data_6V1
#
_chem_comp.id 6V1
_chem_comp.name "(2~{R})-2-azanyl-3-[(3~{R})-1-ethyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]sulfanyl-propanoic acid"
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C9 H14 N2 O4 S"
_chem_comp.mon_nstd_parent_comp_id CYS
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-07-01
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 246.283
_chem_comp.one_letter_code C
_chem_comp.three_letter_code 6V1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LF4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6V1 N N1 N 0 1 N N N N N N 18.609 221.258 -9.945 -3.419 1.612 -0.670 N 6V1 1
6V1 CA C1 C 0 1 N N R N N N 19.197 220.569 -11.060 -2.957 0.219 -0.599 CA 6V1 2
6V1 C C2 C 0 1 N N N N N N 20.378 219.756 -10.590 -4.046 -0.641 -0.011 C 6V1 3
6V1 O O1 O 0 1 N N N N N N 20.974 220.125 -9.629 -4.932 -0.136 0.637 O 6V1 4
6V1 CB C3 C 0 1 N N N N N N 19.849 221.528 -12.119 -1.711 0.139 0.286 CB 6V1 5
6V1 SG S1 S 0 1 N N N N N N 18.655 222.772 -12.466 -0.401 1.175 -0.421 SG 6V1 6
6V1 C1 C4 C 0 1 N N R N N N 18.751 222.726 -14.273 0.969 0.953 0.747 C1 6V1 7
6V1 C2 C5 C 0 1 N N N N N N 18.030 221.525 -14.892 1.511 -0.458 0.671 C2 6V1 8
6V1 N3 N2 N 0 1 N N N N N N 17.595 221.829 -16.141 2.794 -0.418 0.292 N3 6V1 9
6V1 C4 C6 C 0 1 N N N N N N 17.429 223.155 -16.231 3.271 0.815 0.079 C4 6V1 10
6V1 C5 C7 C 0 1 N N N N N N 18.164 223.886 -15.100 2.174 1.828 0.343 C5 6V1 11
6V1 C6 C8 C 0 1 N N N N N N 17.369 220.943 -17.301 3.609 -1.623 0.124 C6 6V1 12
6V1 O7 O2 O 0 1 N N N N N N 17.906 220.437 -14.353 0.882 -1.465 0.916 O7 6V1 13
6V1 O8 O3 O 0 1 N N N N N N 16.726 223.693 -17.099 4.402 1.080 -0.269 O8 6V1 14
6V1 C3 C9 C 0 1 N N N N N N 17.388 219.442 -17.092 3.487 -2.125 -1.316 C3 6V1 15
6V1 O1 O4 O 0 1 N Y N N N N 20.829 218.801 -11.398 -4.032 -1.969 -0.208 O1 6V1 16
6V1 H1 H1 H 0 1 N N N N N N 18.214 220.592 -9.312 -4.202 1.701 -1.300 H1 6V1 17
6V1 H2 H2 H 0 1 N N N N N N 19.312 221.790 -9.473 -3.650 1.964 0.247 H2 6V1 18
6V1 H4 H4 H 0 1 N N N N N N 18.463 219.919 -11.559 -2.715 -0.136 -1.600 H4 6V1 19
6V1 H5 H5 H 0 1 N N N N N N 20.095 220.971 -13.035 -1.954 0.494 1.288 H5 6V1 20
6V1 H6 H6 H 0 1 N N N N N N 20.763 221.982 -11.709 -1.369 -0.894 0.339 H6 6V1 21
6V1 H7 H7 H 0 1 N N N N N N 19.823 222.645 -14.507 0.648 1.187 1.762 H7 6V1 22
6V1 H8 H8 H 0 1 N N N N N N 18.960 224.533 -15.497 1.949 2.395 -0.560 H8 6V1 23
6V1 H9 H9 H 0 1 N N N N N N 17.468 224.489 -14.499 2.456 2.496 1.157 H9 6V1 24
6V1 H10 H10 H 0 1 N N N N N N 18.149 221.176 -18.041 4.652 -1.390 0.340 H10 6V1 25
6V1 H11 H11 H 0 1 N N N N N N 16.382 221.199 -17.715 3.260 -2.396 0.809 H11 6V1 26
6V1 H12 H12 H 0 1 N N N N N N 17.204 218.935 -18.051 2.445 -2.358 -1.533 H12 6V1 27
6V1 H13 H13 H 0 1 N N N N N N 18.370 219.139 -16.700 3.836 -1.352 -2.001 H13 6V1 28
6V1 H14 H14 H 0 1 N N N N N N 16.604 219.162 -16.373 4.094 -3.022 -1.441 H14 6V1 29
6V1 H15 H15 H 0 1 N N N N N N 21.668 218.488 -11.081 -4.752 -2.479 0.189 H15 6V1 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6V1 C6 C3 SING N N 1
6V1 C6 N3 SING N N 2
6V1 O8 C4 DOUB N N 3
6V1 C4 N3 SING N N 4
6V1 C4 C5 SING N N 5
6V1 N3 C2 SING N N 6
6V1 C5 C1 SING N N 7
6V1 C2 O7 DOUB N N 8
6V1 C2 C1 SING N N 9
6V1 C1 SG SING N N 10
6V1 SG CB SING N N 11
6V1 CB CA SING N N 12
6V1 CA C SING N N 13
6V1 CA N SING N N 14
6V1 C O DOUB N N 15
6V1 C O1 SING N N 16
6V1 N H1 SING N N 17
6V1 N H2 SING N N 18
6V1 CA H4 SING N N 19
6V1 CB H5 SING N N 20
6V1 CB H6 SING N N 21
6V1 C1 H7 SING N N 22
6V1 C5 H8 SING N N 23
6V1 C5 H9 SING N N 24
6V1 C6 H10 SING N N 25
6V1 C6 H11 SING N N 26
6V1 C3 H12 SING N N 27
6V1 C3 H13 SING N N 28
6V1 C3 H14 SING N N 29
6V1 O1 H15 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6V1 InChI InChI 1.03 "InChI=1S/C9H14N2O4S/c1-2-11-7(12)3-6(8(11)13)16-4-5(10)9(14)15/h5-6H,2-4,10H2,1H3,(H,14,15)/t5-,6+/m0/s1"
6V1 InChIKey InChI 1.03 RPPKKMNJEXCQNS-NTSWFWBYSA-N
6V1 SMILES_CANONICAL CACTVS 3.385 "CCN1C(=O)C[C@@H](SC[C@H](N)C(O)=O)C1=O"
6V1 SMILES CACTVS 3.385 "CCN1C(=O)C[CH](SC[CH](N)C(O)=O)C1=O"
6V1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCN1C(=O)C[C@H](C1=O)SC[C@@H](C(=O)O)N"
6V1 SMILES "OpenEye OEToolkits" 2.0.5 "CCN1C(=O)CC(C1=O)SCC(C(=O)O)N"
#
_pdbx_chem_comp_identifier.comp_id 6V1
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-3-[(3~{R})-1-ethyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]sulfanyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6V1 "Create component" 2016-07-01 EBI
6V1 "Other modification" 2016-07-01 EBI
6V1 "Initial release" 2016-08-17 RCSB
6V1 "Other modification" 2018-11-10 EBI
6V1 "Modify PCM" 2024-09-27 PDBE
#