data_6O2 # _chem_comp.id 6O2 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[6-[(3-ethynylphenyl)amino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl sulfamate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ABPA3 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.437 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6O2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5L6H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6O2 C8 C1 C 0 1 Y N N N N N -4.428 28.077 -10.074 -7.362 -0.060 0.176 C8 6O2 1 6O2 C5 C2 C 0 1 Y N N N N N -8.170 25.510 -11.891 -3.170 -0.549 -0.135 C5 6O2 2 6O2 C6 C3 C 0 1 Y N N N N N -6.505 27.013 -10.882 -5.383 -1.425 0.246 C6 6O2 3 6O2 N1 N1 N 0 1 Y N N N N N -10.527 24.765 -13.105 -1.590 1.423 -1.129 N1 6O2 4 6O2 C2 C4 C 0 1 N N R N N N -11.414 26.641 -15.297 1.483 0.954 -0.427 C2 6O2 5 6O2 N3 N2 N 0 1 N N N N N N -7.065 25.792 -11.160 -3.995 -1.544 0.363 N3 6O2 6 6O2 C4 C5 C 0 1 Y N N N N N -9.976 24.067 -12.129 -2.895 1.426 -1.297 C4 6O2 7 6O2 C13 C6 C 0 1 N N N N N N -2.160 27.571 -8.995 -8.494 2.286 0.264 C13 6O2 8 6O2 C12 C7 C 0 1 N N N N N N -3.282 27.826 -9.543 -7.984 1.229 0.224 C12 6O2 9 6O2 C7 C8 C 0 1 Y N N N N N -5.215 26.966 -10.354 -5.978 -0.173 0.294 C7 6O2 10 6O2 C9 C9 C 0 1 Y N N N N N -4.935 29.316 -10.307 -8.141 -1.208 0.016 C9 6O2 11 6O2 C10 C10 C 0 1 Y N N N N N -6.220 29.392 -10.831 -7.540 -2.449 -0.031 C10 6O2 12 6O2 C11 C11 C 0 1 Y N N N N N -7.007 28.281 -11.104 -6.166 -2.561 0.080 C11 6O2 13 6O2 N2 N3 N 0 1 Y N N N N N -8.821 24.410 -11.545 -3.674 0.473 -0.819 N2 6O2 14 6O2 C3 C12 C 0 1 Y N N N N N -9.886 25.847 -13.540 -0.997 0.447 -0.449 C3 6O2 15 6O2 C14 C13 C 0 1 Y N N N N N -8.699 26.251 -12.955 -1.782 -0.594 0.076 C14 6O2 16 6O2 N4 N4 N 0 1 Y N N N N N -8.329 27.379 -13.587 -0.941 -1.451 0.704 N4 6O2 17 6O2 C15 C14 C 0 1 Y N N N N N -9.291 27.677 -14.474 0.280 -1.012 0.600 C15 6O2 18 6O2 N N5 N 0 1 Y N N N N N -10.226 26.737 -14.447 0.298 0.156 -0.102 N 6O2 19 6O2 O1 O1 O 0 1 N N N N N N -10.984 26.327 -16.635 2.671 0.135 -0.372 O1 6O2 20 6O2 C16 C15 C 0 1 N N R N N N -12.229 27.905 -15.406 1.704 2.047 0.641 C16 6O2 21 6O2 O2 O2 O 0 1 N N N N N N -13.171 27.942 -14.350 1.183 3.300 0.192 O2 6O2 22 6O2 C17 C16 C 0 1 N N S N N N -12.885 27.759 -16.792 3.240 2.122 0.790 C17 6O2 23 6O2 O3 O3 O 0 1 N N N N N N -14.184 27.169 -16.795 3.715 3.424 0.439 O3 6O2 24 6O2 C1 C17 C 0 1 N N R N N N -11.972 26.782 -17.541 3.766 1.063 -0.209 C1 6O2 25 6O2 C C18 C 0 1 N N N N N N -11.352 27.432 -18.803 4.990 0.349 0.367 C 6O2 26 6O2 O O4 O 0 1 N N N N N N -12.369 27.528 -19.834 5.528 -0.540 -0.614 O 6O2 27 6O2 S S1 S 0 1 N N N N N N -12.515 28.831 -20.642 6.756 -1.308 -0.147 S 6O2 28 6O2 O4 O5 O 0 1 N N N N N N -13.679 28.741 -21.481 7.271 -1.977 -1.290 O4 6O2 29 6O2 O5 O6 O 0 1 N N N N N N -12.444 30.044 -19.914 7.523 -0.402 0.635 O5 6O2 30 6O2 N5 N6 N 0 1 N N N N N N -11.197 28.846 -21.543 6.231 -2.489 0.889 N5 6O2 31 6O2 H1 H1 H 0 1 N N N N N N -12.063 25.836 -14.921 1.377 1.404 -1.414 H1 6O2 32 6O2 H2 H2 H 0 1 N N N N N N -6.593 25.002 -10.769 -3.610 -2.323 0.794 H2 6O2 33 6O2 H3 H3 H 0 1 N N N N N N -10.481 23.177 -11.785 -3.345 2.234 -1.855 H3 6O2 34 6O2 H4 H4 H 0 1 N N N N N N -1.227 27.359 -8.539 -8.950 3.231 0.300 H4 6O2 35 6O2 H5 H5 H 0 1 N N N N N N -4.796 25.992 -10.147 -5.371 0.711 0.422 H5 6O2 36 6O2 H6 H6 H 0 1 N N N N N N -4.362 30.206 -10.093 -9.214 -1.124 -0.071 H6 6O2 37 6O2 H7 H7 H 0 1 N N N N N N -6.629 30.370 -11.037 -8.144 -3.335 -0.154 H7 6O2 38 6O2 