data_6KG # _chem_comp.id 6KG _chem_comp.name "Nalpha-[(2S)-2-{[(2S)-2-azido-3-phenylpropanoyl]amino}-4-cyclohexylbutanoyl]-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-phenylalaninamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H54 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-04-22 _chem_comp.pdbx_modified_date 2016-07-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 662.862 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6KG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JHS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6KG C4 C1 C 0 1 Y N N 59.357 -137.629 30.131 8.586 3.014 1.627 C4 6KG 1 6KG C5 C2 C 0 1 Y N N 58.754 -136.546 29.501 8.641 2.584 0.314 C5 6KG 2 6KG C6 C3 C 0 1 Y N N 58.006 -135.640 30.245 7.492 2.144 -0.317 C6 6KG 3 6KG C7 C4 C 0 1 N N N 57.108 -134.902 32.319 5.038 1.653 -0.324 C7 6KG 4 6KG C8 C5 C 0 1 N N S 57.530 -134.898 33.796 4.882 0.147 -0.107 C8 6KG 5 6KG C15 C6 C 0 1 N N S 60.782 -134.820 35.763 1.150 -0.573 -0.567 C15 6KG 6 6KG C17 C7 C 0 1 N N N 62.919 -133.820 35.529 2.006 -2.890 -0.945 C17 6KG 7 6KG C20 C8 C 0 1 N N N 65.462 -131.261 34.578 2.569 -6.696 -1.094 C20 6KG 8 6KG C21 C9 C 0 1 N N N 65.453 -131.467 33.048 2.795 -6.926 0.402 C21 6KG 9 6KG C22 C10 C 0 1 N N N 64.073 -131.782 32.588 1.804 -6.079 1.203 C22 6KG 10 6KG C24 C11 C 0 1 N N N 60.692 -134.699 37.278 0.027 0.239 0.025 C24 6KG 11 6KG C28 C12 C 0 1 N N N 60.196 -136.834 39.972 -2.499 2.092 -0.568 C28 6KG 12 6KG C2 C13 C 0 1 Y N N 58.461 -136.894 32.250 6.234 2.569 1.675 C2 6KG 13 6KG C3 C14 C 0 1 Y N N 59.208 -137.801 31.503 7.383 3.004 2.308 C3 6KG 14 6KG C1 C15 C 0 1 Y N N 57.868 -135.803 31.621 6.290 2.133 0.364 C1 6KG 15 6KG N9 N1 N 0 1 N N N 56.993 -133.688 34.444 5.983 -0.559 -0.768 N9 6KG 16 6KG N10 N2 N 1 1 N N N 55.891 -133.453 34.270 7.038 -0.413 -0.411 N10 6KG 17 6KG N11 N3 N -1 1 N N N 54.793 -133.221 34.097 8.094 -0.268 -0.054 N11 6KG 18 6KG C12 C16 C 0 1 N N N 59.049 -134.891 33.996 3.570 -0.312 -0.689 C12 6KG 19 6KG O13 O1 O 0 1 N N N 59.839 -134.899 33.054 3.543 -0.846 -1.778 O13 6KG 20 6KG N14 N4 N 0 1 N N N 59.395 -134.855 35.289 2.426 -0.128 -0.001 N14 6KG 21 6KG C16 C17 C 0 1 N N N 61.467 -133.610 35.203 0.937 -2.053 -0.241 C16 6KG 22 6KG C18 C18 C 0 1 N N N 63.586 -132.666 34.794 1.793 -4.370 -0.619 C18 6KG 23 6KG C19 C19 C 0 1 N N N 64.961 -132.500 35.287 2.783 -5.217 -1.420 C19 6KG 24 6KG C23 C20 C 0 1 N N N 63.638 -133.005 33.326 2.018 -4.600 0.877 C23 6KG 25 6KG O25 O2 O 0 1 N N N 60.196 -133.697 