data_6LW # _chem_comp.id 6LW _chem_comp.name "(Z)-L-Arabinonhydroximo-1,4-lactone" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H9 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{Z},3~{R},4~{R},5~{S})-2-hydroxyimino-5-(hydroxymethyl)oxolane-3,4-diol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 163.129 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6LW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JOY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6LW _pdbx_chem_comp_synonyms.name "(2~{Z},3~{R},4~{R},5~{S})-2-hydroxyimino-5-(hydroxymethyl)oxolane-3,4-diol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6LW C3 C3 C 0 1 N N R 300.146 218.016 329.944 0.767 1.291 0.115 C3 6LW 1 6LW C2 C2 C 0 1 N N R 300.711 216.621 329.663 -0.768 1.334 -0.070 C2 6LW 2 6LW C1 C1 C 0 1 N N N 299.655 215.795 330.325 -1.185 -0.126 0.018 C1 6LW 3 6LW O3 O3 O 0 1 N N N 300.479 218.970 328.932 1.161 2.005 1.288 O3 6LW 4 6LW O4 O4 O 0 1 N N N 298.409 216.502 330.577 -0.091 -0.854 -0.355 O4 6LW 5 6LW O1 O1 O 0 1 N N N 298.842 213.866 331.219 -2.557 -1.977 0.400 O1 6LW 6 6LW C4 C4 C 0 1 N N S 298.619 217.814 330.015 1.046 -0.223 0.273 C4 6LW 7 6LW N1 N1 N 0 1 N N N 299.858 214.589 330.627 -2.329 -0.580 0.370 N1 6LW 8 6LW O2 O2 O 0 1 N N N 302.024 216.348 330.179 -1.105 1.876 -1.349 O2 6LW 9 6LW C5 C5 C 0 1 N N N 297.861 218.863 330.809 2.339 -0.609 -0.447 C5 6LW 10 6LW O5 O5 O 0 1 N N N 298.292 218.813 332.166 2.636 -1.983 -0.190 O5 6LW 11 6LW H3 H1 H 0 1 N N N 300.506 218.357 330.926 1.274 1.687 -0.765 H3 6LW 12 6LW H2 H2 H 0 1 N N N 300.686 216.440 328.578 -1.233 1.916 0.725 H2 6LW 13 6LW HO3 H3 H 0 1 N Y N 300.105 219.814 329.156 1.007 2.958 1.239 HO3 6LW 14 6LW H4A H4 H 0 1 N N N 299.140 212.980 331.387 -3.450 -2.224 0.678 H4A 6LW 15 6LW H4 H5 H 0 1 N N N 298.233 217.826 328.985 1.099 -0.494 1.328 H4 6LW 16 6LW HO2 H6 H 0 1 N Y N 302.277 215.461 329.950 -2.055 1.926 -1.517 HO2 6LW 17 6LW H51 H7 H 0 1 N N N 298.065 219.861 330.393 2.217 -0.459 -1.520 H51 6LW 18 6LW H52 H8 H 0 1 N N N 296.782 218.658 330.756 3.157 0.013 -0.085 H52 6LW 19 6LW HO5 H9 H 0 1 N Y N 297.823 219.466 332.672 3.445 -2.298 -0.617 HO5 6LW 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6LW O3 C3 SING N N 1 6LW C2 C3 SING N N 2 6LW C2 O2 SING N N 3 6LW C2 C1 SING N N 4 6LW C3 C4 SING N N 5 6LW C4 O4 SING N N 6 6LW C4 C5 SING N N 7 6LW C1 O4 SING N N 8 6LW C1 N1 DOUB N Z 9 6LW N1 O1 SING N N 10 6LW C5 O5 SING N N 11 6LW C3 H3 SING N N 12 6LW C2 H2 SING N N 13 6LW O3 HO3 SING N N 14 6LW O1 H4A SING N N 15 6LW C4 H4 SING N N 16 6LW O2 HO2 SING N N 17 6LW C5 H51 SING N N 18 6LW C5 H52 SING N N 19 6LW O5 HO5 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6LW InChI InChI 1.03 "InChI=1S/C5H9NO5/c7-1-2-3(8)4(9)5(6-10)11-2/h2-4,7-10H,1H2/b6-5-/t2-,3-,4+/m0/s1" 6LW InChIKey InChI 1.03 AVHYWFZJLLOYOD-XXXIWBGBSA-N 6LW SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1OC(=N\O)/[C@H](O)[C@H]1O" 6LW SMILES CACTVS 3.385 "OC[CH]1OC(=NO)[CH](O)[CH]1O" 6LW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]1[C@@H]([C@H](/C(=N/O)/O1)O)O)O" 6LW SMILES "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(=NO)O1)O)O)O" # _pdbx_chem_comp_identifier.comp_id 6LW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{Z},3~{R},4~{R},5~{S})-2-hydroxyimino-5-(hydroxymethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 6LW "CARBOHYDRATE ISOMER" L PDB ? 6LW "CARBOHYDRATE RING" furanose PDB ? 6LW "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6LW "Create component" 2016-05-03 EBI 6LW "Initial release" 2016-08-10 RCSB 6LW "Modify atom id" 2016-11-24 EBI 6LW "Other modification" 2020-07-03 RCSB 6LW "Modify name" 2020-07-17 RCSB 6LW "Modify synonyms" 2020-07-17 RCSB 6LW "Modify internal type" 2020-07-17 RCSB 6LW "Modify linking type" 2020-07-17 RCSB 6LW "Modify atom id" 2020-07-17 RCSB 6LW "Modify component atom id" 2020-07-17 RCSB 6LW "Modify leaving atom flag" 2020-07-17 RCSB ##