data_6PH # _chem_comp.id 6PH _chem_comp.name "(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H61 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PHOSPHATIDIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-04-30 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 592.785 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6PH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3CX5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6PH P P P 0 1 N N N -2.748 6.310 40.075 -1.808 -3.778 2.042 P 6PH 1 6PH O11 O11 O 0 1 N N N -2.119 4.933 40.361 -1.322 -3.169 0.633 O11 6PH 2 6PH O12 O12 O 0 1 N N N -3.978 6.308 39.150 -0.628 -4.202 2.829 O12 6PH 3 6PH O13 O13 O 0 1 N N N -3.183 7.122 41.349 -2.623 -2.656 2.859 O13 6PH 4 6PH O14 O14 O 0 1 N N N -1.605 6.965 39.331 -2.761 -5.048 1.777 O14 6PH 5 6PH C1 C1 C 0 1 N N N -1.081 4.496 41.305 -0.484 -3.885 -0.277 C1 6PH 6 6PH C2 C2 C 0 1 N N R -0.707 2.964 41.238 -0.215 -3.021 -1.511 C2 6PH 7 6PH C3 C3 C 0 1 N N N -1.962 2.343 40.515 -1.546 -2.580 -2.124 C3 6PH 8 6PH O31 O31 O 0 1 N N N -1.752 0.949 40.392 -2.347 -1.913 -1.114 O31 6PH 9 6PH O32 O32 O 0 1 N N N -3.771 0.689 39.361 -3.927 -1.619 -2.631 O32 6PH 10 6PH C31 C31 C 0 1 N N N -2.761 0.247 39.784 -3.553 -1.462 -1.493 C31 6PH 11 6PH C32 C32 C 0 1 N N N -2.469 -1.270 39.680 -4.442 -0.760 -0.498 C32 6PH 12 6PH C33 C33 C 0 1 N N N -1.922 -1.750 38.322 -5.748 -0.350 -1.182 C33 6PH 13 6PH C34 C34 C 0 1 N N N -1.582 -3.251 38.338 -6.650 0.363 -0.172 C34 6PH 14 6PH C35 C35 C 0 1 N N N -0.073 -3.519 38.464 -7.956 0.772 -0.855 C35 6PH 15 6PH C36 C36 C 0 1 N N N 0.250 -4.873 37.844 -8.858 1.485 0.154 C36 6PH 16 6PH C37 C37 C 0 1 N N N 1.352 -5.616 38.607 -10.164 1.894 -0.529 C37 6PH 17 6PH C38 C38 C 0 1 N N N 2.363 -6.046 37.574 -11.066 2.607 0.481 C38 6PH 18 6PH C39 C39 C 0 1 N N N 2.648 -7.542 37.589 -12.373 3.017 -0.203 C39 6PH 19 6PH C3A C3A C 0 1 N N N 4.101 -7.707 38.051 -13.274 3.730 0.807 C3A 6PH 20 6PH C3B C3B C 0 1 N N N 5.101 -7.847 36.886 -14.581 4.139 0.124 C3B 6PH 21 6PH C3C C3C C 0 1 N N N 6.555 -7.796 37.393 -15.483 4.852 1.133 C3C 6PH 22 6PH C3D C3D C 0 1 N N N 6.996 -9.184 37.894 -16.789 5.262 0.450 C3D 6PH 23 6PH O21 O21 O 0 1 N N N 0.412 2.713 40.340 0.551 -1.850 -1.124 O21 6PH 24 6PH O22 O22 O 0 1 N N N 1.953 1.667 41.653 2.402 -2.996 -1.503 O22 6PH 25 6PH C21 C21 C 0 1 N N N 1.363 1.763 40.640 