H8 H8 H 0 1 N N N N N N -8.008 28.408 -11.489 -5.701 -3.535 0.043 H8 6O2 39 6O2 H9 H9 H 0 1 N N N N N N -9.302 28.548 -15.112 1.151 -1.502 1.011 H9 6O2 40 6O2 H10 H10 H 0 1 N N N N N N -11.571 28.786 -15.395 1.241 1.759 1.585 H10 6O2 41 6O2 H11 H11 H 0 1 N N N N N N -12.715 28.033 -13.521 1.296 4.022 0.824 H11 6O2 42 6O2 H12 H12 H 0 1 N N N N N N -12.887 28.732 -17.304 3.539 1.869 1.807 H12 6O2 43 6O2 H13 H13 H 0 1 N N N N N N -14.792 27.739 -16.340 3.367 4.132 0.998 H13 6O2 44 6O2 H14 H14 H 0 1 N N N N N N -12.586 25.931 -17.871 4.012 1.531 -1.163 H14 6O2 45 6O2 H15 H15 H 0 1 N N N N N N -10.518 26.813 -19.165 5.744 1.085 0.643 H15 6O2 46 6O2 H16 H16 H 0 1 N N N N N N -10.982 28.438 -18.556 4.697 -0.220 1.250 H16 6O2 47 6O2 H17 H17 H 0 1 N N N N N N -10.391 28.909 -20.954 5.285 -2.577 1.084 H17 6O2 48 6O2 H18 H18 H 0 1 N N N N N N -11.152 28.005 -22.081 6.869 -3.093 1.299 H18 6O2 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6O2 N5 S SING N N 1 6O2 O4 S DOUB N N 2 6O2 S O5 DOUB N N 3 6O2 S O SING N N 4 6O2 O C SING N N 5 6O2 C C1 SING N N 6 6O2 C1 C17 SING N N 7 6O2 C1 O1 SING N N 8 6O2 O3 C17 SING N N 9 6O2 C17 C16 SING N N 10 6O2 O1 C2 SING N N 11 6O2 C16 C2 SING N N 12 6O2 C16 O2 SING N N 13 6O2 C2 N SING N N 14 6O2 C15 N SING Y N 15 6O2 C15 N4 DOUB Y N 16 6O2 N C3 SING Y N 17 6O2 N4 C14 SING Y N 18 6O2 C3 N1 DOUB Y N 19 6O2 C3 C14 SING Y N 20 6O2 N1 C4 SING Y N 21 6O2 C14 C5 DOUB Y N 22 6O2 C4 N2 DOUB Y N 23 6O2 C5 N2 SING Y N 24 6O2 C5 N3 SING N N 25 6O2 N3 C6 SING N N 26 6O2 C11 C6 DOUB Y N 27 6O2 C11 C10 SING Y N 28 6O2 C6 C7 SING Y N 29 6O2 C10 C9 DOUB Y N 30 6O2 C7 C8 DOUB Y N 31 6O2 C9 C8 SING Y N 32 6O2 C8 C12 SING N N 33 6O2 C12 C13 TRIP N N 34 6O2 C2 H1 SING N N 35 6O2 N3 H2 SING N N 36 6O2 C4 H3 SING N N 37 6O2 C13 H4 SING N N 38 6O2 C7 H5 SING N N 39 6O2 C9 H6 SING N N 40 6O2 C10 H7 SING N N 41 6O2 C11 H8 SING N N 42 6O2 C15 H9 SING N N 43 6O2 C16 H10 SING N N 44 6O2 O2 H11 SING N N 45 6O2 C17 H12 SING N N 46 6O2 O3 H13 SING N N 47 6O2 C1 H14 SING N N 48 6O2 C H15 SING N N 49 6O2 C H16 SING N N 50 6O2 N5 H17 SING N N 51 6O2 N5 H18 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6O2 InChI InChI 1.03 "InChI=1S/C18H18N6O6S/c1-2-10-4-3-5-11(6-10)23-16-13-17(21-8-20-16)24(9-22-13)18-15(26)14(25)12(30-18)7-29-31(19,27)28/h1,3-6,8-9,12,14-15,18,25-26H,7H2,(H2,19,27,28)(H,20,21,23)/t12-,14-,15-,18-/m1/s1" 6O2 InChIKey InChI 1.03 LZNFQRSVDZCPTR-SCFUHWHPSA-N 6O2 SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(Nc4cccc(c4)C#C)ncnc23" 6O2 SMILES CACTVS 3.385 "N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(Nc4cccc(c4)C#C)ncnc23" 6O2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C#Cc1cccc(c1)Nc2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)COS(=O)(=O)N)O)O" 6O2 SMILES "OpenEye OEToolkits" 2.0.5 "C#Cc1cccc(c1)Nc2c3c(ncn2)n(cn3)C4C(C(C(O4)COS(=O)(=O)N)O)O" # _pdbx_chem_comp_identifier.comp_id 6O2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[6-[(3-ethynylphenyl)amino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6O2 "Create component" 2016-05-30 EBI 6O2 "Initial release" 2017-06-14 RCSB 6O2 "Modify synonyms" 2021-03-01 PDBE 6O2 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6O2 _pdbx_chem_comp_synonyms.name ABPA3 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 6O2 _pdbx_chem_comp_pcm.modified_residue_id GLY _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom N5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom C _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #