data_6QD
#
_chem_comp.id 6QD
_chem_comp.name "5-(6-oxidanylidene-3~{H}-purin-9-yl)pentylphosphonic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H15 N4 O4 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 9-[5-(phosphonoheptyl]hypoxanthine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-05-23
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 286.224
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6QD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5K51
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6QD C15 C1 C 0 1 N N N -24.811 5.743 -16.215 3.905 0.289 0.824 C15 6QD 1
6QD O01 O1 O 0 1 N N N -19.571 12.913 -15.804 -6.233 -0.294 -1.252 O01 6QD 2
6QD C02 C2 C 0 1 N N N -19.707 11.915 -15.057 -5.242 -0.582 -0.601 C02 6QD 3
6QD N03 N1 N 0 1 N N N -19.433 12.025 -13.696 -5.080 -1.823 -0.101 N03 6QD 4
6QD C04 C3 C 0 1 N N N -19.589 10.893 -12.852 -4.025 -2.142 0.596 C04 6QD 5
6QD N05 N2 N 0 1 N N N -20.031 9.628 -13.406 -3.035 -1.272 0.864 N05 6QD 6
6QD C06 C4 C 0 1 Y N N -20.311 9.516 -14.798 -3.093 0.016 0.406 C06 6QD 7
6QD C07 C5 C 0 1 Y N N -20.162 10.611 -15.623 -4.195 0.410 -0.348 C07 6QD 8
6QD N08 N3 N 0 1 Y N N -20.495 10.213 -16.873 -4.013 1.708 -0.682 N08 6QD 9
6QD C09 C6 C 0 1 Y N N -20.830 8.949 -16.833 -2.881 2.121 -0.187 C09 6QD 10
6QD N10 N4 N 0 1 Y N N -20.727 8.507 -15.591 -2.284 1.106 0.500 N10 6QD 11
6QD C11 C7 C 0 1 N N N -21.009 7.171 -15.153 -0.999 1.173 1.201 C11 6QD 12
6QD C12 C8 C 0 1 N N N -22.537 6.907 -15.151 0.111 0.661 0.281 C12 6QD 13
6QD C13 C9 C 0 1 N N N -22.878 5.562 -14.533 1.453 0.731 1.013 C13 6QD 14
6QD C14 C10 C 0 1 N N N -24.152 4.881 -15.185 2.563 0.219 0.092 C14 6QD 15
6QD P16 P1 P 0 1 N N N -25.744 4.759 -17.408 5.227 -0.321 -0.272 P16 6QD 16
6QD O17 O2 O 0 1 N N N -25.414 5.232 -18.808 4.885 -1.679 -0.749 O17 6QD 17
6QD O18 O3 O 0 1 N N N -25.382 3.321 -17.268 5.378 0.669 -1.533 O18 6QD 18
6QD O19 O4 O 0 1 N N N -27.231 4.934 -17.152 6.617 -0.371 0.540 O19 6QD 19
6QD H1 H1 H 0 1 N N N -24.038 6.314 -16.750 4.112 1.322 1.104 H1 6QD 20
6QD H2 H2 H 0 1 N N N -25.498 6.439 -15.711 3.862 -0.329 1.721 H2 6QD 21
6QD H3 H3 H 0 1 N N N -19.378 10.975 -11.796 -3.943 -3.150 0.975 H3 6QD 22
6QD H4 H4 H 0 1 N N N -20.139 8.833 -12.810 -2.271 -1.561 1.388 H4 6QD 23
6QD H5 H5 H 0 1 N N N -21.142 8.359 -17.682 -2.481 3.118 -0.298 H5 6QD 24
6QD H6 H6 H 0 1 N N N -20.520 6.457 -15.832 -0.792 2.206 1.481 H6 6QD 25
6QD H7 H7 H 0 1 N N N -20.617 7.035 -14.134 -1.042 0.555 2.098 H7 6QD 26
6QD H8 H8 H 0 1 N N N -23.034 7.700 -14.573 -0.097 -0.372 0.001 H8 6QD 27
6QD H9 H9 H 0 1 N N N -22.902 6.925 -16.188 0.153 1.279 -0.616 H9 6QD 28
6QD H10 H10 H 0 1 N N N -23.071 5.709 -13.460 1.660 1.764 1.293 H10 6QD 29
6QD H11 H11 H 0 1 N N N -22.017 4.889 -14.662 1.410 0.113 1.909 H11 6QD 30
6QD H12 H12 H 0 1 N N N -24.881 4.666 -14.389 2.605 0.837 -0.804 H12 6QD 31
6QD H13 H13 H 0 1 N N N -23.841 3.940 -15.662 2.355 -0.813 -0.188 H13 6QD 32
6QD H14 H14 H 0 1 N N N -25.020 3.004 -18.087 5.602 1.579 -1.295 H14 6QD 33
6QD H15 H15 H 0 1 N N N -27.644 5.304 -17.923 7.366 -0.687 0.017 H15 6QD 34
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6QD O17 P16 DOUB N N 1
6QD P16 O18 SING N N 2
6QD P16 O19 SING N N 3
6QD P16 C15 SING N N 4
6QD N08 C09 DOUB Y N 5
6QD N08 C07 SING Y N 6
6QD C09 N10 SING Y N 7
6QD C15 C14 SING N N 8
6QD O01 C02 DOUB N N 9
6QD C07 C02 SING N N 10
6QD C07 C06 DOUB Y N 11
6QD N10 C11 SING N N 12
6QD N10 C06 SING Y N 13
6QD C14 C13 SING N N 14
6QD C11 C12 SING N N 15
6QD C12 C13 SING N N 16
6QD C02 N03 SING N N 17
6QD C06 N05 SING N N 18
6QD N03 C04 DOUB N N 19
6QD N05 C04 SING N N 20
6QD C15 H1 SING N N 21
6QD C15 H2 SING N N 22
6QD C04 H3 SING N N 23
6QD N05 H4 SING N N 24
6QD C09 H5 SING N N 25
6QD C11 H6 SING N N 26
6QD C11 H7 SING N N 27
6QD C12 H8 SING N N 28
6QD C12 H9 SING N N 29
6QD C13 H10 SING N N 30
6QD C13 H11 SING N N 31
6QD C14 H12 SING N N 32
6QD C14 H13 SING N N 33
6QD O18 H14 SING N N 34
6QD O19 H15 SING N N 35
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6QD InChI InChI 1.03 "InChI=1S/C10H15N4O4P/c15-10-8-9(11-6-12-10)14(7-13-8)4-2-1-3-5-19(16,17)18/h6-7H,1-5H2,(H,11,12,15)(H2,16,17,18)"
6QD InChIKey InChI 1.03 HKVZDTLGAPBOBY-UHFFFAOYSA-N
6QD SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)CCCCCn1cnc2C(=O)N=CNc12"
6QD SMILES CACTVS 3.385 "O[P](O)(=O)CCCCCn1cnc2C(=O)N=CNc12"
6QD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1CCCCCP(=O)(O)O)NC=NC2=O"
6QD SMILES "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1CCCCCP(=O)(O)O)NC=NC2=O"
#
_pdbx_chem_comp_identifier.comp_id 6QD
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "5-(6-oxidanylidene-3~{H}-purin-9-yl)pentylphosphonic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6QD "Create component" 2016-05-23 RCSB
6QD "Other modification" 2016-06-02 RCSB
6QD "Initial release" 2016-11-09 RCSB
6QD "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 6QD
_pdbx_chem_comp_synonyms.name 9-[5-(phosphonoheptyl]hypoxanthine
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##