data_6U9
#
_chem_comp.id 6U9
_chem_comp.name nimodipine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H26 N2 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "~{O}3-(2-methoxyethyl) ~{O}5-propan-2-yl (4~{S})-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-06-27
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 418.440
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6U9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5KMF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6U9 C13 C1 C 0 1 N N N -4.411 134.527 18.258 2.318 -3.649 -1.532 C13 6U9 1
6U9 C12 C2 C 0 1 N N N -5.308 134.287 17.073 1.219 -2.809 -0.932 C12 6U9 2
6U9 C10 C3 C 0 1 N N N -7.701 131.352 16.625 -2.395 -3.364 -0.192 C10 6U9 3
6U9 C01 C4 C 0 1 N N N -12.165 131.624 10.535 -6.704 0.485 -0.789 C01 6U9 4
6U9 O02 O1 O 0 1 N N N -10.897 131.011 10.594 -5.664 -0.102 -0.005 O02 6U9 5
6U9 C03 C5 C 0 1 N N N -9.807 131.781 11.118 -4.992 0.821 0.854 C03 6U9 6
6U9 C04 C6 C 0 1 N N N -9.812 131.857 12.666 -3.905 0.086 1.641 C04 6U9 7
6U9 O05 O2 O 0 1 N N N -8.491 132.106 13.166 -2.903 -0.389 0.739 O05 6U9 8
6U9 C06 C7 C 0 1 N N N -8.519 132.868 14.314 -1.865 -1.064 1.276 C06 6U9 9
6U9 O07 O3 O 0 1 N N N -9.619 133.145 14.833 -1.813 -1.244 2.479 O07 6U9 10
6U9 C08 C8 C 0 1 N N N -7.233 133.248 15.078 -0.838 -1.563 0.442 C08 6U9 11
6U9 C09 C9 C 0 1 N N N -7.060 132.600 16.358 -1.058 -2.674 -0.278 C09 6U9 12
6U9 N11 N1 N 0 1 N N N -5.861 132.928 17.128 -0.085 -3.190 -1.090 N11 6U9 13
6U9 C14 C10 C 0 1 N N N -5.478 135.096 15.889 1.534 -1.699 -0.243 C14 6U9 14
6U9 C15 C11 C 0 1 N N S -6.506 134.588 14.786 0.472 -0.831 0.370 C15 6U9 15
6U9 C16 C12 C 0 1 Y N N -5.792 134.546 13.260 0.299 0.415 -0.461 C16 6U9 16
6U9 C17 C13 C 0 1 Y N N -5.559 135.687 12.558 0.545 1.656 0.095 C17 6U9 17
6U9 C18 C14 C 0 1 Y N N -4.864 135.663 11.292 0.386 2.798 -0.668 C18 6U9 18
6U9 C19 C15 C 0 1 Y N N -4.472 134.425 10.799 -0.018 2.699 -1.985 C19 6U9 19
6U9 C20 C16 C 0 1 Y N N -4.732 133.255 11.540 -0.263 1.457 -2.542 C20 6U9 20
6U9 C21 C17 C 0 1 Y N N -5.365 133.352 12.779 -0.100 0.315 -1.781 C21 6U9 21
6U9 N22 N2 N 1 1 N N N -4.554 136.883 10.446 0.648 4.128 -0.072 N22 6U9 22
6U9 O23 O4 O -1 1 N N N -5.215 138.117 10.807 1.004 4.215 1.089 O23 6U9 23
6U9 O24 O5 O 0 1 N N N -3.783 136.920 9.463 0.508 5.134 -0.744 O24 6U9 24
6U9 C25 C18 C 0 1 N N N -5.069 136.659 15.801 2.893 -1.339 -0.093 C25 6U9 25
6U9 O26 O6 O 0 1 N N N -5.559 137.269 14.908 3.764 -2.033 -0.584 O26 6U9 26
6U9 O27 O7 O 0 1 N N N -4.369 137.440 16.775 3.225 -0.227 0.595 O27 6U9 27
6U9 C28 C19 C 0 1 N N N -3.972 138.864 16.642 4.617 0.075 0.708 C28 6U9 28
6U9 C29 C20 C 0 1 N N N -4.501 139.805 17.767 4.804 1.590 0.805 C29 6U9 29
6U9 C30 C21 C 0 1 N N N -2.451 138.920 16.798 5.184 -0.590 1.964 C30 6U9 30
6U9 H1 H1 H 0 1 N N N -4.532 133.708 18.982 1.881 -4.506 -2.045 H1 6U9 31
6U9 H2 H2 H 0 1 N N N -3.364 134.568 17.923 2.886 -3.050 -2.243 H2 6U9 32
6U9 H3 H3 H 0 1 N N N -4.681 135.481 18.735 2.981 -3.999 -0.741 H3 6U9 33
6U9 H5 H5 H 0 1 N N N -7.451 131.021 17.644 -3.086 -2.908 -0.900 H5 6U9 34
6U9 H6 H6 H 0 1 N N N -8.791 131.473 16.536 -2.275 -4.421 -0.431 H6 6U9 35
6U9 H7 H7 H 0 1 N N N -7.356 130.600 15.900 -2.791 -3.264 0.819 H7 6U9 36
6U9 H8 H8 H 0 1 N N N -12.895 130.917 10.114 -7.457 0.917 -0.129 H8 6U9 37
6U9 H9 H9 H 0 1 N N N -12.479 131.915 11.548 -6.285 1.267 -1.422 H9 6U9 38
6U9 H10 H10 H 0 1 N N N -12.111 132.518 9.897 -7.165 -0.280 -1.414 H10 6U9 39
6U9 H11 H11 H 0 1 N N N -8.863 131.320 10.792 -4.537 1.609 0.255 H11 6U9 40
6U9 H12 H12 H 0 1 N N N -9.874 132.803 10.716 -5.709 1.259 1.548 H12 6U9 41
6U9 H13 H13 H 0 1 N N N -10.478 132.672 12.985 -3.452 0.769 2.359 H13 6U9 42
6U9 H14 H14 H 0 1 N N N -10.178 130.903 13.073 -4.347 -0.758 2.170 H14 6U9 43
6U9 H17 H17 H 0 1 N N N -5.419 132.229 17.690 -0.322 -3.829 -1.781 H17 6U9 44
6U9 H20 H20 H 0 1 N N N -7.287 135.360 14.718 0.782 -0.549 1.377 H20 6U9 45
6U9 H21 H21 H 0 1 N N N -5.901 136.631 12.955 0.861 1.734 1.125 H21 6U9 46
6U9 H22 H22 H 0 1 N N N -3.967 134.359 9.846 -0.143 3.591 -2.581 H22 6U9 47
6U9 H23 H23 H 0 1 N N N -4.443 132.290 11.151 -0.579 1.380 -3.571 H23 6U9 48
6U9 H24 H24 H 0 1 N N N -5.518 132.459 13.367 -0.291 -0.655 -2.215 H24 6U9 49
6U9 H25 H25 H 0 1 N N N -4.266 139.260 15.659 5.142 -0.300 -0.170 H25 6U9 50
6U9 H26 H26 H 0 1 N N N -4.155 140.832 17.579 4.279 1.965 1.684 H26 6U9 51
6U9 H27 H27 H 0 1 N N N -5.601 139.785 17.775 5.866 1.821 0.891 H27 6U9 52
6U9 H28 H28 H 0 1 N N N -4.121 139.462 18.741 4.400 2.064 -0.089 H28 6U9 53
6U9 H29 H29 H 0 1 N N N -2.111 139.962 16.706 6.246 -0.360 2.049 H29 6U9 54
6U9 H30 H30 H 0 1 N N N -2.169 138.528 17.787 4.658 -0.215 2.842 H30 6U9 55
6U9 H31 H31 H 0 1 N N N -1.979 138.310 16.014 5.051 -1.670 1.894 H31 6U9 56
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6U9 O24 N22 DOUB N N 1
6U9 N22 O23 SING N N 2
6U9 N22 C18 SING N N 3
