data_6NE # _chem_comp.id 6NE _chem_comp.name "(1S)-1,5-anhydro-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]-D-glucitol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-11 _chem_comp.pdbx_modified_date 2016-08-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6NE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JTU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6NE C6 C1 C 0 1 Y N N 36.289 24.886 31.763 2.734 0.015 -0.102 C6 6NE 1 6NE C8 C2 C 0 1 Y N N 37.935 25.873 33.212 5.061 -0.014 0.515 C8 6NE 2 6NE N5 N1 N 0 1 Y N N 34.649 24.002 30.026 0.226 0.010 -0.579 N5 6NE 3 6NE C9 C3 C 0 1 Y N N 36.896 26.039 34.256 5.410 0.210 -0.841 C9 6NE 4 6NE "O6'" O1 O 0 1 N N N 33.219 18.662 27.321 -4.281 3.552 -0.049 "O6'" 6NE 5 6NE "C6'" C4 C 0 1 N N N 32.204 19.509 27.896 -4.957 2.384 0.422 "C6'" 6NE 6 6NE "C5'" C5 C 0 1 N N R 32.405 20.988 27.516 -4.337 1.142 -0.220 "C5'" 6NE 7 6NE "C4'" C6 C 0 1 N N S 32.547 21.192 25.994 -5.137 -0.098 0.187 "C4'" 6NE 8 6NE "O4'" O2 O 0 1 N N N 31.370 20.743 25.322 -6.475 0.015 -0.303 "O4'" 6NE 9 6NE "O5'" O3 O 0 1 N N N 33.551 21.526 28.168 -2.985 1.001 0.222 "O5'" 6NE 10 6NE "C1'" C7 C 0 1 N N S 33.644 22.942 27.970 -2.301 -0.120 -0.340 "C1'" 6NE 11 6NE "C2'" C8 C 0 1 N N R 33.923 23.196 26.477 -3.020 -1.410 0.062 "C2'" 6NE 12 6NE "O2'" O4 O 0 1 N N N 34.008 24.587 26.221 -2.370 -2.529 -0.545 "O2'" 6NE 13 6NE "C3'" C9 C 0 1 N N R 32.775 22.638 25.625 -4.475 -1.343 -0.410 "C3'" 6NE 14 6NE "O3'" O5 O 0 1 N N N 33.054 22.737 24.216 -5.174 -2.511 0.026 "O3'" 6NE 15 6NE C1 C10 C 0 1 Y N N 34.750 23.428 28.820 -0.884 -0.154 0.172 C1 6NE 16 6NE N2 N2 N 0 1 Y N N 36.075 23.293 28.510 -0.532 -0.346 1.415 N2 6NE 17 6NE C3 C11 C 0 1 Y N N 36.796 23.819 29.519 0.802 -0.314 1.512 C3 6NE 18 6NE C4 C12 C 0 1 Y N N 35.909 24.276 30.466 1.307 -0.091 0.268 C4 6NE 19 6NE C7 C13 C 0 1 Y N N 37.615 25.305 31.995 3.708 -0.110 0.874 C7 6NE 20 6NE C12 C14 C 0 1 Y N N 39.231 26.311 33.476 6.079 -0.136 1.478 C12 6NE 21 6NE C13 C15 C 0 1 Y N N 39.548 26.846 34.715 7.382 -0.038 1.096 C13 6NE 22 6NE C14 C16 C 0 1 Y N N 38.582 26.975 35.706 7.724 0.182 -0.236 C14 6NE 23 6NE C15 C17 C 0 1 Y N N 37.252 26.596 35.473 6.765 0.305 -1.195 C15 6NE 24 6NE C10 C18 C 0 1 Y N N 35.590 25.621 33.993 4.396 0.333 -1.809 C10 6NE 25 6NE C11 C19 C 0 1 Y N N 35.302 25.061 32.755 3.092 0.237 -1.444 C11 6NE 26 6NE H1 H1 H 0 1 N N N 33.799 24.195 30.517 0.257 0.165 -1.536 H1 6NE 27 6NE H2 H2 H 0 1 N N N 33.062 17.761 27.577 -4.623 4.379 0.317 H2 6NE 28 6NE H3 H3 H 0 1 N N N 31.219 19.180 27.533 -4.859 2.320 1.506 H3 6NE 29 6NE H4 H4 H 0 1 N N N 32.242 19.415 28.991 -6.012 2.442 0.155 H4 6NE 30 6NE H5 H5 H 0 1 N N N 31.512 21.540 27.844 -4.355 1.246 -1.305 H5 6NE 31 6NE H6 H6 H 0 1 N N N 33.412 20.605 25.651 -5.154 -0.180 1.274 H6 6NE 32 6NE H7 H7 H 0 1 N N N 31.208 19.833 25.541 -7.040 -0.737 -0.081 H7 6NE 33 6NE H8 H8 H 0 1 N N N 32.704 23.438 28.253 -2.292 -0.033 -1.427 H8 6NE 34 6NE H9 H9 H 0 1 N N N 34.858 22.690 26.196 -2.993 -1.519 1.147 H9 6NE 35 6NE H10 H10 H 0 1 N N N 34.713 24.962 26.736 -2.774 -3.381 -0.333 H10 6NE 36 6NE H11 H11 H 0 1 N N N 31.864 