data_6NG # _chem_comp.id 6NG _chem_comp.name "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-[(2R)-2,3,3-trimethylbutyl]-L-leucinamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H38 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-09 _chem_comp.pdbx_modified_date 2016-12-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.528 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6NG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5JSS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6NG C1 C1 C 0 1 Y N N 16.245 41.329 -10.669 7.303 -1.283 1.616 C1 6NG 1 6NG C2 C2 C 0 1 Y N N 17.504 40.989 -11.167 8.526 -1.134 2.243 C2 6NG 2 6NG C3 C3 C 0 1 Y N N 17.600 40.447 -12.454 9.652 -0.833 1.500 C3 6NG 3 6NG C7 C4 C 0 1 N N N 13.708 41.558 -10.833 5.876 -1.308 -0.441 C7 6NG 4 6NG C9 C5 C 0 1 N N N 12.670 40.859 -8.795 3.985 -0.004 -1.088 C9 6NG 5 6NG C12 C6 C 0 1 N N N 11.987 40.084 -6.639 1.983 1.178 -1.816 C12 6NG 6 6NG C19 C7 C 0 1 N N N 9.326 37.927 -1.154 -3.439 2.447 1.091 C19 6NG 7 6NG C20 C8 C 0 1 N N N 9.593 38.323 0.302 -2.833 1.976 2.415 C20 6NG 8 6NG C21 C9 C 0 1 N N N 9.186 36.418 -1.308 -4.005 3.858 1.263 C21 6NG 9 6NG C22 C10 C 0 1 N N N 8.887 39.257 -3.855 -3.060 0.221 -0.788 C22 6NG 10 6NG C27 C11 C 0 1 N N N 8.446 42.689 -2.063 -5.524 -2.115 1.675 C27 6NG 11 6NG N16 N1 N 0 1 N N N 11.300 38.869 -4.239 -0.826 1.044 -1.275 N16 6NG 12 6NG C17 C12 C 0 1 N N S 10.102 38.394 -3.570 -1.898 1.028 -0.270 C17 6NG 13 6NG N24 N2 N 0 1 N N N 9.103 40.558 -4.040 -4.053 -0.144 0.047 N24 6NG 14 6NG C25 C13 C 0 1 N N N 7.997 41.477 -4.273 -5.215 -0.870 -0.469 C25 6NG 15 6NG C26 C14 C 0 1 N N R 8.229 42.825 -3.582 -6.186 -1.162 0.677 C26 6NG 16 6NG C28 C15 C 0 1 N N N 7.088 43.839 -3.954 -7.455 -1.808 0.119 C28 6NG 17 6NG C29 C16 C 0 1 N N N 5.729 43.407 -3.344 -8.425 -2.100 1.266 C29 6NG 18 6NG C30 C17 C 0 1 N N N 6.841 43.892 -5.495 -8.116 -0.855 -0.879 C30 6NG 19 6NG C31 C18 C 0 1 N N N 7.433 45.259 -3.460 -7.093 -3.116 -0.588 C31 6NG 20 6NG O23 O1 O 0 1 N N N 7.764 38.749 -3.857 -3.103 -0.100 -1.957 O23 6NG 21 6NG C18 C19 C 0 1 N N N 10.426 38.459 -2.069 -2.356 2.461 0.011 C18 6NG 22 6NG P13 P1 P 0 1 N N N 11.517 38.481 -5.929 0.688 1.017 -0.542 P13 6NG 23 6NG C6 C20 C 0 1 Y N N 15.068 41.157 -11.426 7.208 -1.139 0.244 C6 6NG 24 6NG C5 C21 C 0 1 Y N N 15.161 40.630 -12.699 8.334 -0.838 -0.499 C5 6NG 25 6NG C4 C22 C 0 1 Y N N 16.424 40.282 -13.203 9.556 -0.682 0.129 C4 6NG 26 6NG O14 O2 O 0 1 N N N 10.179 38.058 -6.494 0.864 -0.263 0.180 O14 6NG 27 6NG O15 O3 O 0 1 N N N 12.592 37.468 -6.150 0.804 2.240 0.498 O15 6NG 28 6NG N11 N3 N 0 1 N N N 12.742 39.939 -7.855 3.301 1.154 -1.178 N11 6NG 29 6NG O8 O4 O 0 1 N N N 13.536 40.555 -9.769 5.197 -0.026 -0.502 O8 6NG 30 6NG O10 O5 O 0 1 N N N 12.020 41.890 -8.740 3.508 -1.028 -1.536 O10 6NG 31 6NG H1 H1 H 0 1 N N N 16.170 41.737 -9.672 6.423 -1.518 2.196 H1 6NG 32 6NG H2 H2 H 0 1 N N N 18.390 41.142 -10.569 8.601 -1.251 3.314 H2 6NG 33 6NG H3 H3 H 0 1 N N N 18.558 40.162 -12.862 10.607 -0.716 1.990 H3 6NG 34 6NG H4 H4 H 0 1 N N N 13.735 42.578 -10.422 6.033 -1.685 -1.451 H4 6NG 35 6NG H5 H5 H 0 1 N N N 12.907 41.487 -11.584 5.266 -2.016 0.121 H5 6NG 36 6NG H6 H6 H 0 1 N N N 12.598 40.631 -5.906 1.904 0.349 -2.520 H6 6NG 37 6NG H7 H7 H 0 1 N N N 11.073 40.657 -6.855 1.854 2.120 -2.348 H7 6NG 38 6NG H8 H8 H 0 1 N N N 8.376 38.389 -1.461 -4.239 1.768 0.796 H8 6NG 39 6NG H9 H9 H 0 1 N N N 8.790 37.930 0.943 -1.972 2.597 2.661 H9 6NG 40 6NG H10 H10 H 0 1 N N N 10.557 37.904 0.625 -3.579 2.058 3.205 H10 6NG 41 6NG H11 H11 H 0 1 N N N 9.624 39.420 0.384 -2.517 0.937 2.320 H11 6NG 42 6NG H12 H12 H 0 1 N N N 8.390 36.053 -0.642 -3.205 4.537 1.559 H12 6NG 43 6NG H13 H13 H 0 1 N N N 8.930 36.178 -2.351 -4.437 4.194 0.320 H13 6NG 44 6NG H14 H14 H 0 1 N N N 10.137 35.933 -1.043 -4.777 3.849 2.033 H14 6NG 45 6NG H15 H15 H 0 1 N N N 8.607 43.685 -1.624 -4.620 -1.654 2.073 H15 6NG 46 6NG H16 H16 H 0 1 N N N 7.559 42.226 -1.606 -6.215 -2.322 2.492 H16 6NG 47 6NG H17 H17 H 0 1 N N N 9.327 42.059 -1.874 -5.266 -3.046 1.171 H17 6NG 48 6NG H18 H18 H 0 1 N N N 12.084 38.491 -3.746 -0.917 1.841 -1.887 H18 6NG 49 6NG H19 H19 H 0 1 N N N 9.890 37.352 -3.852 -1.525 0.579 0.651 H19 6NG 50 6NG H20 H20 H 0 1 N N N 10.039 40.910 -4.019 -3.997 0.073 0.991 H20 6NG 51 6NG H21 H21 H 0 1 N N N 7.893 41.644 -5.355 -5.716 -0.264 -1.224 H21 6NG 52 6NG H22 H22 H 0 1 N N N 7.072 41.029 -3.881 -4.888 -1.809 -0.916 H22 6NG 53 6NG H23 H23 H 0 1 N N N 9.159 43.239 -3.998 -6.444 -0.230 1.181 H23 6NG 54 6NG H24 H24 H 0 1 N N N 5.821 43.346 -2.250 -8.683 -1.168 1.769 H24 6NG 55 6NG H25 H25 H 0 1 N N N 4.958 44.146 -3.606 -9.330 -2.560 0.868 H25 6NG 56 6NG H26 H26 H 0 1 N N N 5.444 42.423 -3.744 -7.954 -2.779 1.977 H26 6NG 57 6NG H27 H27 H 0 1 N N N 6.038 44.611 -5.714 -7.425 -0.648 -1.696 H27 6NG 58 6NG H28 H28 H 0 1 N N N 7.764 44.208 -6.003 -9.021 -1.316 -1.276 H28 6NG 59 6NG H29 H29 H 0 1 N N N 6.548 42.894 -5.854 -8.374 0.076 -0.375 H29 6NG 60 6NG H30 H30 H 0 1 N N N 7.610 45.237 -2.375 -6.622 -3.795 0.123 H30 6NG 61 6NG H31 H31 H 0 1 N N N 8.339 45.615 -3.972 -7.997 -3.577 -0.985 H31 6NG 62 6NG H32 H32 H 0 1 N N N 6.596 45.938 -3.681 -6.402 -2.908 -1.405 H32 6NG 63 6NG H33 H33 H 0 1 N N N 11.336 37.868 -1.889 -2.759 2.898 -0.903 H33 6NG 64 6NG H34 H34 H 0 1 N N N 10.613 39.510 -1.804 -1.508 3.053 0.354 H34 6NG 65 6NG H35 H35 H 0 1 N N N 14.274 40.488 -13.299 8.260 -0.725 -1.571 H35 6NG 66 6NG H36 H36 H 0 1 N N N 16.493 39.874 -14.200 10.435 -0.447 -0.451 H36 6NG 67 6NG H37 H37 H 0 1 N N N 12.234 36.722 -6.617 0.626 3.107 0.107 H37 6NG 68 6NG H38 H38 H 0 1 N N N 13.324 39.137 -7.987 3.682 1.971 -0.821 H38 