6U9 C01 O02 SING N N 4
6U9 O02 C03 SING N N 5
6U9 C19 C18 DOUB Y N 6
6U9 C19 C20 SING Y N 7
6U9 C03 C04 SING N N 8
6U9 C18 C17 SING Y N 9
6U9 C20 C21 DOUB Y N 10
6U9 C17 C16 DOUB Y N 11
6U9 C04 O05 SING N N 12
6U9 C21 C16 SING Y N 13
6U9 O05 C06 SING N N 14
6U9 C16 C15 SING N N 15
6U9 C06 O07 DOUB N N 16
6U9 C06 C08 SING N N 17
6U9 C15 C08 SING N N 18
6U9 C15 C14 SING N N 19
6U9 O26 C25 DOUB N N 20
6U9 C08 C09 DOUB N N 21
6U9 C25 C14 SING N N 22
6U9 C25 O27 SING N N 23
6U9 C14 C12 DOUB N N 24
6U9 C09 C10 SING N N 25
6U9 C09 N11 SING N N 26
6U9 C28 O27 SING N N 27
6U9 C28 C30 SING N N 28
6U9 C28 C29 SING N N 29
6U9 C12 N11 SING N N 30
6U9 C12 C13 SING N N 31
6U9 C13 H1 SING N N 32
6U9 C13 H2 SING N N 33
6U9 C13 H3 SING N N 34
6U9 C10 H5 SING N N 35
6U9 C10 H6 SING N N 36
6U9 C10 H7 SING N N 37
6U9 C01 H8 SING N N 38
6U9 C01 H9 SING N N 39
6U9 C01 H10 SING N N 40
6U9 C03 H11 SING N N 41
6U9 C03 H12 SING N N 42
6U9 C04 H13 SING N N 43
6U9 C04 H14 SING N N 44
6U9 N11 H17 SING N N 45
6U9 C15 H20 SING N N 46
6U9 C17 H21 SING N N 47
6U9 C19 H22 SING N N 48
6U9 C20 H23 SING N N 49
6U9 C21 H24 SING N N 50
6U9 C28 H25 SING N N 51
6U9 C29 H26 SING N N 52
6U9 C29 H27 SING N N 53
6U9 C29 H28 SING N N 54
6U9 C30 H29 SING N N 55
6U9 C30 H30 SING N N 56
6U9 C30 H31 SING N N 57
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6U9 InChI InChI 1.03 "InChI=1S/C21H26N2O7/c1-12(2)30-21(25)18-14(4)22-13(3)17(20(24)29-10-9-28-5)19(18)15-7-6-8-16(11-15)23(26)27/h6-8,11-12,19,22H,9-10H2,1-5H3/t19-/m0/s1"
6U9 InChIKey InChI 1.03 UIAGMCDKSXEBJQ-IBGZPJMESA-N
6U9 SMILES_CANONICAL CACTVS 3.385 "COCCOC(=O)C1=C(C)NC(=C([C@H]1c2cccc(c2)[N+]([O-])=O)C(=O)OC(C)C)C"
6U9 SMILES CACTVS 3.385 "COCCOC(=O)C1=C(C)NC(=C([CH]1c2cccc(c2)[N+]([O-])=O)C(=O)OC(C)C)C"
6U9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC1=C([C@@H](C(=C(N1)C)C(=O)OC(C)C)c2cccc(c2)[N+](=O)[O-])C(=O)OCCOC"
6U9 SMILES "OpenEye OEToolkits" 2.0.5 "CC1=C(C(C(=C(N1)C)C(=O)OC(C)C)c2cccc(c2)[N+](=O)[O-])C(=O)OCCOC"
#
_pdbx_chem_comp_identifier.comp_id 6U9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "~{O}3-(2-methoxyethyl) ~{O}5-propan-2-yl (4~{S})-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6U9 "Create component" 2016-06-27 RCSB
6U9 "Initial release" 2016-08-31 RCSB
6U9 "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 6U9
_pdbx_chem_comp_synonyms.name "~{O}3-(2-methoxyethyl) ~{O}5-propan-2-yl (4~{S})-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##