data_6WA # _chem_comp.id 6WA _chem_comp.name "3-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methyl-(3-phosphonopropyl)amino]propylphosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N4 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "9-[N,N-(Bis-3-phosphonopropyl)aminomethyl]-9-deazahypoxanthine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-08 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 408.284 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6WA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5KNU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6WA OAD O1 O 0 1 N N N -3.080 29.400 -42.933 4.754 0.947 1.929 OAD 6WA 1 6WA PAY P1 P 0 1 N N N -3.969 30.621 -43.024 4.864 1.693 0.506 PAY 6WA 2 6WA OAE O2 O 0 1 N N N -4.191 30.990 -44.475 4.347 3.074 0.632 OAE 6WA 3 6WA OAB O3 O 0 1 N N N -3.290 31.774 -42.317 6.405 1.737 0.041 OAB 6WA 4 6WA CAN C1 C 0 1 N N N -5.579 30.268 -42.227 3.881 0.786 -0.733 CAN 6WA 5 6WA CAJ C2 C 0 1 N N N -6.233 28.983 -42.766 2.400 0.852 -0.356 CAJ 6WA 6 6WA CAL C3 C 0 1 N N N -7.409 28.520 -41.873 1.575 0.091 -1.396 CAL 6WA 7 6WA NAX N1 N 0 1 N N N -8.032 27.293 -42.375 0.153 0.154 -1.034 NAX 6WA 8 6WA CAM C4 C 0 1 N N N -8.484 27.558 -43.748 -0.354 1.530 -1.124 CAM 6WA 9 6WA CAK C5 C 0 1 N N N -9.925 27.031 -43.936 -1.685 1.634 -0.377 CAK 6WA 10 6WA CAO C6 C 0 1 N N N -10.773 27.979 -44.800 -2.227 3.059 -0.497 CAO 6WA 11 6WA PAZ P2 P 0 1 N N N -12.285 27.147 -45.407 -3.879 3.148 0.270 PAZ 6WA 12 6WA OAF O4 O 0 1 N N N -11.930 26.280 -46.596 -3.796 2.687 1.674 OAF 6WA 13 6WA OAG O5 O 0 1 N N N -12.865 26.283 -44.306 -4.406 4.668 0.234 OAG 6WA 14 6WA OAC O6 O 0 1 N N N -13.297 28.195 -45.815 -4.900 2.206 -0.544 OAC 6WA 15 6WA CAP C7 C 0 1 N N N -7.093 26.175 -42.436 -0.644 -0.756 -1.868 CAP 6WA 16 6WA CAT C8 C 0 1 Y N N -6.521 25.890 -41.031 -0.433 -2.175 -1.406 CAT 6WA 17 6WA CAV C9 C 0 1 Y N N -7.207 25.274 -39.932 -0.983 -2.761 -0.246 CAV 6WA 18 6WA NAQ N2 N 0 1 N N N -8.462 24.775 -39.742 -1.794 -2.312 0.742 NAQ 6WA 19 6WA CAH C10 C 0 1 N N N -8.810 24.253 -38.572 -2.155 -3.092 1.719 CAH 6WA 20 6WA NAR N3 N 0 1 N N N -7.970 24.192 -37.542 -1.742 -4.383 1.803 NAR 6WA 21 6WA CAU C11 C 0 1 N N N -6.712 24.666 -37.650 -0.931 -4.908 0.859 CAU 6WA 22 6WA OAA O7 O 0 1 N N N -5.821 24.598 -36.555 -0.557 -6.067 0.930 OAA 6WA 23 6WA CAW C12 C 0 1 Y N N -6.276 25.239 -38.883 -0.526 -4.084 -0.212 CAW 6WA 24 6WA NAS N4 N 0 1 Y N N -5.120 25.780 -39.295 0.268 -4.272 -1.318 NAS 6WA 25 6WA CAI C13 C 0 1 Y N N -5.225 26.178 -40.563 0.309 -3.112 -2.031 CAI 6WA 26 6WA H1 H1 H 0 1 N N N -2.843 29.115 -43.808 5.075 0.035 1.921 H1 6WA 27 6WA H2 H2 H 0 1 N N N -3.147 32.484 -42.932 6.988 2.204 0.655 H2 6WA 28 6WA H3 H3 H 0 1 N N N -5.420 30.156 -41.144 4.027 1.239 -1.714 H3 6WA 29 6WA H4 H4 H 0 1 N N N -6.257 31.114 -42.412 4.203 -0.254 -0.762 H4 6WA 30 6WA H5 H5 H 0 1 N N N -6.610 29.174 -43.781 2.254 0.399 0.625 H5 6WA 31 6WA H6 H6 H 0 1 N N N -5.476 28.185 -42.800 2.078 1.893 -0.327 H6 6WA 32 6WA H7 H7 H 0 1 N N N -7.031 28.336 -40.856 1.720 0.544 -2.377 H7 6WA 33 6WA H8 H8 H 0 1 N N N -8.167 29.316 -41.844 1.897 -0.950 -1.425 H8 6WA 34 6WA H10 H10 H 0 1 N N N -7.814 27.050 -44.457 0.368 2.213 -0.677 H10 6WA 35 6WA H11 H11 H 0 1 N N N -8.464 28.642 -43.936 -0.503 1.793 -2.171 H11 6WA 36 6WA H12 H12 H 0 1 N N N -10.399 