data_6MZ # _chem_comp.id 6MZ _chem_comp.name "N6-METHYLADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-03-21 _chem_comp.pdbx_modified_date 2018-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code A _chem_comp.three_letter_code 6MZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6MZ C2 C2 C 0 1 Y N N 202.191 94.809 -2.784 4.850 -1.059 -0.961 C2 6MZ 1 6MZ C4 C4 C 0 1 Y N N 200.999 93.902 -1.149 2.811 -0.211 -0.324 C4 6MZ 2 6MZ C5 C5 C 0 1 Y N N 201.650 94.643 -0.171 3.452 0.951 0.140 C5 6MZ 3 6MZ O1P O1P O 0 1 N N N 199.114 89.190 4.356 -6.250 0.244 0.138 O1P 6MZ 4 6MZ O2P O2P O 0 1 N N N 200.745 91.209 4.442 -4.706 1.944 1.186 O2P 6MZ 5 6MZ N9 N9 N 0 1 Y N N 200.080 93.130 -0.485 1.473 -0.028 -0.080 N9 6MZ 6 6MZ N3 N3 N 0 1 Y N N 201.219 93.937 -2.480 3.543 -1.181 -0.862 N3 6MZ 7 6MZ N1 N1 N 0 1 Y N N 202.913 95.597 -1.965 5.496 0.013 -0.540 N1 6MZ 8 6MZ C6 C6 C 0 1 Y N N 202.675 95.549 -0.627 4.848 1.034 0.012 C6 6MZ 9 6MZ N6 N6 N 0 1 N N N 203.426 96.361 0.159 5.534 2.154 0.449 N6 6MZ 10 6MZ C9 C9 C 0 1 N N N 203.322 96.445 1.513 6.990 2.223 0.308 C9 6MZ 11 6MZ N7 N7 N 0 1 Y N N 201.147 94.331 1.087 2.490 1.767 0.633 N7 6MZ 12 6MZ C8 C8 C 0 1 Y N N 200.223 93.433 0.845 1.328 1.195 0.505 C8 6MZ 13 6MZ "O5'" "O5'" O 0 1 N N N 199.377 90.741 2.391 -3.698 0.344 -0.486 "O5'" 6MZ 14 6MZ "C5'" "C5'" C 0 1 N N N 198.283 90.142 1.666 -3.093 -0.612 0.388 "C5'" 6MZ 15 6MZ "C4'" "C4'" C 0 1 N N R 198.433 90.365 0.182 -1.898 -1.260 -0.313 "C4'" 6MZ 16 6MZ "O4'" "O4'" O 0 1 N N N 198.234 91.770 -0.112 -0.864 -0.284 -0.519 "O4'" 6MZ 17 6MZ "C1'" "C1'" C 0 1 N N R 199.152 92.188 -1.101 0.398 -0.973 -0.391 "C1'" 6MZ 18 6MZ "C2'" "C2'" C 0 1 N N R 199.837 90.933 -1.635 0.162 -1.942 0.796 "C2'" 6MZ 19 6MZ "O2'" "O2'" O 0 1 N N N 199.113 90.419 -2.736 1.040 -3.066 0.719 "O2'" 6MZ 20 6MZ "C3'" "C3'" C 0 1 N N S 199.796 90.041 -0.405 -1.311 -2.375 0.574 "C3'" 6MZ 21 6MZ "O3'" "O3'" O 0 1 N N N 199.941 88.649 -0.671 -1.369 -3.633 -0.100 "O3'" 6MZ 22 6MZ P P P 0 1 N N N 199.470 90.599 3.984 -4.985 1.218 -0.073 P 6MZ 23 6MZ O3P O3P O 0 1 N Y N 198.265 91.505 4.523 -5.313 2.276 -1.242 O3P 6MZ 24 6MZ H2 H2 H 0 1 N N N 202.428 94.891 -3.834 5.416 -1.868 -1.399 H2 6MZ 25 6MZ H1P H1P H 0 1 N N N 199.807 88.818 4.889 -6.490 -0.265 -0.648 H1P 6MZ 26 6MZ H8 H8 H 0 1 N N N 199.629 92.974 1.622 0.388 1.625 0.817 H8 6MZ 27 6MZ "H1'" "H1'" H 0 1 N N N 198.622 92.680 -1.930 0.627 -1.527 -1.302 "H1'" 6MZ 28 6MZ H9C1 H9C1 H 0 0 N N N 204.048 97.179 1.892 7.449 1.401 0.859 H9C1 6MZ 29 6MZ H9C2 H9C2 H 0 0 N N N 202.304 96.763 1.783 7.257 2.146 -0.747 H9C2 6MZ 30 6MZ "H5'1" "H5'1" H 0 0 N N N 198.267 89.061 1.868 -2.754 -0.111 1.295 "H5'1" 6MZ 31 6MZ "H5'2" "H5'2" H 0 0 N N N 197.338 90.592 2.004 -3.822 -1.379 0.648 "H5'2" 6MZ 32 6MZ "H4'" "H4'" H 0 1 N N N 