1.888 -1.957 -1.160 C21 6PH 26 6PH C22 C22 C 0 1 N N N 1.607 0.805 39.507 2.749 -0.783 -0.771 C22 6PH 27 6PH C23 C23 C 0 1 N N N 2.665 -0.231 39.872 4.225 -1.168 -0.899 C23 6PH 28 6PH C24 C24 C 0 1 N N N 3.157 -1.007 38.666 5.099 0.024 -0.505 C24 6PH 29 6PH C25 C25 C 0 1 N N N 4.496 -1.679 39.010 6.574 -0.361 -0.632 C25 6PH 30 6PH C26 C26 C 0 1 N N N 4.897 -2.574 37.799 7.448 0.831 -0.238 C26 6PH 31 6PH C27 C27 C 0 1 N N N 6.419 -2.820 37.786 8.924 0.446 -0.366 C27 6PH 32 6PH C28 C28 C 0 1 N N N 6.910 -3.004 36.335 9.798 1.638 0.028 C28 6PH 33 6PH C29 C29 C 0 1 N N N 8.444 -2.786 36.151 11.273 1.253 -0.100 C29 6PH 34 6PH C2A C2A C 0 1 N N N 9.086 -3.718 35.212 12.147 2.445 0.295 C2A 6PH 35 6PH C2B C2B C 0 1 N N N 10.419 -4.319 35.539 13.623 2.060 0.167 C2B 6PH 36 6PH C2C C2C C 0 1 N N N 10.430 -5.610 36.236 14.497 3.253 0.561 C2C 6PH 37 6PH C2D C2D C 0 1 N N N 11.680 -6.309 36.570 15.972 2.868 0.433 C2D 6PH 38 6PH C2E C2E C 0 1 N N N 12.469 -5.772 37.687 16.846 4.060 0.827 C2E 6PH 39 6PH C2F C2F C 0 1 N N N 13.149 -6.682 38.598 18.321 3.675 0.700 C2F 6PH 40 6PH HO13 HO13 H 0 0 N N N -3.271 6.531 42.087 -2.947 -2.954 3.720 HO13 6PH 41 6PH HO14 HO14 H 0 0 N N N -1.854 7.102 38.425 -3.556 -4.844 1.266 HO14 6PH 42 6PH H1 H1 H 0 1 N N N -0.169 5.070 41.084 0.461 -4.126 0.211 H1 6PH 43 6PH H1A H1A H 0 1 N N N -1.490 4.668 42.312 -0.981 -4.807 -0.581 H1A 6PH 44 6PH H2 H2 H 0 1 N N N -0.451 2.574 42.234 0.349 -3.598 -2.243 H2 6PH 45 6PH H3 H3 H 0 1 N N N -2.869 2.535 41.107 -1.355 -1.893 -2.949 H3 6PH 46 6PH H3A H3A H 0 1 N N N -2.093 2.798 39.522 -2.082 -3.454 -2.496 H3A 6PH 47 6PH H32 H32 H 0 1 N N N -1.717 -1.515 40.445 -4.661 -1.432 0.331 H32 6PH 48 6PH H32A H32A H 0 0 N N N -3.436 -1.777 39.816 -3.934 0.128 -0.122 H32A 6PH 49 6PH H33 H33 H 0 1 N N N -2.686 -1.570 37.551 -5.529 0.322 -2.011 H33 6PH 50 6PH H33A H33A H 0 0 N N N -0.998 -1.192 38.109 -6.255 -1.239 -1.558 H33A 6PH 51 6PH H34 H34 H 0 1 N N N -2.089 -3.712 39.198 -6.869 -0.310 0.658 H34 6PH 52 6PH H34A H34A H 0 0 N N N -1.917 -3.679 37.382 -6.143 1.251 0.204 H34A 6PH 53 6PH H35 H35 H 0 1 N N N 0.486 -2.731 37.938 -7.737 1.444 -1.685 H35 6PH 54 6PH H35A H35A H 0 0 N N N 0.214 -3.522 39.526 -8.463 -0.116 -1.232 H35A 6PH 55 6PH H36 H36 H 0 1 N N N -0.661 -5.490 37.858 -9.077 0.813 0.984 H36 6PH 56 6PH H36A H36A H 0 0 N N N 0.609 -4.698 36.819 -8.351 2.373 0.531 