data_6Y9 # _chem_comp.id 6Y9 _chem_comp.name "(2~{R})-1,2-dimethylpyrrolidine-2-carboxylic acid" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H13 N O2" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-22 _chem_comp.pdbx_modified_date 2016-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 143.184 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6Y9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5KX5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6Y9 CD C1 C 0 1 N N N 3.182 38.741 18.121 -1.959 -0.400 0.755 CD 6Y9 1 6Y9 CG C2 C 0 1 N N N 2.591 38.491 16.750 -1.317 -1.764 0.399 CG 6Y9 2 6Y9 CA C3 C 0 1 N N R 2.632 40.881 17.305 0.075 0.032 -0.438 CA 6Y9 3 6Y9 C37 C4 C 0 1 N N N 4.305 40.631 19.221 -1.440 1.866 0.048 C37 6Y9 4 6Y9 CB C5 C 0 1 N N N 2.013 39.856 16.336 -0.418 -1.383 -0.806 CB 6Y9 5 6Y9 C C6 C 0 1 N N N 3.253 42.114 16.484 1.445 -0.046 0.186 C 6Y9 6 6Y9 O O7 O 0 1 N N N 4.448 42.382 16.585 2.174 -0.975 -0.071 O 6Y9 7 6Y9 N N6 N 0 1 N N N 3.687 40.108 18.006 -0.887 0.594 0.531 N 6Y9 8 6Y9 C38 C38 C 0 1 N N N 1.566 41.540 18.192 0.124 0.909 -1.691 C38 6Y9 9 6Y9 HD2 H1 H 0 1 N N N 2.413 38.666 18.904 -2.807 -0.198 0.101 HD2 6Y9 10 6Y9 HD3 H2 H 0 1 N N N 3.996 38.034 18.337 -2.274 -0.390 1.798 HD3 6Y9 11 6Y9 HG2 H3 H 0 1 N N N 1.798 37.730 16.799 -0.719 -2.142 1.228 HG2 6Y9 12 6Y9 HG3 H4 H 0 1 N N N 3.368 38.165 16.043 -2.077 -2.489 0.107 HG3 6Y9 13 6Y9 H5 H5 H 0 1 N N N 5.057 39.917 19.587 -1.953 1.702 -0.900 H5 6Y9 14 6Y9 H6 H6 H 0 1 N N N 4.790 41.594 19.001 -2.145 2.258 0.780 H6 6Y9 15 6Y9 H7 H7 H 0 1 N N N 3.533 40.777 19.991 -0.631 2.582 -0.096 H7 6Y9 16 6Y9 HB2 H8 H 0 1 N N N 2.292 40.092 15.298 0.421 -2.073 -0.895 HB2 6Y9 17 6Y9 HB3 H9 H 0 1 N N N 0.917 39.853 16.430 -0.999 -1.361 -1.728 HB3 6Y9 18 6Y9 H57 H57 H 0 1 N N N 2.046 42.263 18.868 0.461 1.910 -1.421 H57 6Y9 19 6Y9 H58 H58 H 0 1 N N N 0.833 42.061 17.559 0.817 0.474 -2.411 H58 6Y9 20 6Y9 H59 H59 H 0 1 N N N 1.054 40.768 18.785 -0.871 0.967 -2.132 H59 6Y9 21 6Y9 OXT OXT O 0 1 N Y N 2.399 42.780 15.694 1.855 0.916 1.028 OXT 6Y9 22 6Y9 HXT HXT H 0 1 N Y N 2.863 43.474 15.240 2.741 0.822 1.404 HXT 6Y9 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6Y9 CB CG SING N N 1 6Y9 CB CA SING N N 2 6Y9 C O DOUB N N 3 6Y9 C CA SING N N 4 6Y9 CG CD SING N N 5 6Y9 CA N SING N N 6 6Y9 CA C38 SING N N 7 6Y9 N CD SING N N 8 6Y9 N C37 SING N N 9 6Y9 CD HD2 SING N N 10 6Y9 CD HD3 SING N N 11 6Y9 CG HG2 SING N N 12 6Y9 CG HG3 SING N N 13 6Y9 C37 H5 SING N N 14 6Y9 C37 H6 SING N N 15 6Y9 C37 H7 SING N N 16 6Y9 CB HB2 SING N N 17 6Y9 CB HB3 SING N N 18 6Y9 C38 H57 SING N N 19 6Y9 C38 H58 SING N N 20 6Y9 C38 H59 SING N N 21 6Y9 C OXT SING N N 22 6Y9 OXT HXT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6Y9 InChI InChI 1.03 "InChI=1S/C7H13NO2/c1-7(6(9)10)4-3-5-8(7)2/h3-5H2,1-2H3,(H,9,10)/t7-/m1/s1" 6Y9 InChIKey InChI 1.03 BWNGEDLBTNTBMD-SSDOTTSWSA-N 6Y9 SMILES_CANONICAL CACTVS 3.385 "CN1CCC[C@]1(C)C(O)=O" 6Y9 SMILES CACTVS 3.385 "CN1CCC[C]1(C)C(O)=O" 6Y9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C[C@@]1(CCCN1C)C(=O)O" 6Y9 SMILES "OpenEye OEToolkits" 2.0.5 "CC1(CCCN1C)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6Y9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "(2~{R})-1,2-dimethylpyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6Y9 "Create component" 2016-07-22 RCSB 6Y9 "Initial release" 2016-12-28 RCSB #