6NG 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6NG C4 C5 DOUB Y N 1 6NG C4 C3 SING Y N 2 6NG C5 C6 SING Y N 3 6NG C3 C2 DOUB Y N 4 6NG C6 C7 SING N N 5 6NG C6 C1 DOUB Y N 6 6NG C2 C1 SING Y N 7 6NG C7 O8 SING N N 8 6NG O8 C9 SING N N 9 6NG C9 O10 DOUB N N 10 6NG C9 N11 SING N N 11 6NG N11 C12 SING N N 12 6NG C12 P13 SING N N 13 6NG O14 P13 DOUB N N 14 6NG O15 P13 SING N N 15 6NG P13 N16 SING N N 16 6NG C30 C28 SING N N 17 6NG C25 N24 SING N N 18 6NG C25 C26 SING N N 19 6NG N16 C17 SING N N 20 6NG N24 C22 SING N N 21 6NG C28 C26 SING N N 22 6NG C28 C31 SING N N 23 6NG C28 C29 SING N N 24 6NG O23 C22 DOUB N N 25 6NG C22 C17 SING N N 26 6NG C26 C27 SING N N 27 6NG C17 C18 SING N N 28 6NG C18 C19 SING N N 29 6NG C21 C19 SING N N 30 6NG C19 C20 SING N N 31 6NG C1 H1 SING N N 32 6NG C2 H2 SING N N 33 6NG C3 H3 SING N N 34 6NG C7 H4 SING N N 35 6NG C7 H5 SING N N 36 6NG C12 H6 SING N N 37 6NG C12 H7 SING N N 38 6NG C19 H8 SING N N 39 6NG C20 H9 SING N N 40 6NG C20 H10 SING N N 41 6NG C20 H11 SING N N 42 6NG C21 H12 SING N N 43 6NG C21 H13 SING N N 44 6NG C21 H14 SING N N 45 6NG C27 H15 SING N N 46 6NG C27 H16 SING N N 47 6NG C27 H17 SING N N 48 6NG N16 H18 SING N N 49 6NG C17 H19 SING N N 50 6NG N24 H20 SING N N 51 6NG C25 H21 SING N N 52 6NG C25 H22 SING N N 53 6NG C26 H23 SING N N 54 6NG C29 H24 SING N N 55 6NG C29 H25 SING N N 56 6NG C29 H26 SING N N 57 6NG C30 H27 SING N N 58 6NG C30 H28 SING N N 59 6NG C30 H29 SING N N 60 6NG C31 H30 SING N N 61 6NG C31 H31 SING N N 62 6NG C31 H32 SING N N 63 6NG C18 H33 SING N N 64 6NG C18 H34 SING N N 65 6NG C5 H35 SING N N 66 6NG C4 H36 SING N N 67 6NG O15 H37 SING N N 68 6NG N11 H38 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6NG SMILES ACDLabs 12.01 "c1ccccc1COC(=O)NCP(NC(C(NCC(C)C(C)(C)C)=O)CC(C)C)(=O)O" 6NG InChI InChI 1.03 "InChI=1S/C22H38N3O5P/c1-16(2)12-19(20(26)23-13-17(3)22(4,5)6)25-31(28,29)15-24-21(27)30-14-18-10-8-7-9-11-18/h7-11,16-17,19H,12-15H2,1-6H3,(H,23,26)(H,24,27)(H2,25,28,29)/t17-,19-/m0/s1" 6NG InChIKey InChI 1.03 XXIXMIAOXNBYOY-HKUYNNGSSA-N 6NG SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NC[C@H](C)C(C)(C)C" 6NG SMILES CACTVS 3.385 "CC(C)C[CH](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NC[CH](C)C(C)(C)C" 6NG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@@H](CNC(=O)[C@H](CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O)C(C)(C)C" 6NG SMILES "OpenEye OEToolkits" 2.0.4 "CC(C)CC(C(=O)NCC(C)C(C)(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6NG "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-[(2R)-2,3,3-trimethylbutyl]-L-leucinamide" 6NG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{R})-2,3,3-trimethylbutyl]amino]pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6NG "Create component" 2016-05-09 EBI 6NG "Initial release" 2016-12-21 RCSB #