data_6VA # _chem_comp.id 6VA _chem_comp.name "(3~{R},4~{S})-4-azanyl-2-methyl-5-phenyl-pentane-2,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 209.285 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6VA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LEY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6VA N N3 N 0 1 N N N Y Y N 8.648 192.555 38.237 -0.393 -0.768 1.057 N3 6VA 1 6VA C14 C14 C 0 1 N N N N N N 7.875 190.735 36.744 0.613 -0.342 -1.135 C14 6VA 2 6VA C15 C15 C 0 1 Y N N N N N 7.279 191.477 35.573 1.980 -0.109 -0.546 C15 6VA 3 6VA C16 C16 C 0 1 Y N N N N N 7.729 191.112 34.309 2.618 1.103 -0.736 C16 6VA 4 6VA C17 C17 C 0 1 Y N N N N N 7.310 191.738 33.164 3.870 1.318 -0.191 C17 6VA 5 6VA C18 C18 C 0 1 Y N N N N N 6.336 192.721 33.282 4.484 0.322 0.544 C18 6VA 6 6VA C19 C19 C 0 1 Y N N N N N 5.833 193.090 34.521 3.846 -0.889 0.735 C19 6VA 7 6VA C20 C20 C 0 1 Y N N N N N 6.325 192.471 35.663 2.595 -1.105 0.190 C20 6VA 8 6VA C22 C22 C 0 1 N N N N N N 7.903 190.842 40.703 -2.908 0.413 0.230 C22 6VA 9 6VA C24 C24 C 0 1 N N N N N N 6.548 191.479 40.976 -2.628 1.848 0.680 C24 6VA 10 6VA CA C13 C 0 1 N N S Y N N 7.793 191.384 38.133 -0.456 0.094 -0.131 C13 6VA 11 6VA C23 C23 C 0 1 N N N N N N 8.134 189.752 41.757 -4.286 0.346 -0.431 C23 6VA 12 6VA C C21 C 0 1 N N R Y N Y 8.087 190.364 39.244 -1.839 -0.025 -0.774 C211 6VA 13 6VA O6 O6 O 0 1 N N N N N N 8.886 191.850 40.953 -2.880 -0.456 1.364 O6 6VA 14 6VA O O5 O 0 1 N N N Y N Y 9.422 189.982 39.013 -2.072 -1.382 -1.156 O5 6VA 15 6VA H H1 H 0 1 N N N Y Y N 8.567 192.947 39.153 -0.553 -1.733 0.812 H1 6VA 16 6VA H2 H2 H 0 1 N Y N Y Y N 9.598 192.290 38.071 0.488 -0.658 1.537 H2 6VA 17 6VA H4 H4 H 0 1 N N N N N N 7.364 189.763 36.808 0.508 0.238 -2.051 H4 6VA 18 6VA H5 H5 H 0 1 N N N N N N 8.940 190.576 36.521 0.490 -1.401 -1.359 H5 6VA 19 6VA H6 H6 H 0 1 N N N N N N 8.438 190.302 34.226 2.138 1.881 -1.311 H6 6VA 20 6VA H7 H7 H 0 1 N N N N N N 7.724 191.475 32.202 4.368 2.264 -0.341 H7 6VA 21 6VA H8 H8 H 0 1 N N N N N N 5.963 193.207 32.393 5.463 0.490 0.969 H8 6VA 22 6VA H9 H9 H 0 1 N N N N N N 5.068 193.849 34.597 4.326 -1.668 1.310 H9 6VA 23 6VA H10 H10 H 0 1 N N N N N N 5.957 192.771 36.633 2.095 -2.050 0.343 H10 6VA 24 6VA H11 H11 H 0 1 N N N N N N 6.495 191.791 42.029 -1.646 1.896 1.151 H11 6VA 25 6VA H12 H12 H 0 1 N N N N N N 6.418 192.357 40.326 -2.648 2.511 -0.185 H12 6VA 26 6VA H13 H13 H 0 1 N N N N N N 5.751 190.749 40.769 -3.389 2.160 1.395 H13 6VA 27 6VA HA H14 H 0 1 N N N Y N N 6.752 191.713 38.270 -0.279 1.129 0.162 H14 6VA 28 6VA H15 H15 H 0 1 N N N N N N 7.984 190.175 42.761 -5.036 0.743 0.252 H15 6VA 29 6VA H16 H16 H 0 1 N N N N N N 7.422 188.929 41.595 -4.279 0.937 -1.347 H16 6VA 30 6VA H17 H17 H 0 1 N Y N N N N 9.162 189.370 41.670 -4.524 -0.691 -0.670 H17 6VA 31 6VA H18 H18 H 0 1 N Y N Y N Y 7.426 189.499 39.090 -1.886 0.614 -1.656 H18 6VA 32 6VA H19 H19 H 0 1 N N N N N N 8.798 192.165 41.845 -3.533 -0.237 2.043 H19 6VA 33 6VA H20 H20 H 0 1 N N N Y N Y 9.687 189.344 39.665 -2.045 -2.008 -0.419 H20 6VA 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6VA C17 C18 DOUB Y N 1 6VA C17 C16 SING Y N 2 6VA C18 C19 SING Y N 3 6VA C16 C15 DOUB Y N 4 6VA C19 C20 DOUB Y N 5 6VA C15 C20 SING Y N 6 6VA C15 C14 SING N N 7 6VA C14 CA SING N N 8 6VA CA N SING N N 9 6VA CA C SING N N 10 6VA O C SING N N 11 6VA C C22 SING N N 12 6VA C22 O6 SING N N 13 6VA C22 C24 SING N N 14 6VA C22 C23 SING N N 15 6VA N H SING N N 16 6VA N H2 SING N N 17 6VA C14 H4 SING N N 18 6VA C14 H5 SING N N 19 6VA C16 H6 SING N N 20 6VA C17 H7 SING N N 21 6VA C18 H8 SING N N 22 6VA C19 H9 SING N N 23 6VA C20 H10 SING N N 24 6VA C24 H11 SING N N 25 6VA C24 H12 SING N N 26 6VA C24 H13 SING N N 27 6VA CA HA SING N N 28 6VA C23 H15 SING N N 29 6VA C23 H16 SING N N 30 6VA C23 H17 SING N N 31 6VA C H18 SING N N 32 6VA O6 H19 SING N N 33 6VA O H20 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6VA InChI InChI 1.03 "InChI=1S/C12H19NO2/c1-12(2,15)11(14)10(13)8-9-6-4-3-5-7-9/h3-7,10-11,14-15H,8,13H2,1-2H3/t10-,11+/m0/s1" 6VA InChIKey InChI 1.03 YCMFJEDEBDIJGE-WDEREUQCSA-N 6VA SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)[C@H](O)[C@@H](N)Cc1ccccc1" 6VA SMILES CACTVS 3.385 "CC(C)(O)[CH](O)[CH](N)Cc1ccccc1" 6VA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(C)([C@@H]([C@H](Cc1ccccc1)N)O)O" 6VA SMILES "OpenEye OEToolkits" 2.0.5 "CC(C)(C(C(Cc1ccccc1)N)O)O" # _pdbx_chem_comp_identifier.comp_id 6VA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "(3~{R},4~{S})-4-azanyl-2-methyl-5-phenyl-pentane-2,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6VA "Create component" 2016-07-04 EBI 6VA "Initial release" 2016-08-17 RCSB 6VA "Modify backbone" 2023-11-03 PDBE 6VA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 6VA _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #