data_6NV # _chem_comp.id 6NV _chem_comp.name "~{N}-[(2~{R})-1-[[(2~{S})-3-(4-methoxyphenyl)-1-[[(2~{S},3~{S},4~{R})-4-methyl-3,5-bis(oxidanyl)-1-phenyl-pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-methyl-5~{H}-indene-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H43 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 613.743 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6NV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5L55 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6NV N1 N1 N 0 1 N N N N N N 10.361 -137.242 17.453 0.589 0.098 1.016 N1 6NV 1 6NV C4 C1 C 0 1 Y N N N N N 13.186 -138.144 17.113 0.401 2.651 -0.421 C4 6NV 2 6NV C5 C2 C 0 1 Y N N N N N 14.321 -137.604 16.510 0.212 2.914 -1.765 C5 6NV 3 6NV C6 C3 C 0 1 Y N N N N N 15.389 -137.192 17.298 -0.975 3.468 -2.202 C6 6NV 4 6NV C7 C4 C 0 1 Y N N N N N 15.323 -137.309 18.685 -1.979 3.762 -1.290 C7 6NV 5 6NV C10 C5 C 0 1 Y N N N N N 14.184 -137.854 19.283 -1.787 3.498 0.058 C10 6NV 6 6NV C15 C6 C 0 1 N N S N N N 10.558 -136.814 12.566 5.307 -0.400 -0.022 C15 6NV 7 6NV C17 C7 C 0 1 Y N N N N N 9.648 -134.500 12.708 5.529 -1.448 -2.259 C17 6NV 8 6NV C20 C8 C 0 1 Y N N N N N 7.825 -132.585 13.682 4.338 -3.187 -4.048 C20 6NV 9 6NV C21 C9 C 0 1 Y N N N N N 7.722 -133.918 14.068 4.040 -1.838 -4.093 C21 6NV 10 6NV C22 C10 C 0 1 Y N N N N N 8.620 -134.873 13.587 4.631 -0.969 -3.195 C22 6NV 11 6NV C26 C11 C 0 1 N N N N N N 9.681 -139.611 11.932 6.985 -1.470 2.214 C26 6NV 12 6NV C29 C12 C 0 1 N N N N N N 10.888 -139.249 24.129 -6.478 -3.040 2.308 C29 6NV 13 6NV C30 C13 C 0 1 N N N N N N 11.268 -137.766 23.973 -6.483 -2.021 1.198 C30 6NV 14 6NV C31 C14 C 0 1 N N N N N N 11.938 -137.102 24.921 -7.527 -1.776 0.358 C31 6NV 15 6NV C32 C15 C 0 1 N N N N N N 12.418 -137.472 26.120 -8.871 -2.365 0.260 C32 6NV 16 6NV C33 C16 C 0 1 N N N N N N 13.093 -136.560 26.928 -9.731 -1.951 -0.663 C33 6NV 17 6NV C34 C17 C 0 1 N N N N N N 13.264 -135.263 26.469 -9.335 -0.862 -1.628 C34 6NV 18 6NV C35 C18 C 0 1 N N N N N N 12.751 -134.938 25.222 -7.955 -0.256 -1.528 C35 6NV 19 6NV C36 C19 C 0 1 N N N N N N 12.116 -135.851 24.483 -7.107 -0.706 -0.573 C36 6NV 20 6NV C37 C20 C 0 1 N N N N N N 11.529 -135.693 23.272 -5.735 -0.345 -0.212 C37 6NV 21 6NV C38 C21 C 0 1 N N N N N N 11.032 -136.955 22.926 -5.372 -1.138 0.858 C38 6NV 22 6NV C39 C22 C 0 1 N N N N N N 10.358 -137.227 21.777 -4.067 -1.105 1.541 C39 6NV 23 6NV O40 O1 O 0 1 N N N N N N 9.914 -138.353 21.555 -3.883 -1.782 2.534 O40 6NV 24 6NV N41 N2 N 0 1 N N N N N N 10.249 -136.189 20.898 -3.077 -0.323 1.066 N41 6NV 25 6NV C42 C23 C 0 1 N N R N N N 9.563 -136.159 19.571 -1.747 -0.372 1.679 C42 6NV 26 6NV C43 C24 C 0 1 N N N N N N 8.297 -137.059 19.484 -1.709 0.566 2.888 C43 6NV 27 6NV C44 C25 C 0 1 N N N N N N 10.543 -136.271 18.373 -0.714 0.063 0.673 C44 6NV 28 6NV O45 O2 O 0 1 N N N N N N 11.400 -135.400 