data_6PO # _chem_comp.id 6PO _chem_comp.name "9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-propoxy-9H-purin-2-amine" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C13 H20 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-27 _chem_comp.pdbx_modified_date 2012-06-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6PO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ENK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6PO OP2 O2P O 0 1 N N N 21.493 -28.094 7.182 7.093 0.437 0.021 OP2 6PO 1 6PO P P P 0 1 N N N 22.631 -29.172 7.299 5.792 1.328 0.343 P 6PO 2 6PO OP1 O1P O 0 1 N N N 23.706 -28.783 8.376 5.565 2.287 -0.762 OP1 6PO 3 6PO "O5'" "O5'" O 0 1 N N N 23.259 -29.505 5.872 4.508 0.368 0.492 "O5'" 6PO 4 6PO "C5'" "C5'" C 0 1 N N N 24.579 -29.094 5.597 3.982 -0.403 -0.590 "C5'" 6PO 5 6PO "C4'" "C4'" C 0 1 N N R 24.959 -28.340 4.452 2.767 -1.198 -0.107 "C4'" 6PO 6 6PO "C3'" "C3'" C 0 1 N N S 26.333 -27.888 4.699 2.258 -2.134 -1.226 "C3'" 6PO 7 6PO "O3'" "O3'" O 0 1 N N N 27.120 -28.064 3.585 2.750 -3.461 -1.031 "O3'" 6PO 8 6PO "C2'" "C2'" C 0 1 N N N 26.218 -26.460 5.037 0.721 -2.099 -1.074 "C2'" 6PO 9 6PO "O4'" "O4'" O 0 1 N N N 24.140 -27.150 4.338 1.661 -0.311 0.164 "O4'" 6PO 10 6PO "C1'" "C1'" C 0 1 N N R 25.000 -26.049 4.301 0.483 -1.146 0.119 "C1'" 6PO 11 6PO N9 N9 N 0 1 Y N N 24.378 -24.885 4.884 -0.712 -0.330 -0.111 N9 6PO 12 6PO C8 C8 C 0 1 Y N N 23.239 -24.955 5.617 -0.749 0.902 -0.696 C8 6PO 13 6PO N7 N7 N 0 1 Y N N 22.825 -23.694 5.926 -1.974 1.337 -0.739 N7 6PO 14 6PO C5 C5 C 0 1 Y N N 23.736 -22.814 5.369 -2.800 0.415 -0.185 C5 6PO 15 6PO C4 C4 C 0 1 Y N N 24.724 -23.538 4.710 -2.000 -0.668 0.219 C4 6PO 16 6PO C6 C6 C 0 1 Y N N 23.803 -21.360 5.374 -4.184 0.340 0.038 C6 6PO 17 6PO N1 N1 N 0 1 Y N N 24.824 -20.716 4.741 -4.675 -0.743 0.624 N1 6PO 18 6PO C2 C2 C 0 1 Y N N 25.770 -21.469 4.113 -3.883 -1.742 0.996 C2 6PO 19 6PO N2 N2 N 0 1 N N N 26.849 -20.792 3.465 -4.446 -2.851 1.604 N2 6PO 20 6PO N3 N3 N 0 1 Y N N 25.739 -22.838 4.080 -2.576 -1.719 0.793 N3 6PO 21 6PO O6 O6 O 0 1 N N N 22.758 -20.649 6.014 -5.000 1.354 -0.337 O6 6PO 22 6PO C1X C1X C 0 1 N N N 22.708 -19.238 6.102 -6.395 1.195 -0.072 C1X 6PO 23 6PO C2X C2X C 0 1 N N N 21.673 -18.632 7.054 -7.152 2.432 -0.561 C2X 6PO 24 6PO C3X C3X C 0 1 N N N 21.109 -17.263 6.704 -8.646 2.262 -0.278 C3X 6PO 25 6PO HOP2 HO2P H 0 0 N N N 21.661 -27.387 7.794 7.302 -0.215 0.704 HOP2 6PO 26 6PO "H5'" H3 H 0 1 N N N 25.176 -30.017 5.556 3.682 0.264 -1.399 "H5'" 6PO 27 6PO "H5''" H4 H 0 0 N N N 24.891 -28.494 6.465 4.747 -1.091 -0.951 "H5''" 6PO 28 6PO "H4'" H5 H 0 1 N N N 24.906 -28.946 3.535 3.021 -1.774 0.783 "H4'" 6PO 29 6PO "H3'" H6 H 0 1 N N N 26.748 -28.434 5.559 2.554 -1.756 -2.204 "H3'" 6PO 30 6PO "HO3'" H7 H 0 0 N N N 28.002 -27.765 3.770 2.461 -4.091 -1.705 "HO3'" 6PO 31 6PO "H2'" H8 H 0 1 N N N 27.099 -25.898 4.692 0.257 -1.703 -1.977 "H2'" 6PO 32 6PO "H2''" H9 H 0 0 N N N 26.094 -26.317 6.121 0.336 -3.094 -0.852 "H2''" 6PO 33 6PO "H1'" H10 H 0 1 N N N 25.277 -25.827 3.260 0.384 -1.712 1.045 "H1'" 6PO 34 6PO H8 H11 H 0 1 N N N 22.739 -25.866 5.910 0.112 1.436 -1.069 H8 6PO 35 6PO HN1 H12 H 0 1 N N N 27.466 -21.463 3.054 -5.404 -2.889 1.752 HN1 6PO 36 6PO HN2 H13 H 0 1 N N N 26.486 -20.193 2.752 -3.883 -3.590 1.882 HN2 6PO 37 6PO H1X1 H14 H 0 0 N N N 23.700 -18.891 6.428 -6.766 0.313 -0.593 H1X1 6PO 38 6PO H1X2 H15 H 0 0 N N N 22.497 -18.851 5.094 -6.550 1.076 1.001 H1X2 6PO 39 6PO H2X1 H16 H 0 0 N N N 20.826 -19.332 7.108 -6.781 3.315 -0.040 H2X1 6PO 40 6PO H2X2 H17 H 0 0 N N N 22.145 -18.550 8.044 -6.997 2.551 -1.634 H2X2 6PO 41 6PO H3X1 H18 H 0 0 N N N 20.383 -16.958 7.472 -9.016 1.379 -0.799 H3X1 6PO 42 6PO H3X2 H19 H 0 0 N N N 21.928 -16.529 6.661 -8.800 2.142 0.795 H3X2 6PO 43 6PO H3X3 H20 H 0 0 N N N 20.609 -17.312 5.726 -9.184 3.143 -0.626 H3X3 6PO 44 6PO OP3 O3P O 0 1 N Y N ? ? ? 6.021 2.135 1.716 OP3 6PO 45 6PO HOP3 H1 H 0 0 N Y N ? ? ? 6.780 2.735 1.699 HOP3 6PO 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6PO N2 C2 SING N N 1 6PO "O3'" "C3'" SING N N 2 6PO N3 C2 DOUB Y N 3 6PO N3 C4 SING Y N 4 6PO C2 N1 SING Y N 5 6PO "C1'" "O4'" SING N N 6 6PO "C1'" N9 SING N N 7 6PO "C1'" "C2'" SING N N 8 6PO "O4'" "C4'" SING N N 9 6PO "C4'" "C3'" SING N N 10 6PO "C4'" "C5'" SING N N 11 6PO "C3'" "C2'" SING N N 12 6PO C4 N9 SING Y N 13 6PO C4 C5 DOUB Y N 14 6PO N1 C6 DOUB Y N 15 6PO N9 C8 SING Y N 16 6PO C5 C6 SING Y N 17 6PO C5 N7 SING Y N 18 6PO C6 O6 SING N N 19 6PO "C5'" "O5'" SING N N 20 6PO C8 N7 DOUB Y N 21 6PO "O5'" P SING N N 22 6PO O6 C1X SING N N 23 6PO C1X C2X SING N N 24 6PO C3X C2X SING N N 25 6PO OP2 P SING N N 26 6PO P OP1 DOUB N N 27 6PO OP2 HOP2 SING N N 28 6PO "C5'" "H5'" SING N N 29 6PO "C5'" "H5''" SING N N 30 6PO "C4'" "H4'" SING N N 31 6PO "C3'" "H3'" SING N N 32 6PO "O3'" "HO3'" SING N N 33 6PO "C2'" "H2'" SING N N 34 6PO "C2'" "H2''" SING N N 35 6PO "C1'" "H1'" SING N N 36 6PO C8 H8 SING N N 37 6PO N2 HN1 SING N N 38 6PO N2 HN2 SING N N 39 6PO C1X H1X1 SING N N 40 6PO C1X H1X2 SING N N 41 6PO C2X H2X1 SING N N 42 6PO C2X H2X2 SING N N 43 6PO C3X H3X1 SING N N 44 6PO C3X H3X2 SING N N 45 6PO C3X H3X3 SING N N 46 6PO P OP3 SING N N 47 6PO OP3 HOP3 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6PO SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2cnc1c2nc(nc1OCCC)N)CC3O" 6PO InChI InChI 1.03 "InChI=1S/C13H20N5O7P/c1-2-3-23-12-10-11(16-13(14)17-12)18(6-15-10)9-4-7(19)8(25-9)5-24-26(20,21)22/h6-9,19H,2-5H2,1H3,(H2,14,16,17)(H2,20,21,22)/t7-,8+,9+/m0/s1" 6PO InChIKey InChI 1.03 KGDNBXAYKVVLQA-DJLDLDEBSA-N 6PO SMILES_CANONICAL CACTVS 3.370 "CCCOc1nc(N)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" 6PO SMILES CACTVS 3.370 "CCCOc1nc(N)nc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" 6PO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCOc1c2c(nc(n1)N)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" 6PO SMILES "OpenEye OEToolkits" 1.7.6 "CCCOc1c2c(nc(n1)N)n(cn2)C3CC(C(O3)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6PO "SYSTEMATIC NAME" ACDLabs 12.01 "9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-propoxy-9H-purin-2-amine" 6PO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-(2-azanyl-6-propoxy-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6PO "Create component" 2012-04-27 RCSB 6PO "Modify atom id" 2012-04-28 RCSB #