26.930 -42.948 -2.400 0.935 -0.810 H12 6WA 37 6WA H13 H13 H 0 1 N N N -9.883 26.046 -44.425 -1.531 1.391 0.675 H13 6WA 38 6WA H14 H14 H 0 1 N N N -10.175 28.310 -45.662 -1.553 3.749 0.011 H14 6WA 39 6WA H15 H15 H 0 1 N N N -11.062 28.852 -44.197 -2.300 3.332 -1.550 H15 6WA 40 6WA H16 H16 H 0 1 N N N -12.885 25.377 -44.591 -5.281 4.790 0.627 H16 6WA 41 6WA H17 H17 H 0 1 N N N -13.504 28.095 -46.737 -4.947 2.402 -1.490 H17 6WA 42 6WA H18 H18 H 0 1 N N N -7.615 25.280 -42.805 -1.699 -0.499 -1.781 H18 6WA 43 6WA H19 H19 H 0 1 N N N -6.270 26.428 -43.120 -0.331 -0.663 -2.908 H19 6WA 44 6WA H20 H20 H 0 1 N N N -9.810 23.864 -38.452 -2.803 -2.699 2.489 H20 6WA 45 6WA H21 H21 H 0 1 N N N -8.275 23.790 -36.678 -2.031 -4.933 2.548 H21 6WA 46 6WA H22 H22 H 0 1 N N N -4.298 25.872 -38.732 0.722 -5.096 -1.555 H22 6WA 47 6WA H23 H23 H 0 1 N N N -4.441 26.647 -41.139 0.853 -2.965 -2.952 H23 6WA 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6WA OAF PAZ DOUB N N 1 6WA OAC PAZ SING N N 2 6WA PAZ CAO SING N N 3 6WA PAZ OAG SING N N 4 6WA CAO CAK SING N N 5 6WA OAE PAY DOUB N N 6 6WA CAK CAM SING N N 7 6WA CAM NAX SING N N 8 6WA PAY OAD SING N N 9 6WA PAY OAB SING N N 10 6WA PAY CAN SING N N 11 6WA CAJ CAN SING N N 12 6WA CAJ CAL SING N N 13 6WA CAP NAX SING N N 14 6WA CAP CAT SING N N 15 6WA NAX CAL SING N N 16 6WA CAT CAI DOUB Y N 17 6WA CAT CAV SING Y N 18 6WA CAI NAS SING Y N 19 6WA CAV NAQ SING N N 20 6WA CAV CAW DOUB Y N 21 6WA NAQ CAH DOUB N N 22 6WA NAS CAW SING Y N 23 6WA CAW CAU SING N N 24 6WA CAH NAR SING N N 25 6WA CAU NAR SING N N 26 6WA CAU OAA DOUB N N 27 6WA OAD H1 SING N N 28 6WA OAB H2 SING N N 29 6WA CAN H3 SING N N 30 6WA CAN H4 SING N N 31 6WA CAJ H5 SING N N 32 6WA CAJ H6 SING N N 33 6WA CAL H7 SING N N 34 6WA CAL H8 SING N N 35 6WA CAM H10 SING N N 36 6WA CAM H11 SING N N 37 6WA CAK H12 SING N N 38 6WA CAK H13 SING N N 39 6WA CAO H14 SING N N 40 6WA CAO H15 SING N N 41 6WA OAG H16 SING N N 42 6WA OAC H17 SING N N 43 6WA CAP H18 SING N N 44 6WA CAP H19 SING N N 45 6WA CAH H20 SING N N 46 6WA NAR H21 SING N N 47 6WA NAS H22 SING N N 48 6WA CAI H23 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6WA InChI InChI 1.03 "InChI=1S/C13H22N4O7P2/c18-13-12-11(15-9-16-13)10(7-14-12)8-17(3-1-5-25(19,20)21)4-2-6-26(22,23)24/h7,9,14H,1-6,8H2,(H,15,16,18)(H2,19,20,21)(H2,22,23,24)" 6WA InChIKey InChI 1.03 UJUSHVYEYJBIDB-UHFFFAOYSA-N 6WA SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)CCCN(CCC[P](O)(O)=O)Cc1c[nH]c2C(=O)NC=Nc12" 6WA SMILES CACTVS 3.385 "O[P](O)(=O)CCCN(CCC[P](O)(O)=O)Cc1c[nH]c2C(=O)NC=Nc12" 6WA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1c(c2c([nH]1)C(=O)NC=N2)CN(CCCP(=O)(O)O)CCCP(=O)(O)O" 6WA SMILES "OpenEye OEToolkits" 2.0.5 "c1c(c2c([nH]1)C(=O)NC=N2)CN(CCCP(=O)(O)O)CCCP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id 6WA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "3-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methyl-(3-phosphonopropyl)amino]propylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6WA "Create component" 2016-07-08 RCSB 6WA "Modify synonyms" 2016-07-18 RCSB 6WA "Initial release" 2017-07-19 RCSB 6WA "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6WA _pdbx_chem_comp_synonyms.name "9-[N,N-(Bis-3-phosphonopropyl)aminomethyl]-9-deazahypoxanthine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##