18.246 -1.054 0.382 -0.447 O45 6NV 29 6NV C2 C26 C 0 1 N N S N N N 11.253 -137.323 16.281 1.593 0.526 0.039 C2 6NV 30 6NV C3 C27 C 0 1 N N N N N N 12.109 -138.555 16.338 1.700 2.053 0.054 C3 6NV 31 6NV C11 C28 C 0 1 Y N N N N N 13.119 -138.265 18.499 -0.598 2.943 0.490 C11 6NV 32 6NV O8 O3 O 0 1 N N N N N N 16.398 -136.900 19.427 -3.148 4.308 -1.717 O8 6NV 33 6NV C9 C29 C 0 1 N N N N N N 16.133 -136.213 20.667 -4.136 4.584 -0.723 C9 6NV 34 6NV C12 C30 C 0 1 N N N N N N 10.455 -137.360 14.984 2.929 -0.074 0.395 C12 6NV 35 6NV O13 O4 O 0 1 N N N N N N 9.315 -137.817 14.963 3.032 -0.790 1.369 O13 6NV 36 6NV N14 N3 N 0 1 N N N N N N 11.135 -136.906 13.914 4.009 0.184 -0.368 N14 6NV 37 6NV C16 C31 C 0 1 N N N N N N 10.634 -135.349 12.137 6.173 -0.500 -1.280 C16 6NV 38 6NV C18 C32 C 0 1 Y N N N N N 9.732 -133.155 12.332 5.831 -2.796 -2.217 C18 6NV 39 6NV C19 C33 C 0 1 Y N N N N N 8.835 -132.206 12.809 5.236 -3.666 -3.112 C19 6NV 40 6NV C23 C34 C 0 1 N N S N N N 11.393 -137.605 11.530 6.007 0.488 1.009 C23 6NV 41 6NV O24 O5 O 0 1 N N N N N N 12.782 -137.417 11.816 5.151 0.670 2.139 O24 6NV 42 6NV C25 C35 C 0 1 N N R N N N 11.081 -139.185 11.339 7.308 -0.180 1.457 C25 6NV 43 6NV C27 C36 C 0 1 N N N N N N 12.129 -140.022 12.077 8.079 0.770 2.375 C27 6NV 44 6NV O28 O6 O 0 1 N N N N N N 11.910 -139.778 13.470 9.341 0.190 2.711 O28 6NV 45 6NV H1 H1 H 0 1 N N N N N N 9.622 -137.906 17.566 0.861 -0.157 1.911 H1 6NV 46 6NV H2 H2 H 0 1 N N N N N N 14.370 -137.506 15.436 0.994 2.685 -2.474 H2 6NV 47 6NV H3 H3 H 0 1 N N N N N N 16.273 -136.780 16.834 -1.122 3.673 -3.252 H3 6NV 48 6NV H4 H4 H 0 1 N N N N N N 14.134 -137.955 20.357 -2.567 3.725 0.770 H4 6NV 49 6NV H5 H5 H 0 1 N N N N N N 9.515 -137.162 12.555 5.158 -1.395 0.396 H5 6NV 50 6NV H6 H6 H 0 1 N N N N N N 7.126 -131.853 14.058 3.876 -3.866 -4.749 H6 6NV 51 6NV H7 H7 H 0 1 N N N N N N 6.938 -134.217 14.748 3.346 -1.463 -4.831 H7 6NV 52 6NV H8 H8 H 0 1 N N N N N N 8.523 -135.904 13.893 4.391 0.083 -3.225 H8 6NV 53 6NV H9 H9 H 0 1 N N N N N N 9.527 -140.689 11.773 7.913 -1.946 2.533 H9 6NV 54 6NV H10 H10 H 0 1 N N N N N N 9.658 -139.393 13.010 6.377 -1.236 3.088 H10 6NV 55 6NV H11 H11 H 0 1 N N N N N N 8.882 -139.048 11.427 6.436 -2.147 1.559 H11 6NV 56 6NV H12 H12 H 0 1 N N N N N N 11.229 -139.614 25.109 -6.032 -3.967 1.948 H12 6NV 57 6NV H13 H13 H 0 1 N N N N N N 9.796 -139.357 24.057 -5.896 -2.659 3.148 H13 6NV 58 6NV H14 H14 H 0 1 N N N N N N 11.368 -139.836 23.332 -7.501 -3.230 2.632 H14 6NV 59 6NV H15 H15 H 0 1 N N N N N N 12.279 -138.487 26.461 -9.162 -3.145 0.948 H15 6NV 60 6NV H16 H16 H 0 1 N N N N N N 13.476 -136.857 27.893 -10.714 -2.394 -0.723 H16 6NV 61 6NV H17 H17 H 0 1 N N N N N N 14.346 -135.068 26.438 -9.445 -1.261 -2.637 H17 6NV 62 6NV H18 H18 H 0 1 N N N N N N 12.791 -134.592 27.202 -10.057 -0.051 -1.523 H18 6NV 63 6NV H19 H19 H 0 1 N N N N N N 12.867 -133.933 24.844 -7.649 0.525 -2.208 H19 6NV 64 6NV H20 H20 H 0 1 N N N N N N 11.459 -134.783 22.694 -5.123 0.405 -0.691 H20 6NV 65 6NV H21 H21 H 0 1 N N N N N N 10.686 -135.335 21.179 -3.245 0.271 0.318 H21 6NV 66 6NV H22 H22 H 0 1 N N N N N N 9.165 -135.137 19.491 -1.533 -1.390 2.003 H22 6NV 67 6NV H23 H23 H 0 1 N N N N N N 7.674 -136.904 20.377 -1.923 1.585 2.564 H23 6NV 68 6NV H24 H24 H 0 1 N N N N N N 7.721 -136.795 18.585 -2.456 0.252 3.616 H24 6NV 69 6NV H25 H25 H 0 1 N N N N N N 8.601 -138.115 19.428 -0.719 0.530 3.344 H25 6NV 70 6NV H26 H26 H 0 1 N N N N N N 11.906 -136.438 16.264 1.298 0.192 -0.956 H26 6NV 71 6NV H27 H27 H 0 1 N N N N N N 11.573 -139.389 16.815 2.508 2.366 -0.607 H27 6NV 72 6NV H28 H28 H 0 1 N N N N N N 12.437 -138.857 15.332 1.908 2.392 1.068 H28 6NV 73 6NV H29 H29 H 0 1 N N N N N N 12.236 -138.680 18.963 -0.448 2.738 1.539 H29 6NV 74 6NV H30 H30 H 0 1 N N N N N N 17.085 -135.947 21.150 -5.018 5.016 -1.197 H30 6NV 75 6NV H31 H31 H 0 1 N N N N N N 15.557 -135.298 20.463 -4.412 3.658 -0.218 H31 6NV 76 6NV H32 H32 H 0 1 N N N N N N 15.555 -136.870 21.333 -3.733 5.288 0.005 H32 6NV 77 6NV H33 H33 H 0 1 N N N N N N 12.083 -136.616 14.044 3.926 0.756 -1.147 H33 6NV 78 6NV H34 H34 H 0 1 N N N N N N 11.623 -134.962 12.422 6.266 0.485 -1.736 H34 6NV 79 6NV H35 H35 H 0 1 N N N N N N 10.526 -135.309 11.043 7.162 -0.872 -1.012 H35 6NV 80 6NV H36 H36 H 0 1 N N N N N N 10.514 -132.846 11.654 6.532 -3.170 -1.486 H36 6NV 81 6NV H37 H37 H 0 1 N N N N N N 8.924 -131.175 12.500 5.472 -4.719 -3.079 H37 6NV 82 6NV H38 H38 H 0 1 N N N N N N 11.188 -137.144 10.552 6.230 1.457 0.562 H38 6NV 83 6NV H39 H39 H 0 1 N N N N N N 12.960 -136.491 11.927 4.306 1.089 1.928 H39 6NV 84 6NV H40 H40 H 0 1 N N N N N N 11.105 -139.421 10.265 7.916 -0.414 0.583 H40 6NV 85 6NV H41 H41 H 0 1 N N N N N N 11.996 -141.090 11.849 8.240 1.719 1.864 H41 6NV 86 6NV H42 H42 H 0 1 N N N N N N 13.143 -139.709 11.788 7.505 0.942 3.286 H42 6NV 87 6NV H43 H43 H 0 1 N N N N N N 12.537 -140.276 13.982 9.885 0.739 3.292 H43 6NV 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6NV C25 C23 SING N N 1 6NV C25 C26 SING N N 2 6NV C25 C27 SING N N 3 6NV C23 O24 SING N N 4 6NV C23 C15 SING N N 5 6NV C27 O28 SING N N 6 6NV C16 C15 SING N N 7 6NV C16 C17 SING N N 8 6NV C18 C17 DOUB Y N 9 6NV C18 C19 SING Y N 10 6NV C15 N14 SING N N 11 6NV C17 C22 SING Y N 12 6NV C19 C20 DOUB Y N 13 6NV C22 C21 DOUB Y N 14 6NV C20 C21 SING Y N 15 6NV N14 C12 SING N N 16 6NV O13 C12 DOUB N N 17 6NV C12 C2 SING N N 18 6NV C2 C3 SING N N 19 6NV C2 N1 SING N N 20 6NV C3 C4 SING N N 21 6NV C5 C4 DOUB Y N 22 6NV C5 C6 SING Y N 23 6NV C4 C11 SING Y N 24 6NV C6 C7 DOUB Y N 25 6NV N1 C44 SING N N 26 6NV O45 C44 DOUB N N 27 6NV C44 C42 SING N N 28 6NV C11 C10 DOUB Y N 29 6NV C7 C10 SING Y N 30 6NV C7 O8 SING N N 31 6NV O8 C9 SING N N 32 6NV C43 C42 SING N N 33 6NV C42 N41 SING N N 34 6NV N41 