data_6OG # _chem_comp.id 6OG _chem_comp.name ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-04-30 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces G32 _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code G _chem_comp.three_letter_code 6OG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1T38 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6OG P P P 0 1 N N N -8.171 14.841 32.234 -5.299 0.927 -0.324 P 6OG 1 6OG OP1 OP1 O 0 1 N N N -9.585 14.590 32.655 -6.364 -0.022 0.071 OP1 6OG 2 6OG OP2 OP2 O 0 1 N N N -7.496 13.889 31.297 -5.122 2.043 0.824 OP2 6OG 3 6OG "O5'" "O5'" O 0 1 N N N -7.283 15.014 33.550 -3.914 0.130 -0.515 "O5'" 6OG 4 6OG N9 N9 N 0 1 Y N N -3.831 14.895 34.842 1.309 -0.007 0.110 N9 6OG 5 6OG C4 C4 C 0 1 Y N N -2.587 14.532 35.267 2.641 -0.184 -0.168 C4 6OG 6 6OG N3 N3 N 0 1 Y N N -2.036 14.855 36.453 3.360 -1.150 -0.731 N3 6OG 7 6OG C2 C2 C 0 1 Y N N -0.833 14.350 36.586 4.670 -1.023 -0.860 C2 6OG 8 6OG N2 N2 N 0 1 N N N -0.144 14.569 37.714 5.386 -2.051 -1.453 N2 6OG 9 6OG N1 N1 N 0 1 Y N N -0.220 13.593 35.622 5.323 0.054 -0.442 N1 6OG 10 6OG C6 C6 C 0 1 Y N N -0.776 13.258 34.392 4.682 1.065 0.131 C6 6OG 11 6OG O6 O6 O 0 1 N N N -0.076 12.511 33.514 5.357 2.160 0.554 O6 6OG 12 6OG C5 C5 C 0 1 Y N N -2.055 13.781 34.246 3.290 0.975 0.290 C5 6OG 13 6OG N7 N7 N 0 1 Y N N -2.948 13.677 33.197 2.338 1.786 0.814 N7 6OG 14 6OG C8 C8 C 0 1 Y N N -3.988 14.357 33.593 1.176 1.212 0.709 C8 6OG 15 6OG "C2'" "C2'" C 0 1 N N N -5.491 16.782 34.839 0.101 -1.996 0.941 "C2'" 6OG 16 6OG "C5'" "C5'" C 0 1 N N N -7.833 14.690 34.819 -3.343 -0.694 0.504 "C5'" 6OG 17 6OG "C4'" "C4'" C 0 1 N N R -7.090 15.408 35.913 -2.033 -1.300 -0.005 "C4'" 6OG 18 6OG "O4'" "O4'" O 0 1 N N N -5.791 14.816 36.074 -1.044 -0.266 -0.203 "O4'" 6OG 19 6OG "C1'" "C1'" C 0 1 N N R -4.786 15.688 35.604 0.228 -0.949 -0.188 "C1'" 6OG 20 6OG "C3'" "C3'" C 0 1 N N S -6.817 16.853 35.561 -1.421 -2.232 1.065 "C3'" 6OG 21 6OG "O3'" "O3'" O 0 1 N N N -6.689 17.582 36.753 -1.740 -3.596 0.782 "O3'" 6OG 22 6OG C C C 0 1 N N N 1.236 12.058 33.843 6.772 2.168 0.353 C 6OG 23 6OG HOP2 HOP2 H 0 0 N N N -8.097 13.189 31.069 -4.439 2.700 0.632 HOP2 6OG 24 6OG HN21 HN21 H 0 0 N N N -0.691 15.129 38.336 4.926 -2.846 -1.764 HN21 6OG 25 6OG HN22 HN22 H 0 0 N N N 0.067 13.694 38.151 6.348 -1.975 -1.556 HN22 6OG 26 6OG H8 H8 H 0 1 N N N -4.880 14.483 32.998 0.242 1.637 1.047 H8 6OG 27 6OG "H2'" "H2'" H 0 1 N N N -4.944 17.736 34.880 0.610 -2.919 0.665 "H2'" 6OG 28 6OG "H2''" "H2''" H 0 0 N N N -5.611 16.533 33.774 0.503 -1.602 1.875 "H2''" 6OG 29 6OG "H5'" "H5'" H 0 1 N N N -8.890 14.993 34.842 -3.144 -0.091 1.390 "H5'" 6OG 30 6OG "H5''" "H5''" H 0 0 N N N -7.753 13.605 34.981 -4.039 -1.494 0.757 "H5''" 6OG 31 6OG "H4'" "H4'" H 0 1 N N N -7.718 15.337 36.813 -2.204 -1.846 -0.933 "H4'" 6OG 32 6OG "H1'" "H1'" H 0 1 N N N -4.196 16.182 36.390 0.408 -1.442 -1.143 "H1'" 6OG 33 6OG "H3'" "H3'" H 0 1 N N N -7.602 17.334 34.959 -1.771 -1.955 2.059 "H3'" 6OG 34 6OG "HO3'" "HO3'" H 0 0 N N N -7.529 17.618 37.195 -1.332 -4.229 1.388 "HO3'" 6OG 35 6OG H1 H1 H 0 1 N N N 1.641 11.469 33.007 7.219 1.326 0.882 H1 6OG 36 6OG H2 H2 H 0 1 N N N 1.887 12.925 34.030 6.988 2.084 -0.712 H2 6OG 37 6OG H3 H3 H 0 1 N N N 1.192 11.431 34.746 7.188 3.100 0.736 H3 6OG 38 6OG OP3 OP3 O 0 1 N Y N -8.366 16.191 31.186 -5.702 1.642 -1.709 OP3 6OG 39 6OG HOP3 HOP3 H 0 0 N Y N -9.285 16.427 31.141 -6.529 2.142 -1.667 HOP3 6OG 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6OG P OP1 DOUB N N 1 6OG P OP2 SING N N 2 6OG P "O5'" SING N N 3 6OG OP2 HOP2 SING N N 4 6OG "O5'" "C5'" SING N N 5 6OG N9 C4 SING Y N 6 6OG N9 C8 SING Y N 7 6OG N9 "C1'" SING N N 8 6OG C4 N3 SING Y N 9 6OG C4 C5 DOUB Y N 10 6OG N3 C2 DOUB Y N 11 6OG C2 N2 SING N N 12 6OG C2 N1 SING Y N 13 6OG N2 HN21 SING N N 14 6OG N2 HN22 SING N N 15 6OG N1 C6 DOUB Y N 16 6OG C6 O6 SING N N 17 6OG C6 C5 SING Y N 18 6OG O6 C SING N N 19 6OG C5 N7 SING Y N 20 6OG N7 C8 DOUB Y N 21 6OG C8 H8 SING N N 22 6OG "C2'" "C1'" SING N N 23 6OG "C2'" "C3'" SING N N 24 6OG "C2'" "H2'" SING N N 25 6OG "C2'" "H2''" SING N N 26 6OG "C5'" "C4'" SING N N 27 6OG "C5'" "H5'" SING N N 28 6OG "C5'" "H5''" SING N N 29 6OG "C4'" "O4'" SING N N 30 6OG "C4'" "C3'" SING N N 31 6OG "C4'" "H4'" SING N N 32 6OG "O4'" "C1'" SING N N 33 6OG "C1'" "H1'" SING N N 34 6OG "C3'" "O3'" SING N N 35 6OG "C3'" "H3'" SING N N 36 6OG "O3'" "HO3'" SING N N 37 6OG C H1 SING N N 38 6OG C H2 SING N N 39 6OG C H3 SING N N 40 6OG P OP3 SING N N 41 6OG OP3 HOP3 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6OG SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2cnc1c2nc(nc1OC)N)CC3O" 6OG SMILES_CANONICAL CACTVS 3.370 "COc1nc(N)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" 6OG SMILES CACTVS 3.370 "COc1nc(N)nc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" 6OG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "COc1c2c(nc(n1)N)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" 6OG SMILES "OpenEye OEToolkits" 1.7.0 "COc1c2c(nc(n1)N)n(cn2)C3CC(C(O3)COP(=O)(O)O)O" 6OG InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c1-21-10-8-9(14-11(12)15-10)16(4-13-8)7-2-5(17)6(23-7)3-22-24(18,19)20/h4-7,17H,2-3H2,1H3,(H2,12,14,15)(H2,18,19,20)/t5-,6+,7+/m0/s1" 6OG InChIKey InChI 1.03 GFRAHVJOXXMIDI-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6OG "SYSTEMATIC NAME" ACDLabs 12.01 "9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-methoxy-9H-purin-2-amine" 6OG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-(2-azanyl-6-methoxy-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6OG "Create component" 2004-04-30 RCSB 6OG "Modify aromatic_flag" 2011-06-04 RCSB 6OG "Modify descriptor" 2011-06-04 RCSB #