data_6VN
#
_chem_comp.id 6VN
_chem_comp.name "2-[(4-propan-2-ylphenyl)amino]-1-[(1~{S},5~{S})-3,3,5-trimethylcyclohexyl]benzimidazole-5-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H33 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-07-07
_chem_comp.pdbx_modified_date 2017-02-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 419.559
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6VN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LGE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6VN C1 C1 C 0 1 Y N N -28.057 -102.446 25.243 -2.149 0.532 -0.045 C1 6VN 1
6VN C2 C2 C 0 1 Y N N -28.928 -102.803 27.464 -2.034 2.947 0.060 C2 6VN 2
6VN C3 C3 C 0 1 Y N N -26.768 -102.667 25.727 -3.536 0.597 -0.094 C3 6VN 3
6VN C4 C4 C 0 1 Y N N -27.636 -103.026 27.944 -3.425 2.993 0.009 C4 6VN 4
6VN C8 C5 C 0 1 Y N N -31.684 -98.149 21.487 4.840 1.320 -0.088 C8 6VN 5
6VN C9 C6 C 0 1 Y N N -32.059 -99.354 20.891 4.743 0.100 0.555 C9 6VN 6
6VN C10 C7 C 0 1 Y N N -30.973 -98.185 22.687 3.727 1.879 -0.690 C10 6VN 7
6VN C11 C8 C 0 1 Y N N -31.732 -100.566 21.482 3.533 -0.565 0.598 C11 6VN 8
6VN C12 C9 C 0 1 Y N N -30.637 -99.404 23.279 2.515 1.219 -0.651 C12 6VN 9
6VN C13 C10 C 0 1 Y N N -31.017 -100.597 22.675 2.414 -0.007 -0.006 C13 6VN 10
6VN C14 C11 C 0 1 N N N -32.050 -96.803 20.827 6.160 2.046 -0.128 C14 6VN 11
6VN C15 C12 C 0 1 N N N -26.706 -103.020 22.615 -1.015 -2.638 1.135 C15 6VN 12
6VN C16 C13 C 0 1 N N N -26.150 -103.033 21.201 -1.348 -4.130 1.069 C16 6VN 13
6VN C17 C14 C 0 1 N N S -27.830 -101.979 22.769 -1.561 -1.938 -0.112 C17 6VN 14
6VN C18 C15 C 0 1 N N N -25.678 -101.601 20.841 -0.709 -4.741 -0.180 C18 6VN 15
6VN C19 C16 C 0 1 N N N -27.223 -100.579 22.587 -0.921 -2.549 -1.361 C19 6VN 16
6VN C20 C17 C 0 1 N N S -26.721 -100.498 21.129 -1.255 -4.041 -1.427 C20 6VN 17
6VN C21 C18 C 0 1 N N N -26.151 -99.118 20.785 -0.615 -4.651 -2.675 C21 6VN 18
6VN C24 C19 C 0 1 N N N -33.330 -96.256 21.457 6.626 2.336 1.301 C24 6VN 19
6VN C25 C20 C 0 1 N N N -30.900 -95.786 20.917 7.200 1.176 -0.836 C25 6VN 20
6VN C23 C21 C 0 1 N N N -24.952 -103.975 21.178 -0.803 -4.830 2.315 C23 6VN 21
6VN C22 C22 C 0 1 N N N -27.227 -103.557 20.245 -2.866 -4.311 1.005 C22 6VN 22
6VN N1 N1 N 0 1 Y N N -28.565 -102.151 24.047 -1.242 -0.510 -0.049 N1 6VN 23
6VN C5 C23 C 0 1 Y N N -26.551 -102.970 27.065 -4.167 1.808 -0.067 C5 6VN 24
6VN C7 C24 C 0 1 N N N -27.430 -103.336 29.436 -4.120 4.295 0.036 C7 6VN 25
6VN O1 O1 O 0 1 N N N -28.433 -103.289 30.185 -5.465 4.342 -0.013 O1 6VN 26
6VN O O2 O 0 1 N N N -26.273 -103.606 29.834 -3.478 5.324 0.103 O 6VN 27
6VN C C25 C 0 1 Y N N -29.139 -102.515 26.119 -1.388 1.713 0.033 C 6VN 28
6VN N N2 N 0 1 Y N N -30.246 -102.265 25.428 -0.079 1.344 0.066 N 6VN 29
6VN C6 C26 C 0 1 Y N N -29.882 -102.029 24.174 0.008 0.038 0.018 C6 6VN 30
6VN N2 N3 N 0 1 N N N -30.737 -101.783 23.181 1.188 -0.678 0.036 N2 6VN 31
6VN H1 H1 H 0 1 N N N -29.768 -102.854 28.140 -1.461 3.860 0.119 H1 6VN 32
6VN H2 H2 H 0 1 N N N -25.927 -102.602 25.052 -4.116 -0.312 -0.154 H2 6VN 33
6VN H3 H3 H 0 1 N N N -32.609 -99.343 19.961 5.614 -0.333 1.025 H3 6VN 34
6VN H4 H4 H 0 1 N N N -30.680 -97.261 23.163 3.807 2.832 -1.192 H4 6VN 35
6VN H5 H5 H 0 1 N N N -32.034 -101.491 21.013 3.458 -1.518 1.100 H5 6VN 36
6VN H6 H6 H 0 1 N N N -30.082 -99.420 24.206 1.646 1.655 -1.122 H6 6VN 37
6VN H7 H7 H 0 1 N N N -32.250 -96.994 19.762 6.042 2.985 -0.669 H7 6VN 38
6VN H8 H8 H 0 1 N N N -27.107 -104.017 22.851 -1.470 -2.203 2.024 H8 6VN 39
6VN H9 H9 H 0 1 N N N -25.894 -102.776 23.316 0.066 -2.509 1.180 H9 6VN 40
6VN H10 H10 H 0 1 N N N -28.540 -102.139 21.944 -2.642 -2.067 -0.157 H10 6VN 41
6VN H11 H11 H 0 1 N N N -25.438 -101.577 19.768 0.372 -4.612 -0.135 H11 6VN 42
6VN H12 H12 H 0 1 N N N -24.772 -101.380 21.424 -0.947 -5.804 -0.227 H12 6VN 43
6VN H13 H13 H 0 1 N N N -26.385 -100.436 23.285 -1.310 -2.050 -2.248 H13 6VN 44
6VN H14 H14 H 0 1 N N N -27.987 -99.808 22.768 0.160 -2.420 -1.315 H14 6VN 45
6VN H15 H15 H 0 1 N N N -27.584 -100.677 20.470 -2.336 -4.170 -1.472 H15 6VN 46
6VN H16 H16 H 0 1 N N N -26.906 -98.346 20.996 -0.853 -5.714 -2.722 H16 6VN 47
6VN H17 H17 H 0 1 N N N -25.254 -98.930 21.394 -1.004 -4.153 -3.563 H17 6VN 48
6VN H18 H18 H 0 1 N N N -25.883 -99.087 19.718 0.466 -4.522 -2.630 H18 6VN 49
6VN H19 H19 H 0 1 N N N -34.130 -97.007 21.375 5.885 2.956 1.806 H19 6VN 50
6VN H20 H20 H 0 1 N N N -33.148 -96.028 22.518 6.743 1.397 1.842 H20 6VN 51
6VN H21 H21 H 0 1 N N N -33.634 -95.339 20.932 7.580 2.861 1.272 H21 6VN 52
6VN H22 H22 H 0 1 N N N -29.997 -96.211 20.455 7.318 0.237 -0.296 H22 6VN 53
6VN H23 H23 H 0 1 N N N -31.183 -94.865 20.387 6.868 0.970 -1.854 H23 6VN 54
6VN H24 H24 H 0 1 N N N -30.697 -95.554 21.973 8.155 1.701 -0.865 H24 6VN 55
6VN H25 H25 H 0 1 N N N -24.177 -103.601 21.864 -1.258 -4.395 3.204 H25 6VN 56
6VN H26 H26 H 0 1 N N N -25.269 -104.979 21.496 -1.040 -5.893 2.268 H26 6VN 57
6VN H27 H27 H 0 1 N N N -24.545 -104.025 20.157 0.278 -4.701 2.360 H27 6VN 58
6VN H28 H28 H 0 1 N N N -27.523 -104.573 20.547 -3.255 -3.813 0.117 H28 6VN 59
6VN H29 H29 H 0 1 N N N -28.104 -102.894 20.281 -3.104 -5.374 0.958 H29 6VN 60
6VN H30 H30 H 0 1 N N N -26.827 -103.581 19.220 -3.322 -3.876 1.895 H30 6VN 61
6VN H31 H31 H 0 1 N N N -25.550 -103.161 27.424 -5.246 1.851 -0.106 H31 6VN 62
6VN H32 H32 H 0 1 N N N -28.172 -103.487 31.077 -5.875 5.218 0.008 H32 6VN 63
6VN H33 H33 H 0 1 N N N -31.209 -102.569 22.783 1.166 -1.647 0.077 H33 6VN 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6VN C22 C16 SING N N 1
6VN C21 C20 SING N N 2
6VN C14 C25 SING N N 3
6VN C14 C24 SING N N 4
6VN C14 C8 SING N N 5
6VN C18 C20 SING N N 6
6VN C18 C16 SING N N 7
6VN C9 C11 DOUB Y N 8
6VN C9 C8 SING Y N 9
6VN C20 C19 SING N N 10
6VN C23 C16 SING N N 11
6VN C16 C15 SING N N 12
6VN C11 C13 SING Y N 13
6VN C8 C10 DOUB Y N 14
6VN C19 C17 SING N N 15
6VN C15 C17 SING N N 16
6VN C13 N2 SING N N 17
6VN C13 C12 DOUB Y N 18
6VN C10 C12 SING Y N 19
6VN C17 N1 SING N N 20
6VN N2 C6 SING N N 21
6VN N1 C6 SING Y N 22
6VN N1 C1 SING Y N 23
6VN C6 N DOUB Y N 24
6VN C1 C3 DOUB Y N 25
6VN C1 C SING Y N 26
6VN N C SING Y N 27
6VN C3 C5 SING Y N 28
6VN C C2 DOUB Y N 29
6VN C5 C4 DOUB Y N 30
6VN C2 C4 SING Y N 31
6VN C4 C7 SING N N 32
6VN C7 O DOUB N N 33
6VN C7 O1 SING N N 34
6VN C2 H1 SING N N 35
6VN C3 H2 SING N N 36
6VN C9 H3 SING N N 37
6VN C10 H4 SING N N 38
6VN C11 H5 SING N N 39
6VN C12 H6 SING N N 40
6VN C14 H7 SING N N 41
6VN C15 H8 SING N N 42
6VN C15 H9 SING N N 43
6VN C17 H10 SING N N 44
6VN C18 H11 SING N N 45
6VN C18 H12 SING N N 46
6VN C19 H13 SING N N 47
6VN C19 H14 SING N N 48
6VN C20 H15 SING N N 49
6VN C21 H16 SING N N 50
6VN C21 H17 SING N N 51
6VN C21 H18 SING N N 52
6VN C24 H19 SING N N 53
6VN C24 H20 SING N N 54
6VN C24 H21 SING N N 55
6VN C25 H22 SING N N 56
6VN C25 H23 SING N N 57
6VN C25 H24 SING N N 58
6VN C23 H25 SING N N 59
6VN C23 H26 SING N N 60
6VN C23 H27 SING N N 61
6VN C22 H28 SING N N 62
6VN C22 H29 SING N N 63
6VN C22 H30 SING N N 64
6VN C5 H31 SING N N 65
6VN O1 H32 SING N N 66
6VN N2 H33 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6VN InChI InChI 1.03 "InChI=1S/C26H33N3O2/c1-16(2)18-6-9-20(10-7-18)27-25-28-22-13-19(24(30)31)8-11-23(22)29(25)21-12-17(3)14-26(4,5)15-21/h6-11,13,16-17,21H,12,14-15H2,1-5H3,(H,27,28)(H,30,31)/t17-,21+/m1/s1"
6VN InChIKey InChI 1.03 GWMNDWCQEWDFPA-UTKZUKDTSA-N
6VN SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1C[C@@H](CC(C)(C)C1)n2c(Nc3ccc(cc3)C(C)C)nc4cc(ccc24)C(O)=O"
6VN SMILES CACTVS 3.385 "C[CH]1C[CH](CC(C)(C)C1)n2c(Nc3ccc(cc3)C(C)C)nc4cc(ccc24)C(O)=O"
6VN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C[C@@H]1C[C@@H](CC(C1)(C)C)n2c3ccc(cc3nc2Nc4ccc(cc4)C(C)C)C(=O)O"
6VN SMILES "OpenEye OEToolkits" 2.0.5 "CC1CC(CC(C1)(C)C)n2c3ccc(cc3nc2Nc4ccc(cc4)C(C)C)C(=O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6VN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "2-[(4-propan-2-ylphenyl)amino]-1-[(1~{S},5~{S})-3,3,5-trimethylcyclohexyl]benzimidazole-5-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6VN "Create component" 2016-07-07 EBI
6VN "Initial release" 2017-02-08 RCSB
#