H36A 6PH 57 6PH H37 H37 H 0 1 N N N 1.818 -4.956 39.353 -9.945 2.567 -1.359 H37 6PH 58 6PH H37A H37A H 0 0 N N N 0.946 -6.481 39.153 -10.672 1.006 -0.905 H37A 6PH 59 6PH H38 H38 H 0 1 N N N 1.971 -5.782 36.581 -11.285 1.935 1.310 H38 6PH 60 6PH H38A H38A H 0 0 N N N 3.307 -5.532 37.808 -10.559 3.496 0.857 H38A 6PH 61 6PH H39 H39 H 0 1 N N N 1.964 -8.056 38.281 -12.153 3.689 -1.032 H39 6PH 62 6PH H39A H39A H 0 0 N N N 2.498 -7.983 36.593 -12.880 2.128 -0.579 H39A 6PH 63 6PH H3AA H3AA H 0 0 N N N 4.378 -6.818 38.637 -13.493 3.058 1.637 H3AA 6PH 64 6PH H3AB H3AB H 0 0 N N N 4.154 -8.634 38.641 -12.767 4.618 1.183 H3AB 6PH 65 6PH H3B H3B H 0 1 N N N 4.932 -8.811 36.385 -14.362 4.811 -0.706 H3B 6PH 66 6PH H3BA H3BA H 0 0 N N N 4.944 -7.011 36.188 -15.088 3.251 -0.252 H3BA 6PH 67 6PH H3C H3C H 0 1 N N N 7.214 -7.483 36.570 -15.702 4.180 1.963 H3C 6PH 68 6PH H3CA H3CA H 0 0 N N N 6.619 -7.078 38.224 -14.975 5.741 1.510 H3CA 6PH 69 6PH H3D H3D H 0 1 N N N 7.101 -9.867 37.038 -17.431 5.770 1.169 H3D 6PH 70 6PH H3DA H3DA H 0 0 N N N 7.962 -9.096 38.414 -16.570 5.934 -0.380 H3DA 6PH 71 6PH H3DB H3DB H 0 0 N N N 6.240 -9.580 38.588 -17.296 4.373 0.074 H3DB 6PH 72 6PH H22 H22 H 0 1 N N N 0.666 0.285 39.273 2.535 0.058 -1.430 H22 6PH 73 6PH H22A H22A H 0 0 N N N 1.967 1.378 38.640 2.536 -0.501 0.259 H22A 6PH 74 6PH H23 H23 H 0 1 N N N 3.522 0.290 40.325 4.439 -2.010 -0.240 H23 6PH 75 6PH H23A H23A H 0 0 N N N 2.207 -0.948 40.569 4.439 -1.451 -1.930 H23A 6PH 76 6PH H24 H24 H 0 1 N N N 2.418 -1.775 38.396 4.885 0.865 -1.164 H24 6PH 77 6PH H24A H24A H 0 0 N N N 3.295 -0.322 37.817 4.885 0.306 0.526 H24A 6PH 78 6PH H25 H25 H 0 1 N N N 5.268 -0.916 39.188 6.788 -1.202 0.027 H25 6PH 79 6PH H25A H25A H 0 0 N N N 4.400 -2.285 39.923 6.788 -0.643 -1.663 H25A 6PH 80 6PH H26 H26 H 0 1 N N N 4.377 -3.540 37.878 7.234 1.673 -0.897 H26 6PH 81 6PH H26A H26A H 0 0 N N N 4.612 -2.061 36.869 7.234 1.114 0.793 H26A 6PH 82 6PH H27 H27 H 0 1 N N N 6.931 -1.957 38.237 9.138 -0.395 0.293 H27 6PH 83 6PH H27A H27A H 0 0 N N N 6.643 -3.730 38.362 9.137 0.164 -1.397 H27A 6PH 84 6PH H28 H28 H 0 1 N N N 6.673 -4.032 36.024 9.583 2.480 -0.631 H28 6PH 85 6PH H28A H28A H 0 0 N N N 6.403 -2.242 35.726 9.584 1.921 1.059 H28A 6PH 86 6PH H29 H29 H 0 1 N N N 8.595 -1.766 35.768 11.487 0.412 0.560 H29 6PH 87 6PH H29A H29A H 0 0 N N N 8.907 -2.960 37.134 11.487 0.971 -1.130 H29A 6PH 88 6PH H2A H2A H 0 1 N N N 8.391 -4.563 35.100 11.933 3.287 -0.364 H2A 6PH 89 6PH H2AA H2AA H 0 0 N N N 9.295 -3.093 34.331 11.933 2.728 1.325 H2AA 6PH 90 6PH H2B H2B H 0 1 N N N 10.945 -4.468 34.584 13.837 1.219 0.826 H2B 6PH 91 6PH H2C H2C H 0 1 N N N 9.930 -5.427 37.199 14.282 4.094 -0.098 H2C 6PH 92 6PH H2D H2D H 0 1 N N N 11.410 -7.342 36.834 16.186 2.026 1.092 H2D 6PH 93 6PH H2DA H2DA H 0 0 N N N 12.320 -6.196 35.683 16.186 2.585 -0.597 H2DA 6PH 94 6PH H2E H2E H 0 1 N N N 13.254 -5.148 37.235 16.632 4.901 0.168 H2E 6PH 95 6PH H2F H2F H 0 1 N N N 13.320 -7.645 38.095 18.536 2.833 1.359 H2F 6PH 96 6PH H2FA H2FA H 0 0 N N N 14.114 -6.248 38.897 18.535 3.392 -0.331 H2FA 6PH 97 6PH H58 H58 H 0 1 N N N 10.884 -3.613 36.242 13.836 1.778 -0.864 H58 6PH 98 6PH H59 H59 H 0 1 N N N 9.972 -6.283 35.496 14.283 3.535 1.592 H59 6PH 99 6PH H60 H60 H 0 1 N N N 11.719 -5.279 38.323 16.632 4.342 1.858 H60 6PH 100 6PH H61 H61 H 0 1 N N N 12.526 -6.841 39.490 18.944 4.524 0.981 H61 6PH 101 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6PH P O11 SING N N 1 6PH P O13 SING N N 2 6PH O11 C1 SING N N 3 6PH O12 P DOUB N N 4 6PH O13 HO13 SING N N 5 6PH O14 P SING N N 6 6PH O14 HO14 SING N N 7 6PH C1 H1 SING N N 8 6PH C1 H1A SING N N 9 6PH C2 C1 SING N N 10 6PH C2 H2 SING N N 11 6PH C3 C2 SING N N 12 6PH C3 H3 SING N N 13 6PH C3 H3A SING N N 14 6PH O31 C3 SING N N 15 6PH O32 C31 DOUB N N 16 6PH C31 O31 SING N N 17 6PH C32 C31 SING N N 18 6PH C32 H32 SING N N 19 6PH C32 H32A SING N N 20 6PH C33 C32 SING N N 21 6PH C33 C34 SING N N 22 6PH C33 H33 SING N N 23 6PH C33 H33A SING N N 24 6PH C34 C35 SING N N 25 6PH C34 H34 SING N N 26 6PH C34 H34A SING N N 27 6PH C35 H35 SING N N 28 6PH C35 H35A SING N N 29 6PH C36 C35 SING N N 30 6PH C36 C37 SING N N 31 6PH C36 H36 SING N N 32 6PH C36 H36A SING N N 33 6PH C37 H37 SING N N 34 6PH C37 H37A SING N N 35 6PH C38 C37 SING N N 36 6PH C38 C39 SING N N 37 6PH C38 H38 SING N N 38 6PH C38 H38A SING N N 39 6PH C39 C3A SING N N 40 6PH C39 H39 SING N N 41 6PH C39 H39A SING N N 42 6PH C3A H3AA SING N N 43 6PH C3A H3AB SING N N 44 6PH C3B C3A SING N N 45 6PH C3B C3C SING N N 46 6PH C3B H3B SING N N 47 6PH C3B H3BA SING N N 48 6PH C3C C3D SING N N 49 6PH C3C H3C SING N N 50 6PH C3C H3CA SING N N 51 6PH C3D H3D SING N N 52 6PH C3D H3DA SING N N 53 6PH C3D H3DB SING N N 54 6PH O21 C2 SING