data_6VU # _chem_comp.id 6VU _chem_comp.name "1-(4-methoxybutyl)-~{N}-(2-methylpropyl)-~{N}-[(3~{S},5~{R})-5-morpholin-4-ylcarbonylpiperidin-3-yl]benzimidazole-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H41 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-06 _chem_comp.pdbx_modified_date 2017-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.646 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6VU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5KOT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6VU C4 C1 C 0 1 N N N -21.237 -34.573 -9.217 -2.219 3.901 0.577 C4 6VU 1 6VU C5 C2 C 0 1 N N N -22.135 -34.576 -10.456 -2.661 2.542 0.031 C5 6VU 2 6VU C6 C3 C 0 1 N N N -23.109 -33.393 -10.373 -3.006 1.612 1.196 C6 6VU 3 6VU C8 C4 C 0 1 Y N N -25.142 -33.707 -11.856 -2.619 -0.765 0.412 C8 6VU 4 6VU C10 C5 C 0 1 Y N N -24.405 -33.034 -13.773 -4.630 -1.391 -0.114 C10 6VU 5 6VU C13 C6 C 0 1 Y N N -21.929 -32.023 -14.582 -7.077 -0.090 -0.018 C13 6VU 6 6VU C15 C7 C 0 1 Y N N -23.348 -32.886 -12.842 -4.713 -0.064 0.353 C15 6VU 7 6VU C20 C8 C 0 1 N N N -25.182 -36.724 -12.696 -1.281 -3.056 -1.602 C20 6VU 8 6VU C21 C9 C 0 1 N N N -24.534 -37.797 -11.822 0.114 -3.144 -2.224 C21 6VU 9 6VU C22 C10 C 0 1 N N N -25.390 -37.228 -14.130 -2.138 -4.219 -2.107 C22 6VU 10 6VU C28 C11 C 0 1 N N R -29.810 -36.631 -9.158 3.171 -0.912 0.281 C28 6VU 11 6VU C1 C12 C 0 1 N N N -20.114 -35.984 -6.683 -1.116 7.048 -1.090 C1 6VU 12 6VU O2 O1 O 0 1 N N N -19.598 -35.963 -8.028 -1.462 6.101 -0.079 O2 6VU 13 6VU C3 C13 C 0 1 N N N -20.585 -35.953 -9.067 -1.875 4.831 -0.589 C3 6VU 14 6VU N7 N1 N 0 1 Y N N -23.844 -33.330 -11.641 -3.428 0.310 0.673 N7 6VU 15 6VU N9 N2 N 0 1 Y N N -25.465 -33.532 -13.114 -3.338 -1.757 -0.050 N9 6VU 16 6VU C11 C14 C 0 1 Y N N -24.197 -32.657 -15.112 -5.798 -2.049 -0.524 C11 6VU 17 6VU C12 C15 C 0 1 Y N N -22.972 -32.171 -15.497 -6.997 -1.400 -0.473 C12 6VU 18 6VU C14 C16 C 0 1 Y N N -22.107 -32.372 -13.251 -5.945 0.577 0.398 C14 6VU 19 6VU C16 C17 C 0 1 N N N -26.017 -34.275 -10.800 -1.154 -0.797 0.615 C16 6VU 20 6VU O17 O2 O 0 1 N N N -26.126 -33.656 -9.759 -0.566 0.210 0.958 O17 6VU 21 6VU N18 N3 N 0 1 N N N -26.635 -35.477 -10.938 -0.472 -1.942 0.419 N18 6VU 22 6VU C19 C18 C 0 1 N N N -26.571 -36.297 -12.185 -1.166 -3.132 -0.078 C19 6VU 23 6VU C23 C19 C 0 1 N N S -27.483 -35.946 -9.823 0.964 -1.997 0.703 C23 6VU 24 6VU C25 C20 C 0 1 N N N -27.030 -37.343 -9.358 1.196 -1.801 2.204 C25 6VU 25 6VU N26 N4 N 0 1 N N N -27.957 -37.907 -8.367 2.636 -1.835 2.486 N26 6VU 26 6VU C27 C21 C 0 1 N N N -29.300 -38.054 -8.930 3.339 -0.747 1.793 C27 6VU 27 6VU C30 C22 C 0 1 N N N -28.964 -35.950 -10.253 1.681 -0.885 -0.068 C30 6VU 28 6VU C31 C23 C 0 1 N N N -31.272 -36.671 -9.560 3.875 0.216 -0.428 C31 6VU 29 6VU O32 O3 O 0 1 N N N -31.534 -36.618 -10.749 3.254 1.200 -0.769 O32 6VU 30 6VU N33 N5 N 0 1 N N N -32.303 -36.753 -8.677 5.196 0.131 -0.685 N33 6VU 31 6VU C34 C24 C 0 1 N N N -32.145 -36.830 -7.202 5.926 1.262 -1.280 C34 6VU 32 6VU C35 C25 C 0 1 N N N -32.884 -38.107 -6.759 7.172 1.534 -0.429 C35 6VU 33 6VU O36 O4 O 0 1 N N N -34.246 -38.021 -7.205 7.906 0.318 -0.267 O36 6VU 34 6VU C37 C26 C 0 1 N N N -34.406 -38.020 -8.632 7.194 -0.708 0.429 C37 6VU 35 6VU C38 C27 C 0 1 N N N -33.699 -36.775 -9.193 5.951 -1.093 -0.373 C38 6VU 36 6VU H1 H1 H 0 1 N N N -20.456 -33.807 -9.330 -3.028 4.337 1.163 H1 6VU 37 6VU H2 H2 H 0 1 N N N -21.841 -34.352 -8.325 -1.341 3.771 1.209 H2 6VU 38 6VU H3 H3 H 0 1 N N N -22.702 -35.518 -10.498 -3.539 2.672 -0.602 H3 6VU 39 6VU H4 H4 H 0 1 N N N -21.516 -34.480 -11.360 -1.852 2.105 -0.555 H4 6VU 40 6VU H5 H5 H 0 1 N N N -22.551 -32.458 -10.217 -2.128 1.481 1.829 H5 6VU 41 6VU H6 H6 H 0 1 N N N -23.811 -33.544 -9.540 -3.814 2.048 1.782 H6 6VU 42 6VU H7 H7 H 0 1 N N N -20.977 -31.634 -14.912 -8.035 0.408 0.016 H7 6VU 43 6VU H8 H8 H 0 1 N N N -24.527 -35.841 -12.721 -1.747 -2.112 -1.884 H8 6VU 44 6VU H9 H9 H 0 1 N N N -24.398 -37.407 -10.802 0.548 -4.120 -2.008 H9 6VU 45 6VU H10 H10 H 0 1 N N N -25.182 -38.685 -11.791 0.040 -3.010 -3.303 H10 6VU 46 6VU H11 H11 H 0 1 N N N -23.556 -38.071 -12.243 0.748 -2.363 -1.804 H11 6VU 47 6VU H12 H12 H 0 1 N N N -24.425 -37.549 -14.550 -3.132 -4.157 -1.664 H12 6VU 48 6VU H13 H13 H 0 1 N N N -26.088 -38.079 -14.122 -2.220 -4.165 -3.193 H13 6VU 49 6VU H14 H14 H 0 1 N N N -25.807 -36.418 -14.746 -1.673 -5.163 -1.825 H14 6VU 50 6VU H15 H15 H 0 1 N N N -29.708 -36.060 -8.224 3.602 -1.863 -0.031 H15 6VU 51 6VU H16 H16 H 0 1 N N N -19.277 -35.990 -5.969 -0.292 6.658 -1.687 H16 6VU 52 6VU H17 H17 H 0 1 N N N -20.734 -35.091 -6.514 -1.978 7.225 -1.734 H17 6VU 53 6VU H18 H18 H 0 1 N N N -20.725 -36.887 -6.539 -0.814 7.985 -0.623 H18 6VU 54 6VU H19 H19 H 0 1 N N N -21.364 -36.691 -8.826 -1.066 4.394 -1.175 H19 6VU 55 6VU H20 H20 H 0 1 N N N -20.104 -36.225 -10.018 -2.753 4.961 -1.221 H20 6VU 56 6VU H21 H21 H 0 1 N N N -24.996 -32.749 -15.833 -5.749 -3.067 -0.880 H21 6VU 57 6VU H22 H22 H 0 1 N N N -22.812 -31.898 -16.530 -7.894 -1.911 -0.790 H22 6VU 58 6VU H23 H23 H 0 1 N N N -21.303 -32.250 -12.540 -6.015 1.595 0.750 H23 6VU 59 6VU H24 H24 H 0 1 N N N -27.050 -35.714 -12.986 -2.163 -3.181 0.360 H24 6VU 60 6VU H25 H25 H 0 1 N N N -27.150 -37.215 -12.004 -0.603 -4.024 0.200 H25 6VU 61 6VU H26 H26 H 0 1 N N N -27.375 -35.252 -8.976 1.359 -2.966 0.398 H26 6VU 62 6VU H27 H27 H 0 1 N N N -26.987 -38.013 -10.229 0.788 -0.838 2.511 H27 6VU 63 6VU H28 H28 H 0 1 N N N -26.030 -37.263 -8.907 0.699 -2.599 2.755 H28 6VU 64 6VU H29 H29 H 0 1 N N N -27.623 -38.805 -8.080 2.811 -1.803 3.480 H29 6VU 65 6VU H31 H31 H 0 1 N N N -29.955 -38.588 -8.226 4.399 -0.780 2.047 H31 6VU 66 6VU H32 H32 H 0 1 N N N -29.259 -38.604 -9.882 2.921 0.211 2.103 H32 6VU 67 6VU H33 H33 H 0 1 N N N -29.309 -34.915 -10.393 1.259 0.081 0.209 H33 6VU 68 6VU H34 H34 H 0 1 N N N -29.071 -36.503 -11.198 1.555 -1.045 -1.139 H34 6VU 69 6VU H35 H35 H 0 1 N N N -31.080 -36.893 -6.935 6.225 1.011 -2.298 H35 6VU 70 6VU H36 H36 H 0 1 N N N -32.591 -35.946 -6.724 5.289 2.146 -1.290 H36 6VU 71 6VU H37 H37 H 0 1 N N N -32.857 -38.190 -5.662 7.798 2.274 -0.927 H37 6VU 72 6VU H38 H38 H 0 1 N N N -32.402 -38.989 -7.206 6.870 1.910 0.549 H38 6VU 73 6VU H39 H39 H 0 1 N N N -35.476 -37.988 -8.887 7.837 -1.581 0.548 H39 6VU 74 6VU H40 H40 H 0 1 N N N -33.955 -38.928 -9.058 6.893 -0.341 1.410 H40 6VU 75 6VU H41 H41 H 0 1 N N N -34.230 -35.868 -8.867 5.329 -1.767 0.216 H41 6VU 76 6VU H42 H42 H 0 1 N N N -33.688 -36.818 -10.292 6.252 -1.584 -1.298 H42 6VU 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6VU C12 C11 DOUB Y N 1 6VU C12 C13 SING Y N 2 6VU C11 C10 SING Y N 3 6VU C13 C14 DOUB Y N 4 6VU C22 C20 SING N N 5 6VU C10 N9 SING Y N 6 6VU C10 C15 DOUB Y N 7 6VU C14 C15 SING Y N 8 6VU N9 C8 DOUB Y N 9 6VU C15 N7 SING Y N 10 6VU C20 C19 SING N N 11 6VU C20 C21 SING N N 12 6VU C19 N18 SING N N 13 6VU C8 N7 SING Y N 14 6VU C8 C16 SING N N 15 6VU N7 C6 SING N N 16 6VU N18 C16 SING N N 17 6VU N18 C23 SING N N 18 6VU C16 O17 DOUB N N 19 6VU O32 C31 DOUB N N 20 6VU C5 C6 SING N N 21 6VU C5 C4 SING N N 22 6VU C30 C23 SING N N 23 6VU C30 C28 SING N N 24 6VU C23 C25 