data_6ZA # _chem_comp.id 6ZA _chem_comp.name "2-amino-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-sulfanylidenetetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-3,9-dihydro-6H-purin-6-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 N5 O6 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-28 _chem_comp.pdbx_modified_date 2019-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6ZA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5L0N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6ZA N12 N1 N 0 1 N N N 10.170 57.453 21.907 -5.524 0.647 0.311 N12 6ZA 1 6ZA C15 C1 C 0 1 N N R 5.841 60.240 18.259 1.744 -0.592 -1.090 C15 6ZA 2 6ZA C17 C2 C 0 1 N N R 6.593 58.037 18.227 -0.458 -0.028 -0.839 C17 6ZA 3 6ZA C20 C3 C 0 1 Y N N 8.150 56.281 17.934 -1.843 -1.960 0.008 C20 6ZA 4 6ZA C21 C4 C 0 1 Y N N 9.329 56.540 19.722 -3.771 -1.014 0.273 C21 6ZA 5 6ZA C22 C5 C 0 1 N N N 10.309 56.475 20.904 -5.160 -0.625 0.537 C22 6ZA 6 6ZA S01 S1 S 0 1 N N N 2.212 62.263 20.490 5.514 1.320 0.105 S01 6ZA 7 6ZA P02 P1 P 0 1 N N R 4.015 61.673 20.365 4.229 0.003 0.398 P02 6ZA 8 6ZA O03 O1 O 0 1 N N N 6.881 59.549 17.920 0.424 -1.034 -1.394 O03 6ZA 9 6ZA O04 O2 O 0 1 N N N 4.035 59.996 20.028 2.770 0.692 0.641 O04 6ZA 10 6ZA O05 O3 O 0 1 N N N 4.729 62.338 18.929 4.091 -0.939 -0.918 O05 6ZA 11 6ZA O06 O4 O 0 1 N N N 4.137 57.722 18.688 0.512 2.022 0.090 O06 6ZA 12 6ZA O07 O5 O 0 1 N N N 4.998 61.924 21.577 4.636 -0.889 1.675 O07 6ZA 13 6ZA O08 O6 O 0 1 N N N 11.162 55.628 21.002 -5.968 -1.440 0.953 O08 6ZA 14 6ZA N09 N2 N 0 1 Y N N 7.654 57.384 18.591 -1.692 -0.656 -0.359 N09 6ZA 15 6ZA N10 N3 N 0 1 N N N 8.238 58.529 20.744 -3.366 1.230 -0.398 N10 6ZA 16 6ZA N11 N4 N 0 1 Y N N 9.194 55.780 18.629 -3.073 -2.169 0.382 N11 6ZA 17 6ZA N13 N5 N 0 1 N N N 9.063 59.439 22.868 -5.093 2.819 -0.349 N13 6ZA 18 6ZA C14 C6 C 0 1 N N S 5.283 59.431 19.647 1.624 -0.127 0.387 C14 6ZA 19 6ZA C16 C7 C 0 1 N N R 5.381 58.161 19.339 0.292 0.633 0.345 C16 6ZA 20 6ZA C18 C8 C 0 1 N N N 6.044 61.710 18.532 2.847 -1.627 -1.194 C18 6ZA 21 6ZA C19 C9 C 0 1 Y N N 8.374 57.521 19.693 -2.897 -0.043 -0.200 C19 6ZA 22 6ZA C23 C10 C 0 1 N N N 9.162 58.459 21.840 -4.664 1.536 -0.137 C23 6ZA 23 6ZA H151 H1 H 0 0 N N N 5.040 60.142 17.511 1.992 0.269 -1.710 H151 6ZA 24 6ZA H171 H3 H 0 0 N N N 6.145 57.597 17.324 -0.692 0.719 -1.597 H171 6ZA 25 6ZA H201 H4 H 0 0 N N N 7.765 55.879 17.008 -1.062 -2.706 -0.008 H201 6ZA 26 6ZA H061 H6 H 0 0 N N N 3.418 57.782 19.306 -0.301 2.535 -0.017 H061 6ZA 27 6ZA H071 H7 H 0 0 N N N 5.856 61.576 21.367 5.486 -1.341 1.584 H071 6ZA 28 6ZA H101 H8 H 0 0 N N N 7.532 59.236 20.701 -2.766 1.918 -0.728 H101 6ZA 29 6ZA H131 H9 H 0 0 N N N 9.701 59.422 23.638 -6.016 3.057 -0.169 H131 6ZA 30 6ZA H132 H10 H 0 0 N N N 8.356 60.144 22.820 -4.474 3.489 -0.679 H132 6ZA 31 6ZA H141 H11 H 0 0 N N N 6.016 59.675 20.430 1.587 -0.976 1.070 H141 6ZA 32 6ZA H161 H13 H 0 0 N N N 5.625 57.516 20.196 -0.261 0.496 1.275 H161 6ZA 33 6ZA H181 H14 H 0 0 N N N 6.770 61.834 19.349 2.687 -2.417 -0.461 H181 6ZA 34 6ZA H182 H15 H 0 0 N N N 6.425 62.202 17.625 2.869 -2.047 -2.200 H182 6ZA 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6ZA N12 C22 SING N N 1 6ZA N12 C23 DOUB N N 2 6ZA C15 O03 SING N N 3 6ZA C15 C18 SING N N 4 6ZA C17 O03 SING N N 5 6ZA C17 N09 SING N N 6 6ZA C17 C16 SING N N 7 6ZA C20 N09 SING Y N 8 6ZA C20 N11 DOUB Y N 9 6ZA C21 C22 SING N N 10 6ZA C21 N11 SING Y N 11 6ZA C21 C19 DOUB Y N 12 6ZA C22 O08 DOUB N N 13 6ZA S01 P02 DOUB N N 14 6ZA P02 O04 SING N N 15 6ZA P02 O05 SING N N 16 6ZA P02 O07 SING N N 17 6ZA O04 C14 SING N N 18 6ZA O05 C18 SING N N 19 6ZA O06 C16 SING N N 20 6ZA N09 C19 SING Y N 21 6ZA N10 C19 SING N N 22 6ZA N10 C23 SING N N 23 6ZA N13 C23 SING N N 24 6ZA C14 C16 SING N N 25 6ZA C15 H151 SING N N 26 6ZA C17 H171 SING N N 27 6ZA C20 H201 SING N N 28 6ZA O06 H061 SING N N 29 6ZA O07 H071 SING N N 30 6ZA N10 H101 SING N N 31 6ZA N13 H131 SING N N 32 6ZA N13 H132 SING N N 33 6ZA C14 H141 SING N N 34 6ZA C16 H161 SING N N 35 6ZA C18 H181 SING N N 36 6ZA C18 H182 SING N N 37 6ZA C15 C14 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6ZA SMILES ACDLabs 12.01 "N=4C(c3ncn(C2OC1COP(=S)(OC1C2O)O)c3NC=4N)=O" 6ZA InChI InChI 1.03 "InChI=1S/C10H12N5O6PS/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6-3(20-9)1-19-22(18,23)21-6/h2-3,5-6,9,16H,1H2,(H,18,23)(H3,11,13,14,17)/t3-,5-,6-,9-,22-/m1/s1" 6ZA InChIKey InChI 1.03 JZAJZXRXCHCRMU-KVBUDSETSA-N 6ZA SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@@H]4CO[P@@](O)(=S)O[C@H]4[C@H]3O)c2N1" 6ZA SMILES CACTVS 3.385 "NC1=NC(=O)c2ncn([CH]3O[CH]4CO[P](O)(=S)O[CH]4[CH]3O)c2N1" 6ZA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=S)(O4)O)O)NC(=NC2=O)N" 6ZA SMILES "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1C3C(C4C(O3)COP(=S)(O4)O)O)NC(=NC2=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6ZA "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-sulfanylidenetetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-3,9-dihydro-6H-purin-6-one" 6ZA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "9-[(4~{a}~{R},6~{R},7~{R},7~{a}~{S})-2,7-bis(oxidanyl)-2-sulfanylidene-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-2-azanyl-3~{H}-purin-6-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6ZA "Create component" 2016-07-28 RCSB 6ZA "Modify formula" 2016-07-28 RCSB 6ZA "Modify formula" 2016-07-29 RCSB 6ZA "Initial release" 2017-08-02 RCSB 6ZA "Other modification" 2019-12-11 RCSB ##