data_6UB
#
_chem_comp.id 6UB
_chem_comp.name amlodipine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H25 Cl N2 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;~{O}3-ethyl ~{O}5-methyl
(4~{S})-2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-06-27
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 408.876
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6UB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5KMD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6UB CAA C1 C 0 1 N N N 38.936 41.631 15.867 -0.915 -5.110 -0.317 CAA 6UB 1
6UB CAL C2 C 0 1 N N N 38.095 40.586 15.136 -1.009 -3.961 0.688 CAL 6UB 2
6UB OAS O1 O 0 1 N N N 38.613 39.275 15.365 -0.759 -2.722 0.021 OAS 6UB 3
6UB CAV C3 C 0 1 N N N 37.711 38.184 15.195 -0.805 -1.602 0.771 CAV 6UB 4
6UB OAF O2 O 0 1 N N N 36.517 38.339 15.256 -1.050 -1.676 1.961 OAF 6UB 5
6UB CAY C4 C 0 1 N N N 38.305 36.767 14.942 -0.567 -0.342 0.175 CAY 6UB 6
6UB CAW C5 C 0 1 N N N 38.004 35.798 15.870 -1.553 0.255 -0.516 CAW 6UB 7
6UB NAP N1 N 0 1 N N N 38.843 34.535 15.734 -1.360 1.478 -1.100 NAP 6UB 8
6UB CAT C6 C 0 1 N N N 40.233 35.119 15.786 -0.319 2.273 -0.706 CAT 6UB 9
6UB CAX C7 C 0 1 N N N 40.641 35.858 14.703 0.719 1.761 -0.021 CAX 6UB 10
6UB CBB C8 C 0 1 N N S 39.412 36.344 13.901 0.780 0.304 0.334 CBB 6UB 11
6UB CBA C9 C 0 1 Y N N 39.470 37.070 12.409 1.765 -0.387 -0.574 CBA 6UB 12
6UB CAK C10 C 0 1 Y N N 38.512 38.048 12.113 1.567 -0.381 -1.942 CAK 6UB 13
6UB CAI C11 C 0 1 Y N N 38.440 38.700 10.887 2.470 -1.015 -2.774 CAI 6UB 14
6UB CAH C12 C 0 1 Y N N 39.311 38.394 9.846 3.572 -1.655 -2.239 CAH 6UB 15
6UB CAJ C13 C 0 1 Y N N 40.247 37.419 10.063 3.772 -1.661 -0.872 CAJ 6UB 16
6UB CAZ C14 C 0 1 Y N N 40.329 36.766 11.272 2.871 -1.022 -0.038 CAZ 6UB 17
6UB CLAG CL1 CL 0 0 N N N 41.643 35.556 11.203 3.122 -1.029 1.679 CLAG 6UB 18
6UB CAU C15 C 0 1 N N N 42.158 36.533 14.710 1.774 2.614 0.377 CAU 6UB 19
6UB OAE O3 O 0 1 N N N 42.528 36.942 13.699 1.736 3.799 0.100 OAE 6UB 20
6UB OAQ O4 O 0 1 N N N 43.010 36.681 15.874 2.822 2.115 1.064 OAQ 6UB 21
6UB CAB C16 C 0 1 N N N 44.162 35.845 16.052 3.852 3.034 1.435 CAB 6UB 22
6UB CAC C17 C 0 1 N N N 41.217 34.392 16.765 -0.335 3.742 -1.043 CAC 6UB 23
6UB C24 C18 C 0 1 N N N 37.259 35.911 17.095 -2.888 -0.431 -0.652 C24 6UB 24
6UB O25 O5 O 0 1 N N N 37.700 34.731 17.826 -3.887 0.333 0.026 O25 6UB 25
6UB C26 C19 C 0 1 N N N 38.506 35.002 18.970 -5.198 -0.234 -0.041 C26 6UB 26
6UB C27 C20 C 0 1 N N N 39.141 33.647 19.467 -6.180 0.663 0.715 C27 6UB 27
6UB N28 N2 N 0 1 N N N 40.581 33.802 19.690 -6.282 1.960 0.034 N28 6UB 28
6UB H1 H1 H 0 1 N N N 38.522 42.633 15.679 -1.105 -6.055 0.192 H1 6UB 29
6UB H2 H2 H 0 1 N N N 38.919 41.425 16.947 -1.655 -4.966 -1.104 H2 6UB 30
6UB H3 H3 H 0 1 N N N 39.973 41.588 15.502 0.083 -5.129 -0.755 H3 6UB 31
6UB H4 H4 H 0 1 N N N 38.112 40.798 14.057 -2.007 -3.942 1.127 H4 6UB 32
6UB H5 H5 H 0 1 N N N 37.059 40.635 15.503 -0.269 -4.105 1.475 H5 6UB 33
6UB H6 H6 H 0 1 N N N 38.553 33.583 15.637 -1.963 1.782 -1.796 H6 6UB 34
6UB H9 H9 H 0 1 N N N 39.002 35.370 13.596 1.111 0.200 1.367 H9 6UB 35
6UB H10 H10 H 0 1 N N N 37.793 38.309 12.875 0.706 0.119 -2.360 H10 6UB 36
6UB H11 H11 H 0 1 N N N 37.690 39.463 10.739 2.314 -1.010 -3.843 H11 6UB 37
6UB H12 H12 H 0 1 N N N 39.251 38.909 8.898 4.275 -2.154 -2.890 H12 6UB 38
6UB H13 H13 H 0 1 N N N 40.934 37.157 9.271 4.633 -2.162 -0.454 H13 6UB 39
6UB H14 H14 H 0 1 N N N 44.670 36.114 16.990 3.431 3.815 2.069 H14 6UB 40
6UB H15 H15 H 0 1 N N N 43.847 34.792 16.095 4.633 2.505 1.981 H15 6UB 41
6UB H16 H16 H 0 1 N N N 44.852 35.987 15.207 4.277 3.484 0.538 H16 6UB 42
6UB H17 H17 H 0 1 N N N 40.641 33.872 17.545 -1.245 3.978 -1.595 H17 6UB 43
6UB H18 H18 H 0 1 N N N 41.818 33.661 16.204 -0.307 4.326 -0.123 H18 6UB 44
6UB H19 H19 H 0 1 N N N 41.882 35.133 17.233 0.534 3.984 -1.654 H19 6UB 45
6UB H20 H20 H 0 1 N N N 37.515 36.835 17.635 -3.148 -0.515 -1.707 H20 6UB 46
6UB H21 H21 H 0 1 N N N 36.175 35.884 16.908 -2.831 -1.427 -0.212 H21 6UB 47
6UB H22 H22 H 0 1 N N N 39.304 35.710 18.702 -5.506 -0.313 -1.083 H22 6UB 48
6UB H23 H23 H 0 1 N N N 37.884 35.435 19.768 -5.188 -1.225 0.412 H23 6UB 49
6UB H24 H24 H 0 1 N N N 38.660 33.347 20.409 -7.161 0.187 0.739 H24 6UB 50
6UB H25 H25 H 0 1 N N N 38.975 32.870 18.707 -5.824 0.814 1.734 H25 6UB 51
6UB H26 H26 H 0 1 N N N 40.965 32.934 20.004 -6.549 1.842 -0.932 H26 6UB 52
6UB H27 H27 H 0 1 N N N 41.023 34.072 18.835 -6.926 2.571 0.514 H27 6UB 53
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6UB CAH CAJ DOUB Y N 1
6UB CAH CAI SING Y N 2
6UB CAJ CAZ SING Y N 3
6UB CAI CAK DOUB Y N 4
6UB CLAG CAZ SING N N 5
6UB CAZ CBA DOUB Y N 6
6UB CAK CBA SING Y N 7
6UB CBA CBB SING N N 8
6UB OAE CAU DOUB N N 9
6UB CBB CAX SING N N 10
6UB CBB CAY SING N N 11
6UB CAX CAU SING N N 12
6UB CAX CAT DOUB N N 13
6UB CAU OAQ SING N N 14
6UB CAY CAV SING N N 15
6UB CAY CAW DOUB N N 16
6UB CAL OAS SING N N 17
6UB CAL CAA SING N N 18
6UB CAV OAF DOUB N N 19
6UB CAV OAS SING N N 20
6UB NAP CAT SING N N 21
6UB NAP CAW SING N N 22
6UB CAT CAC SING N N 23
6UB CAW C24 SING N N 24
6UB OAQ CAB SING N N 25
6UB C24 O25 SING N N 26
6UB O25 C26 SING N N 27
6UB C26 C27 SING N N 28
6UB C27 N28 SING N N 29
6UB CAA H1 SING N N 30
6UB CAA H2 SING N N 31
6UB CAA H3 SING N N 32
6UB CAL H4 SING N N 33
6UB CAL H5 SING N N 34
6UB NAP H6 SING N N 35
6UB CBB H9 SING N N 36
6UB CAK H10 SING N N 37
6UB CAI H11 SING N N 38
6UB CAH H12 SING N N 39
6UB CAJ H13 SING N N 40
6UB CAB H14 SING N N 41
6UB CAB H15 SING N N 42
6UB CAB H16 SING N N 43
6UB CAC H17 SING N N 44
6UB CAC H18 SING N N 45
6UB CAC H19 SING N N 46
6UB C24 H20 SING N N 47
6UB C24 H21 SING N N 48
6UB C26 H22 SING N N 49
6UB C26 H23 SING N N 50
6UB C27 H24 SING N N 51
6UB C27 H25 SING N N 52
6UB N28 H26 SING N N 53
6UB N28 H27 SING N N 54
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6UB InChI InChI 1.03 "InChI=1S/C20H25ClN2O5/c1-4-28-20(25)18-15(11-27-10-9-22)23-12(2)16(19(24)26-3)17(18)13-7-5-6-8-14(13)21/h5-8,17,23H,4,9-11,22H2,1-3H3/t17-/m0/s1"
6UB InChIKey InChI 1.03 HTIQEAQVCYTUBX-KRWDZBQOSA-N
6UB SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)C1=C(COCCN)NC(=C([C@@H]1c2ccccc2Cl)C(=O)OC)C"
6UB SMILES CACTVS 3.385 "CCOC(=O)C1=C(COCCN)NC(=C([CH]1c2ccccc2Cl)C(=O)OC)C"
6UB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCOC(=O)C1=C(NC(=C([C@@H]1c2ccccc2Cl)C(=O)OC)C)COCCN"
6UB SMILES "OpenEye OEToolkits" 2.0.5 "CCOC(=O)C1=C(NC(=C(C1c2ccccc2Cl)C(=O)OC)C)COCCN"
#
_pdbx_chem_comp_identifier.comp_id 6UB
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "~{O}3-ethyl ~{O}5-methyl (4~{S})-2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6UB "Create component" 2016-06-27 RCSB
6UB "Initial release" 2016-08-31 RCSB
6UB "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 6UB
_pdbx_chem_comp_synonyms.name "~{O}3-ethyl ~{O}5-methyl (4~{S})-2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##