37.791 0.268 1.104 0.839 O25 6KG 26 6KG N26 N5 N 0 1 N N N 61.120 -135.746 37.990 -1.245 0.003 -0.351 N26 6KG 27 6KG C27 C21 C 0 1 N N S 60.991 -135.676 39.447 -2.337 0.793 0.224 C27 6KG 28 6KG C29 C22 C 0 1 Y N N 58.905 -136.703 39.478 -1.264 2.939 -0.400 C29 6KG 29 6KG C30 C23 C 0 1 Y N N 58.607 -136.112 38.257 -1.184 3.847 0.639 C30 6KG 30 6KG C31 C24 C 0 1 Y N N 57.277 -136.027 37.846 -0.051 4.624 0.792 C31 6KG 31 6KG C32 C25 C 0 1 Y N N 56.253 -136.525 38.647 1.002 4.493 -0.094 C32 6KG 32 6KG C33 C26 C 0 1 Y N N 56.558 -137.109 39.868 0.923 3.584 -1.133 C33 6KG 33 6KG C34 C27 C 0 1 Y N N 57.881 -137.188 40.266 -0.208 2.804 -1.283 C34 6KG 34 6KG C35 C28 C 0 1 N N N 62.330 -135.700 40.174 -3.618 0.001 0.158 C35 6KG 35 6KG O36 O3 O 0 1 N N N 63.404 -135.680 39.574 -3.619 -1.112 -0.322 O36 6KG 36 6KG N37 N6 N 0 1 N N N 62.195 -135.758 41.505 -4.763 0.531 0.632 N37 6KG 37 6KG C38 C29 C 0 1 N N S 63.357 -135.787 42.386 -6.027 -0.191 0.470 C38 6KG 38 6KG C39 C30 C 0 1 N N N 63.569 -134.424 43.026 -6.230 -1.135 1.657 C39 6KG 39 6KG C40 C31 C 0 1 N N N 63.397 -133.330 41.988 -7.474 -1.993 1.419 C40 6KG 40 6KG C42 C32 C 0 1 N N N 62.687 -132.167 42.677 -7.237 -2.914 0.221 C42 6KG 41 6KG C41 C33 C 0 1 N N N 64.767 -132.863 41.510 -7.757 -2.838 2.663 C41 6KG 42 6KG C43 C34 C 0 1 N N S 63.148 -136.744 43.564 -7.183 0.810 0.411 C43 6KG 43 6KG O44 O4 O 0 1 N N N 61.789 -136.685 43.985 -7.284 1.495 1.661 O44 6KG 44 6KG C45 C35 C 0 1 N N R 63.553 -138.248 43.294 -6.924 1.822 -0.706 C45 6KG 45 6KG C48 C36 C 0 1 N N N 64.321 -138.310 41.947 -8.004 2.905 -0.673 C48 6KG 46 6KG C46 C37 C 0 1 N N N 62.285 -139.069 43.093 -6.959 1.108 -2.059 C46 6KG 47 6KG O47 O5 O 0 1 N N N 62.210 -139.242 41.674 -6.603 2.029 -3.092 O47 6KG 48 6KG H1 H1 H 0 1 N N N 59.939 -138.334 29.557 9.484 3.355 2.122 H1 6KG 49 6KG H2 H2 H 0 1 N N N 58.866 -136.409 28.436 9.580 2.593 -0.218 H2 6KG 50 6KG H3 H3 H 0 1 N N N 57.529 -134.805 29.753 7.535 1.808 -1.343 H3 6KG 51 6KG H4 H4 H 0 1 N N N 57.252 -133.897 31.895 5.108 1.860 -1.392 H4 6KG 52 6KG H5 H5 H 0 1 N N N 56.047 -135.183 32.243 4.174 2.171 0.091 H5 6KG 53 6KG H6 H6 H 0 1 N N N 57.113 -135.792 34.284 4.901 -0.070 0.961 H6 6KG 54 6KG H7 H7 H 0 1 N N N 61.321 -135.737 35.483 1.166 -0.438 -1.648 H7 6KG 55 6KG H8 H8 H 0 1 N N N 63.275 -134.791 35.154 1.933 -2.741 -2.022 H8 6KG 56 6KG H9 H9 H 0 1 N N N 63.097 -133.758 36.613 2.994 -2.581 -0.601 H9 6KG 57 6KG H10 H10 H 0 1 N N N 66.489 -131.047 34.908 3.275 -7.300 -1.665 H10 6KG 58 6KG H11 H11 H 0 1 N N N 64.811 -130.411 34.832 1.551 -6.983 -1.356 H11 6KG 59 6KG H12 H12 H 0 1 N N N 66.123 -132.300 32.788 2.642 -7.981 0.634 H12 6KG 60 6KG H13 H13 H 0 1 N N N 65.801 -130.548 32.554 3.813 -6.640 0.664 H13 6KG 61 6KG H14 H14 H 0 1 N N N 63.398 -130.943 32.815 0.786 -6.366 0.941 H14 6KG 62 6KG H15 H15 H 0 1 N N N 64.070 -131.973 31.505 1.965 -6.243 2.269 H15 6KG 63 6KG H16 H16 H 0 1 N N N 60.637 -137.781 39.628 -2.640 1.859 -1.623 H16 6KG 64 6KG H17 H17 H 0 1 N N N 60.183 -136.814 41.072 -3.367 2.638 -0.197 H17 6KG 65 6KG H18 H18 H 0 1 N N N 58.342 -137.036 33.314 5.294 2.560 2.207 H18 6KG 66 6KG H19 H19 H 0 1 N N N 59.675 -138.643 31.992 7.341 3.335 3.335 H19 6KG 67 6KG H21 H21 H 0 1 N N N 58.664 -134.852 35.972 2.447 0.299 0.870 H21 6KG 68 6KG H22 H22 H 0 1 N N N 61.089 -132.693 35.679 1.010 -2.202 0.837 H22 6KG 69 6KG H23 H23 H 0 1 N N N 61.317 -133.546 34.115 -0.051 -2.362 -0.584 H23 6KG 70 6KG H24 H24 H 0 1 N N N 63.007 -131.743 34.947 0.774 -4.656 -0.881 H24 6KG 71 6KG H25 H25 H 0 1 N N N 65.577 -133.374 35.028 3.802 -4.930 -1.158 H25 6KG 72 6KG H26 H26 H 0 1 N N N 64.970 -132.356 36.377 2.623 -5.053 -2.485 H26 6KG 73 6KG H27 H27 H 0 1 N N N 62.642 -133.317 32.979 1.312 -3.996 1.448 H27 6KG 74 6KG H28 H28 H 0 1 N N N 64.357 -133.820 33.156 3.036 -4.313 1.140 H28 6KG 75 6KG H29 H29 H 0 1 N N N 61.515 -136.549 37.543 -1.439 -0.689 -1.003 H29 6KG 76 6KG H30 H30 H 0 1 N N N 60.471 -134.745 39.716 -2.108 1.026 1.264 H30 6KG 77 6KG H31 H31 H 0 1 N N N 59.397 -135.722 37.632 -2.006 3.949 1.331 H31 6KG 78 6KG H32 H32 H 0 1 N N N 57.039 -135.570 36.897 0.012 5.334 1.603 H32 6KG 79 6KG H33 H33 H 0 1 N N N 55.226 -136.457 38.319 1.887 5.101 0.025 H33 6KG 80 6KG H34 H34 H 0 1 N N N 55.773 -137.497 40.500 1.745 3.482 -1.825 H34 6KG 81 6KG H35 H35 H 0 1 N N N 58.118 -137.641 41.217 -0.269 2.091 -2.092 H35 6KG 82 6KG H36 H36 H 0 1 N N N 61.278 -135.782 41.903 -4.750 1.391 1.081 H36 6KG 83 6KG H37 H37 H 0 1 N N N 64.259 -136.080 41.828 -5.999 -0.769 -0.453 H37 6KG 84 6KG H38 H38 H 0 1 N N N 64.585 -134.372 43.445 -5.358 -1.781 1.761 H38 6KG 85 6KG H39 H39 H 0 1 N N N 62.833 -134.281 43.831 -6.361 -0.551 2.568 H39 6KG 86 6KG H40 H40 H 0 1 N N N 62.799 -133.695 41.140 -8.328 -1.347 1.217 H40 6KG 87 6KG H41 H41 H 0 1 N N N 61.697 -132.496 43.025 -8.149 -3.471 0.004 H41 6KG 88 6KG H42 H42 H 0 1 N N N 63.285 -131.830 43.537 -6.962 -2.316 -0.648 H42 6KG 89 6KG H43 H43 H 0 1 N N N 62.568 -131.337 41.965 -6.432 -3.611 0.452 H43 6KG 90 6KG H44 H44 H 0 1 N N N 65.286 -133.696 41.012 -6.903 -3.485 2.865 H44 6KG 91 6KG H45 H45 H 0 1 N N N 64.644 -132.031 40.801 -7.926 -2.182 3.517 H45 6KG 92 6KG H46 H46 H 0 1 N N N 65.360 -132.525 42.372 -8.644 -3.449 2.493 H46 6KG 93 6KG H47 H47 H 0 1 N N N 63.785 -136.389 44.388 -8.113 0.278 0.212 H47 6KG 94 6KG H48 H48 H 0 1 N N N 61.657 -137.278 44.716 -6.489 1.990 1.903 H48 6KG 95 6KG H49 H49 H 0 1 N N N 64.164 -138.642 44.119 -5.945 2.280 -0.562 H49 6KG 96 6KG H50 H50 H 0 1 N N N 65.253 -137.732 42.029 -8.988 2.440 -0.728 H50 6KG 97 6KG H51 H51 H 0 1 N N N 64.559 -139.357 41.709 -7.922 3.472 0.254 H51 6KG 98 6KG H52 H52 H 0 1 N N N 63.695 -137.885 41.148 -7.872 3.576 -1.522 H52 6KG 99 6KG H53 H53 H 0 1 N N N 61.404 -138.528 43.469 -6.251 0.280 -2.051 H53 6KG 100 6KG H54 H54 H 0 1 N N N 62.363 -140.041 43.602 -7.963 0.727 -2.243 H54 6KG 101 6KG H55 H55 H 0 1 N N N 61.437 -139.751 41.457 -6.604 1.644 -3.980 H55 6KG 102 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6KG C5 C4 DOUB Y N 1 6KG C5 C6 SING Y N 2 6KG C4 C3 SING Y N 3 6KG C6 C1 DOUB Y N 4 6KG C3 C2 DOUB Y N 5 6KG C1 C2 SING Y N 6 6KG C1 C7 SING N N 7 6KG C7 C8 SING N N 8 6KG C22 C21 SING N N 9 6KG C22 C23 SING N N 10 6KG C21 C20 SING N N 11 6KG O13 C12 DOUB N N 12 6KG C23 C18 SING N N 13 6KG C8 C12 SING N N 14 6KG C8 N9 SING N N 15 6KG C12 N14 SING N N 16 6KG N11 N10 DOUB N N 17 6KG N10 N9 DOUB N N 18 6KG C20 C19 SING N N 19 6KG C18 C19 SING N N 20 6KG C18 C17 SING N N 21 6KG C16 C17 SING N N 22 6KG C16 C15 SING N N 23 6KG N14 C15 SING N N 24 6KG C15 C24 SING N N 25 6KG C24 O25 DOUB N N 26 6KG C24 N26 SING N N 27 6KG C31 C30 DOUB Y N 28 6KG C31 C32 SING Y N 29 6KG N26 C27 SING N N 30 6KG C30 C29 SING Y N 31 6KG C32 C33 DOUB Y N 32 6KG C27 C28 SING N N 33 6KG C27 C35 SING N N 34 6KG C29 C28 SING N N 35 6KG C29 C34 DOUB Y N 36 6KG O36 C35 DOUB N N 37 6KG C33 C34 SING Y N 38 6KG C35 N37 SING N N 39 6KG N37 C38 SING N N 40 6KG C41 C40 SING N N 41 6KG O47 C46 SING N N 42 6KG C48 C45 SING N N 43 6KG C40 C42 SING N N 44 6KG C40 C39 SING N N 45 6KG C38 C39 SING N N 46 6KG C38 C43 SING N N 47 6KG C46 C45 SING N N 48 6KG C45 C43 SING N N 49 6KG C43 O44 SING N N 50 6KG C4 H1 SING N N 51 6KG C5 H2 SING N N 52 6KG C6 H3 SING N N 53 6KG C7 H4 SING N N 54 6KG C7 H5 SING N N 55 6KG C8 H6 SING N N 56 6KG C15 H7 SING N N 57 6KG C17 H8 SING N N 58 6KG C17 H9 SING N N 59 6KG C20 H10 SING N N 60 6KG C20 H11 SING N N 61 6KG C21 H12 SING N N 62 6KG C21 H13 SING N N 63 6KG C22 H14 SING N N 64 6KG C22 H15 SING N N 65 6KG C28 H16 SING N N 66 6KG C28 H17 SING N N 67 