SING N N 25 6VU C31 C28 SING N N 26 6VU C31 N33 SING N N 27 6VU C25 N26 SING N N 28 6VU C4 C3 SING N N 29 6VU C38 N33 SING N N 30 6VU C38 C37 SING N N 31 6VU C28 C27 SING N N 32 6VU C3 O2 SING N N 33 6VU C27 N26 SING N N 34 6VU N33 C34 SING N N 35 6VU C37 O36 SING N N 36 6VU O2 C1 SING N N 37 6VU O36 C35 SING N N 38 6VU C34 C35 SING N N 39 6VU C4 H1 SING N N 40 6VU C4 H2 SING N N 41 6VU C5 H3 SING N N 42 6VU C5 H4 SING N N 43 6VU C6 H5 SING N N 44 6VU C6 H6 SING N N 45 6VU C13 H7 SING N N 46 6VU C20 H8 SING N N 47 6VU C21 H9 SING N N 48 6VU C21 H10 SING N N 49 6VU C21 H11 SING N N 50 6VU C22 H12 SING N N 51 6VU C22 H13 SING N N 52 6VU C22 H14 SING N N 53 6VU C28 H15 SING N N 54 6VU C1 H16 SING N N 55 6VU C1 H17 SING N N 56 6VU C1 H18 SING N N 57 6VU C3 H19 SING N N 58 6VU C3 H20 SING N N 59 6VU C11 H21 SING N N 60 6VU C12 H22 SING N N 61 6VU C14 H23 SING N N 62 6VU C19 H24 SING N N 63 6VU C19 H25 SING N N 64 6VU C23 H26 SING N N 65 6VU C25 H27 SING N N 66 6VU C25 H28 SING N N 67 6VU N26 H29 SING N N 68 6VU C27 H31 SING N N 69 6VU C27 H32 SING N N 70 6VU C30 H33 SING N N 71 6VU C30 H34 SING N N 72 6VU C34 H35 SING N N 73 6VU C34 H36 SING N N 74 6VU C35 H37 SING N N 75 6VU C35 H38 SING N N 76 6VU C37 H39 SING N N 77 6VU C37 H40 SING N N 78 6VU C38 H41 SING N N 79 6VU C38 H42 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6VU InChI InChI 1.03 "InChI=1S/C27H41N5O4/c1-20(2)19-32(22-16-21(17-28-18-22)26(33)30-11-14-36-15-12-30)27(34)25-29-23-8-4-5-9-24(23)31(25)10-6-7-13-35-3/h4-5,8-9,20-22,28H,6-7,10-19H2,1-3H3/t21-,22+/m1/s1" 6VU InChIKey InChI 1.03 RHIBAIKQWJNESW-YADHBBJMSA-N 6VU SMILES_CANONICAL CACTVS 3.385 "COCCCCn1c2ccccc2nc1C(=O)N(CC(C)C)[C@@H]3CNC[C@@H](C3)C(=O)N4CCOCC4" 6VU SMILES CACTVS 3.385 "COCCCCn1c2ccccc2nc1C(=O)N(CC(C)C)[CH]3CNC[CH](C3)C(=O)N4CCOCC4" 6VU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(C)CN([C@H]1C[C@H](CNC1)C(=O)N2CCOCC2)C(=O)c3nc4ccccc4n3CCCCOC" 6VU SMILES "OpenEye OEToolkits" 2.0.5 "CC(C)CN(C1CC(CNC1)C(=O)N2CCOCC2)C(=O)c3nc4ccccc4n3CCCCOC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6VU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "1-(4-methoxybutyl)-~{N}-(2-methylpropyl)-~{N}-[(3~{S},5~{R})-5-morpholin-4-ylcarbonylpiperidin-3-yl]benzimidazole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6VU "Create component" 2016-07-06 RCSB 6VU "Initial release" 2017-07-05 RCSB #