data_6WN # _chem_comp.id 6WN _chem_comp.name ;(8~{R},9~{S},13~{S},14~{S},16~{E})-13-methyl-3-oxidanyl-16-(phenylmethylidene)-6,7,8,9,11,12,14,15-octahydrocyclopenta[ a]phenanthren-17-one ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "16-benzylidene estrone" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-11 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6WN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5KRH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6WN O01 O1 O 0 1 N N N -22.302 -27.831 -7.657 -2.295 -3.421 0.065 O01 6WN 1 6WN C01 C1 C 0 1 N N N -21.129 -27.471 -7.578 -1.870 -2.284 0.089 C01 6WN 2 6WN C02 C2 C 0 1 N N S -20.572 -26.626 -6.608 -0.438 -1.875 0.222 C02 6WN 3 6WN C03 C3 C 0 1 N N N -20.488 -25.153 -7.066 -0.120 -1.630 1.699 C03 6WN 4 6WN C04 C4 C 0 1 N N N -21.362 -26.831 -5.317 0.626 -2.778 -0.357 C04 6WN 5 6WN C05 C5 C 0 1 N N N -20.738 -25.947 -4.302 1.992 -2.129 -0.064 C05 6WN 6 6WN C06 C6 C 0 1 N N S -19.223 -26.508 -4.226 2.053 -0.717 -0.628 C06 6WN 7 6WN C07 C7 C 0 1 Y N N -18.494 -25.959 -3.168 3.368 -0.054 -0.333 C07 6WN 8 6WN C08 C8 C 0 1 Y N N -19.119 -25.676 -1.959 4.508 -0.845 -0.292 C08 6WN 9 6WN C09 C9 C 0 1 Y N N -18.396 -25.162 -0.891 5.741 -0.286 -0.034 C09 6WN 10 6WN C10 C10 C 0 1 Y N N -17.032 -24.948 -1.017 5.844 1.081 0.185 C10 6WN 11 6WN O02 O2 O 0 1 N N N -16.321 -24.441 0.029 7.056 1.643 0.434 O02 6WN 12 6WN C11 C11 C 0 1 Y N N -16.394 -25.249 -2.217 4.706 1.868 0.148 C11 6WN 13 6WN C12 C12 C 0 1 Y N N -17.114 -25.791 -3.273 3.463 1.303 -0.106 C12 6WN 14 6WN C13 C13 C 0 1 N N N -16.466 -26.037 -4.474 2.267 2.218 -0.101 C13 6WN 15 6WN C14 C14 C 0 1 N N N -17.207 -27.026 -5.348 1.049 1.542 -0.729 C14 6WN 16 6WN C15 C15 C 0 1 N N R -18.553 -26.414 -5.601 0.899 0.153 -0.110 C15 6WN 17 6WN C16 C16 C 0 1 N N S -19.437 -27.302 -6.501 -0.387 -0.520 -0.542 C16 6WN 18 6WN C17 C17 C 0 1 N N N -18.887 -27.264 -7.868 -1.689 0.106 -0.024 C17 6WN 19 6WN C18 C18 C 0 1 N N N -20.071 -27.913 -8.350 -2.642 -1.089 -0.011 C18 6WN 20 6WN C19 C19 C 0 1 N N N -20.174 -28.814 -9.321 -3.993 -1.024 -0.075 C19 6WN 21 6WN C20 C20 C 0 1 Y N N -19.109 -29.142 -10.166 -4.670 0.280 -0.009 C20 6WN 22 6WN C21 C21 C 0 1 Y N N -18.039 -28.265 -10.366 -5.973 0.421 -0.500 C21 6WN 23 6WN C22 C22 C 0 1 Y N N -17.038 -28.566 -11.276 -6.601 1.646 -0.434 C22 6WN 24 6WN C23 C23 C 0 1 Y N N -17.117 -29.704 -12.047 -5.946 2.735 0.116 C23 6WN 25 6WN C24 C24 C 0 1 Y N N -18.208 -30.551 -11.905 -4.657 2.604 0.603 C24 6WN 26 6WN C25 C25 C 0 1 Y N N -19.230 -30.237 -11.017 -4.017 1.384 0.550 C25 6WN 27 6WN H1 H1 H 0 1 N N N -20.044 -24.544 -6.265 -0.226 -2.562 2.253 H1 6WN 28 6WN H2 H2 H 0 1 N N N -19.862 -25.085 -7.968 0.902 -1.264 1.794 H2 6WN 29 6WN H3 H3 H 0 1 N N N -21.498 -24.781 -7.292 -0.811 -0.888 2.100 H3 6WN 30 6WN H4 H4 H 0 1 N N N -22.416 -26.554 -5.467 0.574 -3.761 0.112 H4 6WN 31 6WN H5 H5 H 0 1 N N N -21.301 -27.881 -4.996 0.485 -2.873 -1.434 H5 6WN 32 6WN H6 H6 H 0 1 N N N -20.756 -24.896 -4.626 2.147 -2.091 1.015 H6 6WN 33 6WN H7 H7 H 0 1 N N N -21.245 -26.040 -3.330 2.780 -2.730 -0.517 H7 6WN 34 6WN H8 H8 H 0 1 N N N -19.332 -27.583 -4.022 1.947 -0.784 -1.710 H8 6WN 35 6WN H9 H9 H 0 1 N N N -20.178 -25.858 -1.849 4.428 -1.909 -0.464 H9 6WN 36 6WN H10 H10 H 0 1 N N N -18.896 -24.929 0.038 6.624 -0.908 -0.002 H10 6WN 37 6WN H11 H11 H 0 1 N N N -16.902 -24.293 0.766 7.524 1.936 -0.359 H11 6WN 38 6WN H12 H12 H 0 1 N N N -15.336 -25.060 -2.327 4.786 2.931 0.318 H12 6WN 39 6WN H13 H13 H 0 1 N N N -15.466 -26.440 -4.258 2.032 2.493 0.927 H13 6WN 40 6WN H14 H14 H 0 1 N N N -16.369 -25.088 -5.022 2.505 3.119 -0.666 H14 6WN 41 6WN H15 H15 H 0 1 N N N -17.315 -27.990 -4.830 0.155 2.133 -0.526 H15 6WN 42 6WN H16 H16 H 0 1 N N N -16.670 -27.178 -6.296 1.193 1.452 -1.806 H16 6WN 43 6WN H17 H17 H 0 1 N N N -18.491 -25.379 -5.968 0.945 0.223 0.976 H17 6WN 44 6WN H18 H18 H 0 1 N N N -19.527 -28.324 -6.104 -0.410 -0.669 -1.622 H18 6WN 45 6WN H19 H19 H 0 1 N N N -17.966 -27.851 -8.000 -1.553 0.510 0.979 H19 6WN 46 6WN H20 H20 H 0 1 N N N -18.736 -26.249 -8.265 -2.045 0.879 -0.706 H20 6WN 47 6WN H21 H21 H 0 1 N N N -21.120 -29.314 -9.464 -4.573 -1.929 -0.175 H21 6WN 48 6WN H22 H22 H 0 1 N N N -17.992 -27.343 -9.805 -6.485 -0.427 -0.929 H22 6WN 49 6WN H23 H23 H 0 1 N N N -16.191 -27.904 -11.381 -7.606 1.757 -0.813 H23 6WN 50 6WN H24 H24 H 0 1 N N N -16.337 -29.936 -12.757 -6.442 3.694 0.160 H24 6WN 51 6WN H25 H25 H 0 1 N N N -18.263 -31.459 -12.488 -4.154 3.458 1.030 H25 6WN 52 6WN H26 H26 H 0 1 N N N -20.122 -30.845 -10.987 -3.012 1.283 0.931 H26 6WN 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6WN C23 C24 DOUB Y N 1 6WN C23 C22 SING Y N 2 6WN C24 C25 SING Y N 3 6WN C22 C21 DOUB Y N 4 6WN C25 C20 DOUB Y N 5 6WN C21 C20 SING Y N 6 6WN C20 C19 