N N 55 6PH O21 C21 SING N N 56 6PH C21 O22 DOUB N N 57 6PH C22 C21 SING N N 58 6PH C22 C23 SING N N 59 6PH C22 H22 SING N N 60 6PH C22 H22A SING N N 61 6PH C23 H23 SING N N 62 6PH C23 H23A SING N N 63 6PH C24 C23 SING N N 64 6PH C24 C25 SING N N 65 6PH C24 H24 SING N N 66 6PH C24 H24A SING N N 67 6PH C25 H25 SING N N 68 6PH C25 H25A SING N N 69 6PH C26 C25 SING N N 70 6PH C26 H26 SING N N 71 6PH C26 H26A SING N N 72 6PH C27 C26 SING N N 73 6PH C27 H27 SING N N 74 6PH C27 H27A SING N N 75 6PH C28 C27 SING N N 76 6PH C28 H28 SING N N 77 6PH C28 H28A SING N N 78 6PH C29 C28 SING N N 79 6PH C29 H29 SING N N 80 6PH C29 H29A SING N N 81 6PH C2A C29 SING N N 82 6PH C2A C2B SING N N 83 6PH C2A H2A SING N N 84 6PH C2A H2AA SING N N 85 6PH C2B C2C SING N N 86 6PH C2B H2B SING N N 87 6PH C2C C2D SING N N 88 6PH C2C H2C SING N N 89 6PH C2D C2E SING N N 90 6PH C2D H2D SING N N 91 6PH C2D H2DA SING N N 92 6PH C2E C2F SING N N 93 6PH C2E H2E SING N N 94 6PH C2F H2F SING N N 95 6PH C2F H2FA SING N N 96 6PH C2B H58 SING N N 97 6PH C2C H59 SING N N 98 6PH C2E H60 SING N N 99 6PH C2F H61 SING N N 100 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6PH SMILES ACDLabs 10.04 "O=P(O)(OCC(OC(=O)CCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCC)O" 6PH SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCC)CO[P](O)(O)=O" 6PH SMILES CACTVS 3.341 "CCCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCCCCCC)CO[P](O)(O)=O" 6PH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCC)COP(=O)(O)O" 6PH SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCCCCCCCC)COP(=O)(O)O" 6PH InChI InChI 1.03 "InChI=1S/C31H61O8P/c1-3-5-7-9-11-13-15-16-18-20-22-24-26-31(33)39-29(28-38-40(34,35)36)27-37-30(32)25-23-21-19-17-14-12-10-8-6-4-2/h29H,3-28H2,1-2H3,(H2,34,35,36)/t29-/m1/s1" 6PH InChIKey InChI 1.03 UOOPRMYYAWVCCZ-GDLZYMKVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6PH "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate" 6PH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R)-1-phosphonooxy-3-tridecanoyloxy-propan-2-yl] pentadecanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6PH "Create component" 2008-04-30 RCSB 6PH "Modify descriptor" 2011-06-04 RCSB 6PH "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6PH _pdbx_chem_comp_synonyms.name "PHOSPHATIDIC ACID" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##