data_6MJ # _chem_comp.id 6MJ _chem_comp.name "methyl beta-D-xylopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id XYP _chem_comp.pdbx_synonyms "methyl beta-D-xyloside; methyl D-xyloside; methyl xyloside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-09 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6MJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JRN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 6MJ "methyl beta-D-xyloside" PDB ? 2 6MJ "methyl D-xyloside" PDB ? 3 6MJ "methyl xyloside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6MJ C01 C01 C 0 1 N N N 16.614 32.450 22.554 -3.484 0.669 0.168 C01 6MJ 1 6MJ O1 O02 O 0 1 N N N 15.645 31.439 22.420 -2.461 -0.215 -0.296 O1 6MJ 2 6MJ C1 C03 C 0 1 N N R 14.506 31.634 23.210 -1.159 0.088 0.208 C1 6MJ 3 6MJ C2 C04 C 0 1 N N R 13.319 31.931 22.250 -0.171 -0.988 -0.251 C2 6MJ 4 6MJ C3 C05 C 0 1 N N S 11.973 31.823 22.984 1.233 -0.625 0.242 C3 6MJ 5 6MJ C4 C06 C 0 1 N N R 11.871 30.441 23.657 1.603 0.765 -0.284 C4 6MJ 6 6MJ C5 C07 C 0 1 N N N 13.090 30.234 24.586 0.547 1.774 0.176 C5 6MJ 7 6MJ O5 O08 O 0 1 N N N 14.339 30.483 23.986 -0.739 1.360 -0.290 O5 6MJ 8 6MJ O4 O09 O 0 1 N N N 10.702 30.437 24.419 2.881 1.145 0.229 O4 6MJ 9 6MJ O3 O10 O 0 1 N N N 10.953 31.888 22.033 2.173 -1.586 -0.243 O3 6MJ 10 6MJ O2 O11 O 0 1 N N N 13.462 33.269 21.876 -0.556 -2.253 0.293 O2 6MJ 11 6MJ H1A H1 H 0 1 N N N 17.473 32.224 21.904 -4.442 0.373 -0.259 H1A 6MJ 12 6MJ H2A H2 H 0 1 N N N 16.178 33.417 22.262 -3.540 0.622 1.255 H2A 6MJ 13 6MJ H3A H3 H 0 1 N N N 16.949 32.500 23.600 -3.249 1.689 -0.140 H3A 6MJ 14 6MJ H1 H4 H 0 1 N N N 14.644 32.511 23.860 -1.187 0.115 1.297 H1 6MJ 15 6MJ H2 H5 H 0 1 N N N 13.345 31.246 21.390 -0.172 -1.044 -1.339 H2 6MJ 16 6MJ H3 H6 H 0 1 N N N 11.889 32.618 23.740 1.247 -0.618 1.332 H3 6MJ 17 6MJ H4 H7 H 0 1 N N N 11.858 29.656 22.887 1.639 0.745 -1.373 H4 6MJ 18 6MJ H51 H8 H 0 1 N N N 12.983 30.911 25.447 0.541 1.823 1.265 H51 6MJ 19 6MJ H52 H9 H 0 1 N N N 13.080 29.191 24.936 0.782 2.757 -0.231 H52 6MJ 20 6MJ HO4 H10 H 0 1 N Y N 10.607 29.596 24.850 3.179 2.017 -0.064 HO4 6MJ 21 6MJ HO3 H11 H 0 1 N Y N 10.110 31.823 22.467 3.085 -1.417 0.031 HO3 6MJ 22 6MJ HO2 H12 H 0 1 N Y N 14.285 33.383 21.416 -1.437 -2.546 0.023 HO2 6MJ 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6MJ O2 C2 SING N N 1 6MJ O3 C3 SING N N 2 6MJ C2 C3 SING N N 3 6MJ C2 C1 SING N N 4 6MJ O1 C01 SING N N 5 6MJ O1 C1 SING N N 6 6MJ C3 C4 SING N N 7 6MJ C1 O5 SING N N 8 6MJ C4 O4 SING N N 9 6MJ C4 C5 SING N N 10 6MJ O5 C5 SING N N 11 6MJ C01 H1A SING N N 12 6MJ C01 