data_6RL # _chem_comp.id 6RL _chem_comp.name ;2-[[6-[(3~{R})-3-azanylpiperidin-1-yl]-3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]methyl]-4-fluoranyl-benzenecarboni trile ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H20 F N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SYR-472 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-06-06 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.382 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6RL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5KBY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6RL C5 C1 C 0 1 N N N 43.977 32.368 14.465 -0.006 2.375 0.950 C5 6RL 1 6RL C6 C2 C 0 1 N N N 43.443 33.626 14.628 0.264 1.284 0.172 C6 6RL 2 6RL C8 C3 C 0 1 N N N 44.884 35.395 15.239 2.221 0.326 1.333 C8 6RL 3 6RL C10 C4 C 0 1 N N N 45.341 35.884 17.638 4.365 0.787 0.136 C10 6RL 4 6RL C17 C5 C 0 1 Y N N 40.405 35.446 13.967 -0.525 -1.714 -0.560 C17 6RL 5 6RL C21 C6 C 0 1 Y N N 37.604 35.599 14.022 -0.635 -4.018 0.987 C21 6RL 6 6RL C22 C7 C 0 1 Y N N 38.242 34.703 14.850 -1.802 -3.474 0.494 C22 6RL 7 6RL C24 C8 C 0 1 N N N 40.243 33.663 15.730 -2.966 -1.737 -0.786 C24 6RL 8 6RL C26 C9 C 0 1 N N N 42.134 33.333 12.671 -1.998 1.200 -0.492 C26 6RL 9 6RL C1 C10 C 0 1 N N N 42.250 31.259 11.342 -3.654 2.785 0.319 C1 6RL 10 6RL N2 N1 N 0 1 N N N 42.651 32.091 12.491 -2.284 2.267 0.277 N2 6RL 11 6RL C3 C11 C 0 1 N N N 43.557 31.594 13.372 -1.319 2.871 0.997 C3 6RL 12 6RL O4 O1 O 0 1 N N N 44.016 30.479 13.204 -1.583 3.843 1.684 O4 6RL 13 6RL N7 N2 N 0 1 N N N 43.846 34.435 15.658 1.536 0.775 0.113 N7 6RL 14 6RL C9 C12 C 0 1 N N N 44.939 36.524 16.289 3.577 1.033 1.425 C9 6RL 15 6RL C11 C13 C 0 1 N N R 44.291 34.835 18.033 3.597 1.370 -1.052 C11 6RL 16 6RL N13 N3 N 0 1 N N N 42.983 35.494 18.211 4.368 1.161 -2.285 N13 6RL 17 6RL C14 C14 C 0 1 N N N 44.206 33.763 16.925 2.240 0.668 -1.172 C14 6RL 18 6RL N15 N4 N 0 1 N N N 42.500 34.091 13.727 -0.749 0.702 -0.549 N15 6RL 19 6RL C16 C15 C 0 1 N N N 41.919 35.437 13.898 -0.467 -0.461 -1.394 C16 6RL 20 6RL C18 C16 C 0 1 Y N N 39.743 36.349 13.157 0.637 -2.269 -0.066 C18 6RL 21 6RL C19 C17 C 0 1 Y N N 38.357 36.419 13.189 0.584 -3.419 0.706 C19 6RL 22 6RL F20 F1 F 0 1 N N N 37.722 37.300 12.392 1.726 -3.959 1.187 F20 6RL 23 6RL C23 C18 C 0 1 Y N N 39.651 34.618 14.835 -1.755 -2.313 -0.280 C23 6RL 24 6RL N25 N5 N 0 1 N N N 40.767 32.922 16.416 -3.926 -1.281 -1.186 N25 6RL 25 6RL O27 O2 O 0 1 N N N 41.311 33.779 11.880 -2.882 0.678 -1.144 O27 6RL 26 6RL H1 H1 H 0 1 N N N 44.705 31.984 15.164 0.778 2.846 1.525 H1 6RL 27 6RL H2 H2 H 0 1 N N N 45.859 34.890 15.183 1.617 0.579 2.205 H2 6RL 28 6RL H3 H3 H 0 1 N N N 44.630 35.813 14.254 2.373 -0.752 1.291 H3 6RL 29 6RL H4 H4 H 0 1 N N N 46.324 35.401 17.537 5.340 1.267 0.209 H4 6RL 30 6RL H5 H5 H 0 1 N N N 45.393 36.662 18.413 4.498 -0.285 -0.009 H5 6RL 31 6RL H6 H6 H 0 1 N N N 36.526 35.664 14.020 -0.669 -4.916 1.586 H6 6RL 32 6RL H7 H7 H 0 1 N N N 37.667 34.068 15.508 -2.750 -3.946 0.707 H7 6RL 33 6RL H8 H8 H 0 1 N N N 42.781 30.297 11.382 -4.205 2.289 1.118 H8 6RL 34 6RL H9 H9 H 0 1 N N N 41.165 31.081 11.379 -3.630 3.859 0.507 