23.207 25.860 -4.503 -1.285 -1.498 H11 6NE 37 6NE H12 H12 H 0 1 N N N 33.197 23.647 23.984 -4.807 -3.339 -0.315 H12 6NE 38 6NE H14 H14 H 0 1 N N N 37.873 23.872 29.574 1.377 -0.443 2.418 H14 6NE 39 6NE H15 H15 H 0 1 N N N 38.369 25.183 31.232 3.428 -0.280 1.903 H15 6NE 40 6NE H16 H16 H 0 1 N N N 39.991 26.233 32.713 5.828 -0.306 2.514 H16 6NE 41 6NE H17 H17 H 0 1 N N N 40.560 27.167 34.913 8.162 -0.132 1.837 H17 6NE 42 6NE H18 H18 H 0 1 N N N 38.860 27.373 36.671 8.765 0.256 -0.513 H18 6NE 43 6NE H19 H19 H 0 1 N N N 36.507 26.738 36.241 7.046 0.475 -2.224 H19 6NE 44 6NE H20 H20 H 0 1 N N N 34.817 25.731 34.739 4.655 0.504 -2.844 H20 6NE 45 6NE H21 H21 H 0 1 N N N 34.289 24.749 32.545 2.320 0.332 -2.193 H21 6NE 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6NE "O3'" "C3'" SING N N 1 6NE "O4'" "C4'" SING N N 2 6NE "C3'" "C4'" SING N N 3 6NE "C3'" "C2'" SING N N 4 6NE "C4'" "C5'" SING N N 5 6NE "O2'" "C2'" SING N N 6 6NE "C2'" "C1'" SING N N 7 6NE "O6'" "C6'" SING N N 8 6NE "C5'" "C6'" SING N N 9 6NE "C5'" "O5'" SING N N 10 6NE "C1'" "O5'" SING N N 11 6NE "C1'" C1 SING N N 12 6NE N2 C1 DOUB Y N 13 6NE N2 C3 SING Y N 14 6NE C1 N5 SING Y N 15 6NE C3 C4 DOUB Y N 16 6NE N5 C4 SING Y N 17 6NE C4 C6 SING N N 18 6NE C6 C7 DOUB Y N 19 6NE C6 C11 SING Y N 20 6NE C7 C8 SING Y N 21 6NE C11 C10 DOUB Y N 22 6NE C8 C12 DOUB Y N 23 6NE C8 C9 SING Y N 24 6NE C12 C13 SING Y N 25 6NE C10 C9 SING Y N 26 6NE C9 C15 DOUB Y N 27 6NE C13 C14 DOUB Y N 28 6NE C15 C14 SING Y N 29 6NE N5 H1 SING N N 30 6NE "O6'" H2 SING N N 31 6NE "C6'" H3 SING N N 32 6NE "C6'" H4 SING N N 33 6NE "C5'" H5 SING N N 34 6NE "C4'" H6 SING N N 35 6NE "O4'" H7 SING N N 36 6NE "C1'" H8 SING N N 37 6NE "C2'" H9 SING N N 38 6NE "O2'" H10 SING N N 39 6NE "C3'" H11 SING N N 40 6NE "O3'" H12 SING N N 41 6NE C3 H14 SING N N 42 6NE C7 H15 SING N N 43 6NE C12 H16 SING N N 44 6NE C13 H17 SING N N 45 6NE C14 H18 SING N N 46 6NE C15 H19 SING N N 47 6NE C10 H20 SING N N 48 6NE C11 H21 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6NE SMILES ACDLabs 12.01 "c2(cc1ccccc1cc2)c4nc(C3OC(CO)C(O)C(C3O)O)nc4" 6NE InChI InChI 1.03 "InChI=1S/C19H20N2O5/c22-9-14-15(23)16(24)17(25)18(26-14)19-20-8-13(21-19)12-6-5-10-3-1-2-4-11(10)7-12/h1-8,14-18,22-25H,9H2,(H,20,21)/t14-,15-,16+,17-,18-/m1/s1" 6NE InChIKey InChI 1.03 AXGMUNPLTDCCLX-UYTYNIKBSA-N 6NE SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2[nH]c(cn2)c3ccc4ccccc4c3" 6NE SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2[nH]c(cn2)c3ccc4ccccc4c3" 6NE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc2cc(ccc2c1)c3cnc([nH]3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O" 6NE SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc2cc(ccc2c1)c3cnc([nH]3)C4C(C(C(C(O4)CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6NE "SYSTEMATIC NAME" ACDLabs 12.01 "(1S)-1,5-anhydro-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]-D-glucitol" 6NE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(5-naphthalen-2-yl-1~{H}-imidazol-2-yl)oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6NE "Create component" 2016-05-11 EBI 6NE "Initial release" 2016-08-23 RCSB #