H2A SING N N 13 6MJ C01 H3A SING N N 14 6MJ C1 H1 SING N N 15 6MJ C2 H2 SING N N 16 6MJ C3 H3 SING N N 17 6MJ C4 H4 SING N N 18 6MJ C5 H51 SING N N 19 6MJ C5 H52 SING N N 20 6MJ O4 HO4 SING N N 21 6MJ O3 HO3 SING N N 22 6MJ O2 HO2 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6MJ SMILES ACDLabs 12.01 "COC1OCC(C(C1O)O)O" 6MJ InChI InChI 1.03 "InChI=1S/C6H12O5/c1-10-6-5(9)4(8)3(7)2-11-6/h3-9H,2H2,1H3/t3-,4+,5-,6-/m1/s1" 6MJ InChIKey InChI 1.03 ZBDGHWFPLXXWRD-JGWLITMVSA-N 6MJ SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1OC[C@@H](O)[C@H](O)[C@H]1O" 6MJ SMILES CACTVS 3.385 "CO[CH]1OC[CH](O)[CH](O)[CH]1O" 6MJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CO[C@H]1[C@@H]([C@H]([C@@H](CO1)O)O)O" 6MJ SMILES "OpenEye OEToolkits" 2.0.4 "COC1C(C(C(CO1)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6MJ "SYSTEMATIC NAME" ACDLabs 12.01 "methyl beta-D-xylopyranoside" 6MJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},3~{R},4~{S},5~{R})-2-methoxyoxane-3,4,5-triol" 6MJ "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DXylp[1Me]b 6MJ "COMMON NAME" GMML 1.0 1-methyl-b-D-xylopyranose # _pdbx_chem_comp_related.comp_id 6MJ _pdbx_chem_comp_related.related_comp_id XYP _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 6MJ C1 XYP C1 "Carbohydrate core" 2 6MJ C2 XYP C2 "Carbohydrate core" 3 6MJ C3 XYP C3 "Carbohydrate core" 4 6MJ C4 XYP C4 "Carbohydrate core" 5 6MJ C5 XYP C5 "Carbohydrate core" 6 6MJ O1 XYP O1 "Carbohydrate core" 7 6MJ O5 XYP O5 "Carbohydrate core" 8 6MJ O4 XYP O4 "Carbohydrate core" 9 6MJ O3 XYP O3 "Carbohydrate core" 10 6MJ O2 XYP O2 "Carbohydrate core" 11 6MJ HO4 XYP HO4 "Carbohydrate core" 12 6MJ HO3 XYP HO3 "Carbohydrate core" 13 6MJ HO2 XYP HO2 "Carbohydrate core" 14 6MJ H1 XYP H1 "Carbohydrate core" 15 6MJ H2 XYP H2 "Carbohydrate core" 16 6MJ H3 XYP H3 "Carbohydrate core" 17 6MJ H4 XYP H4 "Carbohydrate core" 18 6MJ H51 XYP H51 "Carbohydrate core" 19 6MJ H52 XYP H52 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 6MJ "CARBOHYDRATE ISOMER" D PDB ? 6MJ "CARBOHYDRATE RING" pyranose PDB ? 6MJ "CARBOHYDRATE ANOMER" beta PDB ? 6MJ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6MJ "Create component" 2016-05-09 EBI 6MJ "Initial release" 2017-05-24 RCSB 6MJ "Other modification" 2020-07-03 RCSB 6MJ "Modify parent residue" 2020-07-17 RCSB 6MJ "Modify synonyms" 2020-07-17 RCSB 6MJ "Modify internal type" 2020-07-17 RCSB 6MJ "Modify linking type" 2020-07-17 RCSB 6MJ "Modify atom id" 2020-07-17 RCSB 6MJ "Modify component atom id" 2020-07-17 RCSB 6MJ "Modify leaving atom flag" 2020-07-17 RCSB ##