C39 SING N N 35 6NV O40 C39 DOUB N N 36 6NV C39 C38 SING N N 37 6NV C38 C37 DOUB N N 38 6NV C38 C30 SING N N 39 6NV C37 C36 SING N N 40 6NV C30 C29 SING N N 41 6NV C30 C31 DOUB N N 42 6NV C36 C31 SING N N 43 6NV C36 C35 DOUB N N 44 6NV C31 C32 SING N N 45 6NV C35 C34 SING N N 46 6NV C32 C33 DOUB N N 47 6NV C34 C33 SING N N 48 6NV N1 H1 SING N N 49 6NV C5 H2 SING N N 50 6NV C6 H3 SING N N 51 6NV C10 H4 SING N N 52 6NV C15 H5 SING N N 53 6NV C20 H6 SING N N 54 6NV C21 H7 SING N N 55 6NV C22 H8 SING N N 56 6NV C26 H9 SING N N 57 6NV C26 H10 SING N N 58 6NV C26 H11 SING N N 59 6NV C29 H12 SING N N 60 6NV C29 H13 SING N N 61 6NV C29 H14 SING N N 62 6NV C32 H15 SING N N 63 6NV C33 H16 SING N N 64 6NV C34 H17 SING N N 65 6NV C34 H18 SING N N 66 6NV C35 H19 SING N N 67 6NV C37 H20 SING N N 68 6NV N41 H21 SING N N 69 6NV C42 H22 SING N N 70 6NV C43 H23 SING N N 71 6NV C43 H24 SING N N 72 6NV C43 H25 SING N N 73 6NV C2 H26 SING N N 74 6NV C3 H27 SING N N 75 6NV C3 H28 SING N N 76 6NV C11 H29 SING N N 77 6NV C9 H30 SING N N 78 6NV C9 H31 SING N N 79 6NV C9 H32 SING N N 80 6NV N14 H33 SING N N 81 6NV C16 H34 SING N N 82 6NV C16 H35 SING N N 83 6NV C18 H36 SING N N 84 6NV C19 H37 SING N N 85 6NV C23 H38 SING N N 86 6NV O24 H39 SING N N 87 6NV C25 H40 SING N N 88 6NV C27 H41 SING N N 89 6NV C27 H42 SING N N 90 6NV O28 H43 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6NV InChI InChI 1.03 "InChI=1S/C36H43N3O6/c1-22(21-40)33(41)31(18-25-10-6-5-7-11-25)38-36(44)32(19-26-14-16-28(45-4)17-15-26)39-34(42)24(3)37-35(43)30-20-27-12-8-9-13-29(27)23(30)2/h5-7,9-17,20,22,24,31-33,40-41H,8,18-19,21H2,1-4H3,(H,37,43)(H,38,44)(H,39,42)/t22-,24-,31+,32+,33+/m1/s1" 6NV InChIKey InChI 1.03 RLIQDSPMEVUJOV-YRIWBWMDSA-N 6NV SMILES_CANONICAL CACTVS 3.385 "COc1ccc(C[C@H](NC(=O)[C@@H](C)NC(=O)C2=CC3=CCC=CC3=C2C)C(=O)N[C@@H](Cc4ccccc4)[C@@H](O)[C@H](C)CO)cc1" 6NV SMILES CACTVS 3.385 "COc1ccc(C[CH](NC(=O)[CH](C)NC(=O)C2=CC3=CCC=CC3=C2C)C(=O)N[CH](Cc4ccccc4)[CH](O)[CH](C)CO)cc1" 6NV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC1=C2C=CCC=C2C=C1C(=O)N[C@H](C)C(=O)N[C@@H](Cc3ccc(cc3)OC)C(=O)N[C@@H](Cc4ccccc4)[C@H]([C@H](C)CO)O" 6NV SMILES "OpenEye OEToolkits" 2.0.5 "CC1=C2C=CCC=C2C=C1C(=O)NC(C)C(=O)NC(Cc3ccc(cc3)OC)C(=O)NC(Cc4ccccc4)C(C(C)CO)O" # _pdbx_chem_comp_identifier.comp_id 6NV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R})-1-[[(2~{S})-3-(4-methoxyphenyl)-1-[[(2~{S},3~{S},4~{R})-4-methyl-3,5-bis(oxidanyl)-1-phenyl-pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-methyl-5~{H}-indene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6NV "Create component" 2016-05-30 EBI 6NV "Initial release" 2016-11-09 RCSB 6NV "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 6NV THR None "Covalent chemical modification" "Amino-acid backbone" N-terminal C25 N ? ? 2 6NV THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C23 OG1 ? ? #