1.322 1.551 H3 6JY 23 6JY H4 H4 H 0 1 N N N 50.854 -31.227 20.182 -3.139 3.206 2.218 H4 6JY 24 6JY H5 H5 H 0 1 N N N 50.348 -28.893 20.739 -5.128 3.774 0.887 H5 6JY 25 6JY H6 H6 H 0 1 N N N 49.443 -28.328 22.950 -5.694 2.466 -1.118 H6 6JY 26 6JY H7 H7 H 0 1 N N N 49.137 -30.076 24.659 -4.269 0.582 -1.806 H7 6JY 27 6JY H8 H8 H 0 1 N N N 49.492 -31.479 25.971 -0.721 -0.104 0.939 H8 6JY 28 6JY H9 H9 H 0 1 N N N 49.453 -34.456 26.294 -0.053 -1.793 -1.347 H9 6JY 29 6JY H10 H10 H 0 1 N N N 47.426 -32.287 28.855 -0.422 -4.985 0.420 H10 6JY 30 6JY H11 H11 H 0 1 N N N 51.676 -33.352 26.918 1.284 -1.379 1.364 H11 6JY 31 6JY H12 H12 H 0 1 N N N 50.782 -32.578 28.271 1.940 -2.396 0.059 H12 6JY 32 6JY H13 H13 H 0 1 N N N 51.821 -34.508 29.195 1.987 -0.429 -1.450 H13 6JY 33 6JY H14 H14 H 0 1 N N N 50.091 -34.943 28.982 1.332 0.588 -0.145 H14 6JY 34 6JY H15 H15 H 0 1 N N N 52.367 -35.653 27.085 3.314 0.073 1.253 H15 6JY 35 6JY H16 H16 H 0 1 N N N 50.638 -36.090 26.876 3.970 -0.944 -0.052 H16 6JY 36 6JY H17 H17 H 0 1 N N N 51.231 -37.039 29.362 3.439 1.622 -1.106 H17 6JY 37 6JY H18 H18 H 0 1 N N N 53.266 -39.176 26.764 6.646 2.838 -0.441 H18 6JY 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6JY C11 C10 DOUB Y N 1 6JY C11 C12 SING Y N 2 6JY C10 C9 SING Y N 3 6JY C12 C7 DOUB Y N 4 6JY C9 C8 DOUB Y N 5 6JY C7 C8 SING Y N 6 6JY C7 C6 SING N N 7 6JY O2 C6 DOUB N N 8 6JY C6 N3 SING N N 9 6JY N3 C4 SING N N 10 6JY C4 C3 SING N N 11 6JY C4 C5 SING N N 12 6JY N1 C DOUB N N 13 6JY O C5 DOUB N N 14 6JY C3 C2 SING N N 15 6JY C1 N2 SING N N 16 6JY C1 C2 SING N N 17 6JY C5 O1 SING N N 18 6JY C N2 SING N N 19 6JY C N SING N N 20 6JY N H1 SING N N 21 6JY N H2 SING N N 22 6JY C12 H3 SING N N 23 6JY C11 H4 SING N N 24 6JY C10 H5 SING N N 25 6JY C9 H6 SING N N 26 6JY C8 H7 SING N N 27 6JY N3 H8 SING N N 28 6JY C4 H9 SING N N 29 6JY O1 H10 SING N N 30 6JY C3 H11 SING N N 31 6JY C3 H12 SING N N 32 6JY C2 H13 SING N N 33 6JY C2 H14 SING N N 34 6JY C1 H15 SING N N 35 6JY C1 H16 SING N N 36 6JY N2 H17 SING N N 37 6JY N1 H18 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6JY SMILES ACDLabs 12.01 "N/C(NCCCC(NC(=O)c1ccccc1)C(=O)O)=N" 6JY InChI InChI 1.03 "InChI=1S/C13H18N4O3/c14-13(15)16-8-4-7-10(12(19)20)17-11(18)9-5-2-1-3-6-9/h1-3,5-6,10H,4,7-8H2,(H,17,18)(H,19,20)(H4,14,15,16)/t10-/m0/s1" 6JY InChIKey InChI 1.03 RSYYQCDERUOEFI-JTQLQIEISA-N 6JY SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCC[C@H](NC(=O)c1ccccc1)C(O)=O" 6JY SMILES CACTVS 3.385 "NC(=N)NCCC[CH](NC(=O)c1ccccc1)C(O)=O" 6JY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C(/N)\NCCC[C@@H](C(=O)O)NC(=O)c1ccccc1" 6JY SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)C(=O)NC(CCCNC(=N)N)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6JY "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-(benzenecarbonyl)-L-arginine" 6JY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-2-benzamido-5-carbamimidamido-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6JY "Create component" 2016-04-20 EBI 6JY "Initial release" 2017-05-10 RCSB #