H9 6RL 35 6RL H10 H10 H 0 1 N N N 42.504 31.779 10.407 -4.144 2.593 -0.635 H10 6RL 36 6RL H11 H11 H 0 1 N N N 45.685 37.276 15.993 3.422 2.103 1.558 H11 6RL 37 6RL H12 H12 H 0 1 N N N 43.952 37.002 16.379 4.136 0.638 2.274 H12 6RL 38 6RL H13 H13 H 0 1 N N N 44.599 34.354 18.973 3.441 2.438 -0.896 H13 6RL 39 6RL H14 H14 H 0 1 N N N 43.053 36.185 18.931 5.268 1.613 -2.229 H14 6RL 40 6RL H15 H15 H 0 1 N N N 42.711 35.932 17.354 4.469 0.178 -2.486 H15 6RL 41 6RL H17 H17 H 0 1 N N N 43.437 33.020 17.184 2.394 -0.383 -1.418 H17 6RL 42 6RL H18 H18 H 0 1 N N N 45.179 33.261 16.817 1.650 1.146 -1.954 H18 6RL 43 6RL H19 H19 H 0 1 N N N 42.311 35.868 14.831 0.527 -0.360 -1.831 H19 6RL 44 6RL H20 H20 H 0 1 N N N 42.231 36.060 13.047 -1.209 -0.520 -2.191 H20 6RL 45 6RL H21 H21 H 0 1 N N N 40.303 36.999 12.501 1.589 -1.808 -0.282 H21 6RL 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6RL C1 N2 SING N N 1 6RL O27 C26 DOUB N N 2 6RL F20 C19 SING N N 3 6RL N2 C26 SING N N 4 6RL N2 C3 SING N N 5 6RL C26 N15 SING N N 6 6RL C18 C19 DOUB Y N 7 6RL C18 C17 SING Y N 8 6RL C19 C21 SING Y N 9 6RL O4 C3 DOUB N N 10 6RL C3 C5 SING N N 11 6RL N15 C16 SING N N 12 6RL N15 C6 SING N N 13 6RL C16 C17 SING N N 14 6RL C17 C23 DOUB Y N 15 6RL C21 C22 DOUB Y N 16 6RL C5 C6 DOUB N N 17 6RL C6 N7 SING N N 18 6RL C23 C22 SING Y N 19 6RL C23 C24 SING N N 20 6RL C8 N7 SING N N 21 6RL C8 C9 SING N N 22 6RL N7 C14 SING N N 23 6RL C24 N25 TRIP N N 24 6RL C9 C10 SING N N 25 6RL C14 C11 SING N N 26 6RL C10 C11 SING N N 27 6RL C11 N13 SING N N 28 6RL C5 H1 SING N N 29 6RL C8 H2 SING N N 30 6RL C8 H3 SING N N 31 6RL C10 H4 SING N N 32 6RL C10 H5 SING N N 33 6RL C21 H6 SING N N 34 6RL C22 H7 SING N N 35 6RL C1 H8 SING N N 36 6RL C1 H9 SING N N 37 6RL C1 H10 SING N N 38 6RL C9 H11 SING N N 39 6RL C9 H12 SING N N 40 6RL C11 H13 SING N N 41 6RL N13 H14 SING N N 42 6RL N13 H15 SING N N 43 6RL C14 H17 SING N N 44 6RL C14 H18 SING N N 45 6RL C16 H19 SING N N 46 6RL C16 H20 SING N N 47 6RL C18 H21 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6RL InChI InChI 1.03 "InChI=1S/C18H20FN5O2/c1-22-17(25)8-16(23-6-2-3-15(21)11-23)24(18(22)26)10-13-7-14(19)5-4-12(13)9-20/h4-5,7-8,15H,2-3,6,10-11,21H2,1H3/t15-/m1/s1" 6RL InChIKey InChI 1.03 IWYJYHUNXVAVAA-OAHLLOKOSA-N 6RL SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)C=C(N2CCC[C@@H](N)C2)N(Cc3cc(F)ccc3C#N)C1=O" 6RL SMILES CACTVS 3.385 "CN1C(=O)C=C(N2CCC[CH](N)C2)N(Cc3cc(F)ccc3C#N)C1=O" 6RL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CN1C(=O)C=C(N(C1=O)Cc2cc(ccc2C#N)F)N3CCC[C@H](C3)N" 6RL SMILES "OpenEye OEToolkits" 2.0.5 "CN1C(=O)C=C(N(C1=O)Cc2cc(ccc2C#N)F)N3CCCC(C3)N" # _pdbx_chem_comp_identifier.comp_id 6RL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "2-[[6-[(3~{R})-3-azanylpiperidin-1-yl]-3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]methyl]-4-fluoranyl-benzenecarbonitrile" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6RL "Create component" 2016-06-06 RCSB 6RL "Initial release" 2016-07-13 RCSB 6RL "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6RL _pdbx_chem_comp_synonyms.name SYR-472 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##