197.673 89.768 -0.344 -2.212 -1.675 -1.271 "H4'" 6MZ 33 6MZ "H3'" "H3'" H 0 1 N N N 200.573 90.374 0.299 -1.842 -2.425 1.525 "H3'" 6MZ 34 6MZ "H2'" "H2'" H 0 1 N N N 200.880 91.159 -1.904 0.278 -1.425 1.748 "H2'" 6MZ 35 6MZ HA HA H 0 1 N N N 199.545 89.639 -3.063 0.931 -3.701 1.440 HA 6MZ 36 6MZ HB HB H 0 1 N Y N 200.802 88.484 -1.036 -1.012 -4.371 0.414 HB 6MZ 37 6MZ H3P H3P H 0 1 N Y N 198.615 92.236 5.018 -6.079 2.838 -1.060 H3P 6MZ 38 6MZ H6 H6 H 0 1 N N N 204.375 96.104 -0.021 5.050 2.893 0.850 H6 6MZ 39 6MZ H9 H9 H 0 1 N N N 203.529 95.461 1.958 7.350 3.172 0.705 H9 6MZ 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6MZ C4 C5 SING Y N 1 6MZ C4 N9 SING Y N 2 6MZ C2 N3 SING Y N 3 6MZ C4 N3 DOUB Y N 4 6MZ C2 N1 DOUB Y N 5 6MZ C5 C6 DOUB Y N 6 6MZ N1 C6 SING Y N 7 6MZ C6 N6 SING N N 8 6MZ N6 C9 SING N N 9 6MZ C5 N7 SING Y N 10 6MZ N9 C8 SING Y N 11 6MZ N7 C8 DOUB Y N 12 6MZ "O5'" "C5'" SING N N 13 6MZ "C1'" "H1'" SING N N 14 6MZ C9 H9C1 SING N N 15 6MZ C9 H9C2 SING N N 16 6MZ "C5'" "H5'1" SING N N 17 6MZ "C5'" "H5'2" SING N N 18 6MZ "C4'" "H4'" SING N N 19 6MZ "C3'" "H3'" SING N N 20 6MZ "C2'" "H2'" SING N N 21 6MZ "O2'" HA SING N N 22 6MZ "O3'" HB SING N N 23 6MZ O3P H3P SING N N 24 6MZ "C5'" "C4'" SING N N 25 6MZ "C4'" "O4'" SING N N 26 6MZ N9 "C1'" SING N N 27 6MZ "O4'" "C1'" SING N N 28 6MZ "C1'" "C2'" SING N N 29 6MZ "C2'" "O2'" SING N N 30 6MZ "C4'" "C3'" SING N N 31 6MZ "C2'" "C3'" SING N N 32 6MZ "C3'" "O3'" SING N N 33 6MZ O1P P SING N N 34 6MZ O2P P DOUB N N 35 6MZ "O5'" P SING N N 36 6MZ P O3P SING N N 37 6MZ C2 H2 SING N N 38 6MZ O1P H1P SING N N 39 6MZ C8 H8 SING N N 40 6MZ N6 H6 SING N N 41 6MZ C9 H9 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6MZ SMILES ACDLabs 12.01 "c1nc2c(c(n1)NC)ncn2C3OC(COP(O)(=O)O)C(C3O)O" 6MZ InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c1-12-9-6-10(14-3-13-9)16(4-15-6)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3-5,7-8,11,17-18H,2H2,1H3,(H,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1" 6MZ InChIKey InChI 1.03 WETVNPRPZIYMAC-IOSLPCCCSA-N 6MZ SMILES_CANONICAL CACTVS 3.385 "CNc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" 6MZ SMILES CACTVS 3.385 "CNc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" 6MZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" 6MZ SMILES "OpenEye OEToolkits" 1.7.6 "CNc1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6MZ "SYSTEMATIC NAME" ACDLabs 12.01 ;N-methyladenosine 5'-(dihydrogen phosphate) ; 6MZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6MZ "Create component" 2007-03-21 RCSB 6MZ "Modify aromatic_flag" 2011-06-04 RCSB 6MZ "Modify descriptor" 2011-06-04 RCSB 6MZ "Modify parent residue" 2011-12-15 RCSB 6MZ "Modify leaving atom flag" 2014-09-18 RCSB 6MZ "Modify one letter code" 2018-03-14 RCSB #