data_71V # _chem_comp.id 71V _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-sulfanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 6-Thio-GMP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-08-13 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 379.286 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 71V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LPG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 71V N1 N1 N 0 1 Y N N -5.682 -10.969 17.136 -5.275 0.177 0.348 N1 71V 1 71V N2 N2 N 0 1 N N N -4.399 -12.016 18.743 -5.459 -2.043 1.052 N2 71V 2 71V C8 C1 C 0 1 Y N N -6.418 -13.614 13.713 -1.024 1.352 -0.320 C8 71V 3 71V O3A O1 O 0 1 N N N -0.836 -16.211 18.589 4.929 2.126 -0.968 O3A 71V 4 71V PA P1 P 0 1 N N N -1.788 -17.504 18.439 5.271 1.044 0.174 PA 71V 5 71V O1A O2 O 0 1 N N N -1.189 -18.328 17.352 6.328 0.131 -0.313 O1A 71V 6 71V O2A O3 O 0 1 N N N -2.060 -18.097 19.780 5.785 1.804 1.496 O2A 71V 7 71V "O5'" O4 O 0 1 N N N -3.192 -16.845 17.861 3.947 0.196 0.523 "O5'" 71V 8 71V "C5'" C2 C 0 1 N N N -4.181 -17.724 17.353 3.309 -0.672 -0.416 "C5'" 71V 9 71V "C4'" C3 C 0 1 N N R -4.483 -17.377 15.890 2.086 -1.318 0.237 "C4'" 71V 10 71V "O4'" O5 O 0 1 N N N -5.376 -16.253 15.927 1.093 -0.317 0.513 "O4'" 71V 11 71V "C3'" C4 C 0 1 N N S -3.211 -16.969 15.085 1.452 -2.337 -0.730 "C3'" 71V 12 71V "O3'" O6 O 0 1 N N N -2.975 -17.869 13.975 1.458 -3.645 -0.154 "O3'" 71V 13 71V "C2'" C5 C 0 1 N N R -3.556 -15.578 14.629 0.002 -1.831 -0.918 "C2'" 71V 14 71V "O2'" O7 O 0 1 N N N -3.047 -15.368 13.294 -0.922 -2.921 -0.922 "O2'" 71V 15 71V "C1'" C6 C 0 1 N N R -5.113 -15.563 14.708 -0.197 -0.942 0.336 "C1'" 71V 16 71V N9 N3 N 0 1 Y N N -5.695 -14.147 14.702 -1.230 0.068 0.094 N9 71V 17 71V N7 N4 N 0 1 Y N N -6.755 -12.368 14.026 -2.163 1.970 -0.431 N7 71V 18 71V C5 C7 C 0 1 Y N N -6.243 -12.104 15.218 -3.170 1.126 -0.097 C5 71V 19 71V C4 C8 C 0 1 Y N N -5.582 -13.205 15.645 -2.583 -0.103 0.244 C4 71V 20 71V N3 N5 N 0 1 Y N N -4.962 -13.202 16.845 -3.365 -1.114 0.614 N3 71V 21 71V C2 C9 C 0 1 Y N N -5.013 -12.062 17.576 -4.679 -0.966 0.662 C2 71V 22 71V C6 C10 C 0 1 Y N N -6.288 -10.984 15.954 -4.571 1.237 -0.032 C6 71V 23 71V S S1 S 0 1 N N N -7.138 -9.568 15.377 -5.374 2.750 -0.446 S 71V 24 71V H1 H1 H 0 1 N N N -3.957 -12.895 18.923 -6.424 -1.953 1.092 H1 71V 25 71V H2 H2 H 0 1 N N N -3.708 -11.293 18.728 -5.040 -2.886 1.284 H2 71V 26 71V H3 H3 H 0 1 N N N -6.688 -14.120 12.798 -0.058 1.789 -0.524 H3 71V 27 71V H4 H4 H 0 1 N N N -0.124 -16.267 17.963 4.242 2.760 -0.718 H4 71V 28 71V H5 H5 H 0 1 N N N -1.796 -19.010 19.783 6.581 2.336 1.360 H5 71V 29 71V H6 H6 H 0 1 N N N -5.100 -17.623 17.949 2.994 -0.096 -1.287 H6 71V 30 71V H7 H7 H 0 1 N N N -3.815 -18.760 17.415 4.008 -1.448 -0.727 H7 71V 31 71V H8 H8 H 0 1 N N N -4.959 -18.239 15.400 2.379 -1.815 1.162 H8 71V 32 71V H9 H9 H 0 1 N N N -2.344 -16.942 15.761 1.982 -2.339 -1.683 H9 71V 33 71V H10 H10 H 0 1 N N N -2.761 -18.733 14.307 1.071 -4.326 -0.720 H10 71V 34 71V H11 H11 H 0 1 N N N -3.146 -14.836 15.330 -0.090 -1.242 -1.831 H11 71V 35 71V H12 H12 H 0 1 N N N -2.097 -15.388 13.310 -0.837 -3.505 -1.688 H12 71V 36 71V H13 H13 H 0 1 N N N -5.517 -16.123 13.851 -0.450 -1.552 1.203 H13 71V 37 71V H14 H14 H 0 1 N N N -6.959 -8.729 16.354 -5.579 2.548 -1.827 H14 71V 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 71V "O2'" "C2'" SING N N 1 71V C8 N7 DOUB Y N 2 71V C8 N9 SING Y N 3 71V "O3'" "C3'" SING N N 4 71V N7 C5 SING Y N 5 71V "C2'" "C1'" SING N N 6 71V "C2'" "C3'" SING N N 7 71V N9 "C1'" SING N N 8 71V N9 C4 SING Y N 9 71V "C1'" "O4'" SING N N 10 71V "C3'" "C4'" SING N N 11 71V C5 C4 DOUB Y N 12 71V C5 C6 SING Y N 13 71V S C6 SING N N 14 71V C4 N3 SING Y N 15 71V "C4'" "O4'" SING N N 16 71V "C4'" "C5'" SING N N 17 71V C6 N1 DOUB Y N 18 71V N3 C2 DOUB Y N 19 71V N1 C2 SING Y N 20 71V O1A PA DOUB N N 21 71V "C5'" "O5'" SING N N 22 71V C2 N2 SING N N 23 71V "O5'" PA SING N N 24 71V PA O3A SING N N 25 71V PA O2A SING N N 26 71V N2 H1 SING N N 27 71V N2 H2 SING N N 28 71V C8 H3 SING N N 29 71V O3A H4 SING N N 30 71V O2A H5 SING N N 31 71V "C5'" H6 SING N N 32 71V "C5'" H7 SING N N 33 71V "C4'" H8 SING N N 34 71V "C3'" H9 SING N N 35 71V "O3'" H10 SING N N 36 71V "C2'" H11 SING N N 37 71V "O2'" H12 SING N N 38 71V "C1'" H13 SING N N 39 71V S H14 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 71V InChI InChI 1.03 "InChI=1S/C10H14N5O7PS/c11-10-13-7-4(8(24)14-10)12-2-15(7)9-6(17)5(16)3(22-9)1-21-23(18,19)20/h2-3,5-6,9,16-17H,1H2,(H2,18,19,20)(H3,11,13,14,24)/t3-,5-,6-,9-/m1/s1" 71V InChIKey InChI 1.03 BPZXYEUJBFHASJ-UUOKFMHZSA-N 71V SMILES_CANONICAL CACTVS 3.385 "Nc1nc(S)c2ncn([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1" 71V SMILES CACTVS 3.385 "Nc1nc(S)c2ncn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c2n1" 71V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)nc(nc2S)N" 71V SMILES "OpenEye OEToolkits" 2.0.5 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)nc(nc2S)N" # _pdbx_chem_comp_identifier.comp_id 71V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-sulfanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 71V "Create component" 2016-08-13 EBI 71V "Initial release" 2016-08-23 RCSB 71V "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 71V _pdbx_chem_comp_synonyms.name 6-Thio-GMP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##