6KG C2 H18 SING N N 68 6KG C3 H19 SING N N 69 6KG N14 H21 SING N N 70 6KG C16 H22 SING N N 71 6KG C16 H23 SING N N 72 6KG C18 H24 SING N N 73 6KG C19 H25 SING N N 74 6KG C19 H26 SING N N 75 6KG C23 H27 SING N N 76 6KG C23 H28 SING N N 77 6KG N26 H29 SING N N 78 6KG C27 H30 SING N N 79 6KG C30 H31 SING N N 80 6KG C31 H32 SING N N 81 6KG C32 H33 SING N N 82 6KG C33 H34 SING N N 83 6KG C34 H35 SING N N 84 6KG N37 H36 SING N N 85 6KG C38 H37 SING N N 86 6KG C39 H38 SING N N 87 6KG C39 H39 SING N N 88 6KG C40 H40 SING N N 89 6KG C42 H41 SING N N 90 6KG C42 H42 SING N N 91 6KG C42 H43 SING N N 92 6KG C41 H44 SING N N 93 6KG C41 H45 SING N N 94 6KG C41 H46 SING N N 95 6KG C43 H47 SING N N 96 6KG O44 H48 SING N N 97 6KG C45 H49 SING N N 98 6KG C48 H50 SING N N 99 6KG C48 H51 SING N N 100 6KG C48 H52 SING N N 101 6KG C46 H53 SING N N 102 6KG C46 H54 SING N N 103 6KG O47 H55 SING N N 104 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6KG SMILES ACDLabs 12.01 "c1ccc(cc1)CC(C(NC(C(=O)NC(Cc2ccccc2)C(NC(CC(C)C)C(O)C(C)CO)=O)CCC3CCCCC3)=O)N=[N+]=[N-]" 6KG InChI InChI 1.03 ;InChI=1S/C37H54N6O5/c1-25(2)21-31(34(45)26(3)24-44)40-36(47)32(22-28-15-9-5-10-16-28)41-35(46)30(20-19-27-13-7-4-8-14-27)39-37(48)33(42-43-38)23-29-17-11-6-12-18-29/h5-6,9-12,15-18,25-27,30-34,44-45H,4,7-8,13-14,19-24H2,1-3H3,(H,39,48)(H,40,47)(H,41,46)/t26-,30+,31+,32+,33+,34+/m1/s1 ; 6KG InChIKey InChI 1.03 OENPGYKZUFVMPA-DZPCQTFRSA-N 6KG SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCC2CCCCC2)NC(=O)[C@H](Cc3ccccc3)N=[N+]=[N-])[C@@H](O)[C@H](C)CO" 6KG SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](Cc1ccccc1)NC(=O)[CH](CCC2CCCCC2)NC(=O)[CH](Cc3ccccc3)N=[N+]=[N-])[CH](O)[CH](C)CO" 6KG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@H](CO)[C@@H]([C@H](CC(C)C)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCC2CCCCC2)NC(=O)[C@H](Cc3ccccc3)N=[N+]=[N-])O" 6KG SMILES "OpenEye OEToolkits" 2.0.4 "CC(C)CC(C(C(C)CO)O)NC(=O)C(Cc1ccccc1)NC(=O)C(CCC2CCCCC2)NC(=O)C(Cc3ccccc3)N=[N+]=[N-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6KG "SYSTEMATIC NAME" ACDLabs 12.01 "Nalpha-[(2S)-2-{[(2S)-2-azido-3-phenylpropanoyl]amino}-4-cyclohexylbutanoyl]-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-phenylalaninamide" 6KG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-cyclohexyl-~{N}-[(2~{S})-1-[[(2~{R},3~{S},4~{S})-2,6-dimethyl-1,3-bis(oxidanyl)heptan-4-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6KG "Create component" 2016-04-22 EBI 6KG "Initial release" 2016-08-03 RCSB #