data_6RH
#
_chem_comp.id 6RH
_chem_comp.name "4-(6-oxidanylidene-1~{H}-purin-9-yl)butylphosphonic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H13 N4 O4 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "9-(4-(phosphonobutil)hypoxanthine"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-06-02
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 272.198
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ?
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5KAP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6RH C11 C1 C 0 1 N N N -20.269 63.341 4.122 -0.297 -0.824 -1.015 C11 564 1
6RH C13 C2 C 0 1 N N N -18.047 63.094 5.341 2.071 -0.343 -0.378 C13 564 2
6RH C14 C3 C 0 1 N N N -17.330 64.423 5.109 3.006 0.011 0.780 C14 564 3
6RH C12 C4 C 0 1 N N N -19.558 63.275 5.473 0.638 -0.470 0.144 C12 564 4
6RH O01 O1 O 0 1 N N N -25.809 65.066 5.444 -5.891 -0.137 0.834 O01 564 5
6RH C02 C5 C 0 1 N N N -24.951 64.253 5.533 -4.847 0.325 0.406 C02 564 6
6RH N03 N1 N 0 1 N N N -25.182 63.047 6.274 -4.720 1.651 0.173 N03 564 7
6RH C04 C6 C 0 1 N N N -24.129 62.057 6.378 -3.554 2.155 -0.304 C04 564 8
6RH N05 N2 N 0 1 N N N -22.834 62.288 5.729 -2.521 1.399 -0.554 N05 564 9
6RH C06 C7 C 0 1 Y N N -22.598 63.538 4.960 -2.564 0.075 -0.350 C06 564 10
6RH C07 C8 C 0 1 Y N N -23.600 64.488 4.857 -3.733 -0.511 0.146 C07 564 11
6RH N08 N3 N 0 1 Y N N -23.109 65.491 4.119 -3.503 -1.840 0.254 N08 564 12
6RH C09 C9 C 0 1 Y N N -21.866 65.193 3.774 -2.289 -2.100 -0.137 C09 564 13
6RH N10 N4 N 0 1 Y N N -21.548 64.012 4.278 -1.669 -0.947 -0.515 N10 564 14
6RH P15 P1 P 0 1 N N N -16.186 64.840 6.517 4.713 0.163 0.158 P15 564 15
6RH O16 O2 O 0 1 N N N -15.031 65.664 6.001 5.093 -1.080 -0.549 O16 564 16
6RH O17 O3 O 0 1 N N N -15.664 63.567 7.137 4.804 1.408 -0.859 O17 564 17
6RH O18 O4 O 0 1 N N N -16.941 65.634 7.557 5.715 0.406 1.395 O18 564 18
6RH H1 H1 H 0 1 N N N -20.434 62.321 3.745 -0.254 -0.039 -1.769 H1 564 19
6RH H2 H2 H 0 1 N N N -19.647 63.900 3.408 0.014 -1.770 -1.457 H2 564 20
6RH H3 H3 H 0 1 N N N -17.842 62.427 4.491 2.114 0.443 -1.133 H3 564 21
6RH H4 H4 H 0 1 N N N -17.662 62.639 6.265 2.382 -1.289 -0.821 H4 564 22
6RH H5 H5 H 0 1 N N N -16.744 64.355 4.181 2.694 0.957 1.222 H5 564 23
6RH H6 H6 H 0 1 N N N -18.081 65.221 5.011 2.963 -0.774 1.535 H6 564 24
6RH H7 H7 H 0 1 N N N -19.753 64.210 6.018 0.327 0.476 0.586 H7 564 25
6RH H8 H8 H 0 1 N N N -19.965 62.426 6.043 0.595 -1.256 0.898 H8 564 26
6RH H9 H9 H 0 1 N N N -24.298 61.147 6.935 -3.478 3.217 -0.482 H9 564 27
6RH H11 H11 H 0 1 N N N -21.216 65.815 3.177 -1.839 -3.082 -0.155 H11 564 28
6RH H12 H12 H 0 1 N N N -14.716 63.549 7.074 4.568 2.258 -0.462 H12 564 29
6RH H13 H13 H 0 1 N N N -16.530 66.484 7.667 6.642 0.496 1.137 H13 564 30
6RH H14 H14 H 0 1 N N N -26.065 62.890 6.716 -5.466 2.245 0.347 H14 564 31
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6RH C09 N08 DOUB Y N 1
6RH C09 N10 SING Y N 2
6RH N08 C07 SING Y N 3
6RH C11 N10 SING N N 4
6RH C11 C12 SING N N 5
6RH N10 C06 SING Y N 6
6RH C07 C06 DOUB Y N 7
6RH C07 C02 SING N N 8
6RH C06 N05 SING N N 9
6RH C14 C13 SING N N 10
6RH C14 P15 SING N N 11
6RH C13 C12 SING N N 12
6RH O01 C02 DOUB N N 13
6RH C02 N03 SING N N 14
6RH N05 C04 DOUB N N 15
6RH O16 P15 DOUB N N 16
6RH N03 C04 SING N N 17
6RH P15 O17 SING N N 18
6RH P15 O18 SING N N 19
6RH C11 H1 SING N N 20
6RH C11 H2 SING N N 21
6RH C13 H3 SING N N 22
6RH C13 H4 SING N N 23
6RH C14 H5 SING N N 24
6RH C14 H6 SING N N 25
6RH C12 H7 SING N N 26
6RH C12 H8 SING N N 27
6RH C04 H9 SING N N 28
6RH C09 H11 SING N N 29
6RH O17 H12 SING N N 30
6RH O18 H13 SING N N 31
6RH N03 H14 SING N N 32
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6RH InChI InChI 1.03 "InChI=1S/C9H13N4O4P/c14-9-7-8(10-5-11-9)13(6-12-7)3-1-2-4-18(15,16)17/h5-6H,1-4H2,(H,10,11,14)(H2,15,16,17)"
6RH InChIKey InChI 1.03 SXKIHSHTTWSCGF-UHFFFAOYSA-N
6RH SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)CCCCn1cnc2C(=O)NC=Nc12"
6RH SMILES CACTVS 3.385 "O[P](O)(=O)CCCCn1cnc2C(=O)NC=Nc12"
6RH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1CCCCP(=O)(O)O)N=CNC2=O"
6RH SMILES "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1CCCCP(=O)(O)O)N=CNC2=O"
#
_pdbx_chem_comp_identifier.comp_id 6RH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "4-(6-oxidanylidene-1~{H}-purin-9-yl)butylphosphonic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6RH "Create component" 2016-06-02 RCSB
6RH "Initial release" 2016-11-09 RCSB
6RH "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 6RH
_pdbx_chem_comp_synonyms.name "9-(4-(phosphonobutil)hypoxanthine"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##