SING N N 7 6WN C19 C18 DOUB N E 8 6WN C18 C17 SING N N 9 6WN C18 C01 SING N N 10 6WN C17 C16 SING N N 11 6WN O01 C01 DOUB N N 12 6WN C01 C02 SING N N 13 6WN C03 C02 SING N N 14 6WN C02 C16 SING N N 15 6WN C02 C04 SING N N 16 6WN C16 C15 SING N N 17 6WN C15 C14 SING N N 18 6WN C15 C06 SING N N 19 6WN C14 C13 SING N N 20 6WN C04 C05 SING N N 21 6WN C13 C12 SING N N 22 6WN C05 C06 SING N N 23 6WN C06 C07 SING N N 24 6WN C12 C07 DOUB Y N 25 6WN C12 C11 SING Y N 26 6WN C07 C08 SING Y N 27 6WN C11 C10 DOUB Y N 28 6WN C08 C09 DOUB Y N 29 6WN C10 C09 SING Y N 30 6WN C10 O02 SING N N 31 6WN C03 H1 SING N N 32 6WN C03 H2 SING N N 33 6WN C03 H3 SING N N 34 6WN C04 H4 SING N N 35 6WN C04 H5 SING N N 36 6WN C05 H6 SING N N 37 6WN C05 H7 SING N N 38 6WN C06 H8 SING N N 39 6WN C08 H9 SING N N 40 6WN C09 H10 SING N N 41 6WN O02 H11 SING N N 42 6WN C11 H12 SING N N 43 6WN C13 H13 SING N N 44 6WN C13 H14 SING N N 45 6WN C14 H15 SING N N 46 6WN C14 H16 SING N N 47 6WN C15 H17 SING N N 48 6WN C16 H18 SING N N 49 6WN C17 H19 SING N N 50 6WN C17 H20 SING N N 51 6WN C19 H21 SING N N 52 6WN C21 H22 SING N N 53 6WN C22 H23 SING N N 54 6WN C23 H24 SING N N 55 6WN C24 H25 SING N N 56 6WN C25 H26 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6WN InChI InChI 1.03 "InChI=1S/C25H26O2/c1-25-12-11-21-20-10-8-19(26)14-17(20)7-9-22(21)23(25)15-18(24(25)27)13-16-5-3-2-4-6-16/h2-6,8,10,13-14,21-23,26H,7,9,11-12,15H2,1H3/b18-13+/t21-,22-,23+,25+/m1/s1" 6WN InChIKey InChI 1.03 QXZFHNQLOFFUHO-XCFFBTTBSA-N 6WN SMILES_CANONICAL CACTVS 3.385 "C[C@]12CC[C@H]3[C@@H](CCc4cc(O)ccc34)[C@@H]1CC(=C/c5ccccc5)\C2=O" 6WN SMILES CACTVS 3.385 "C[C]12CC[CH]3[CH](CCc4cc(O)ccc34)[CH]1CC(=Cc5ccccc5)C2=O" 6WN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C/C(=C\c5ccccc5)/C2=O)O" 6WN SMILES "OpenEye OEToolkits" 2.0.5 "CC12CCC3c4ccc(cc4CCC3C1CC(=Cc5ccccc5)C2=O)O" # _pdbx_chem_comp_identifier.comp_id 6WN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "(8~{R},9~{S},13~{S},14~{S},16~{E})-13-methyl-3-oxidanyl-16-(phenylmethylidene)-6,7,8,9,11,12,14,15-octahydrocyclopenta[a]phenanthren-17-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6WN "Create component" 2016-07-11 RCSB 6WN "Initial release" 2017-02-15 RCSB 6WN "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6WN _pdbx_chem_comp_synonyms.name "16-benzylidene estrone" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##