data_72J # _chem_comp.id 72J _chem_comp.name "7-(N-(10-hydroxydecanoyl)-aminopentenyl)-7-deaza-2'-dATP" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H44 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-08-16 _chem_comp.pdbx_modified_date 2016-12-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 743.574 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 72J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SZT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 72J O1G O1 O 0 1 N N N 15.761 -13.683 -14.518 1.819 8.080 0.673 O1G 72J 1 72J PG P1 P 0 1 N N N 16.954 -13.964 -13.628 1.867 7.087 1.769 PG 72J 2 72J O3G O2 O 0 1 N N N 17.506 -12.719 -12.969 2.775 7.657 2.970 O3G 72J 3 72J O2G O3 O 0 1 N N N 18.020 -14.789 -14.319 0.375 6.810 2.308 O2G 72J 4 72J O3B O4 O 0 1 N N N 16.583 -14.951 -12.433 2.503 5.713 1.221 O3B 72J 5 72J PB P2 P 0 1 N N N 16.815 -16.513 -12.181 2.358 4.883 -0.151 PB 72J 6 72J O1B O5 O 0 1 N N N 15.655 -17.054 -11.437 0.936 4.129 -0.175 O1B 72J 7 72J O2B O6 O 0 1 N N N 17.219 -17.159 -13.448 2.443 5.812 -1.301 O2B 72J 8 72J O3A O7 O 0 1 N N N 18.072 -16.463 -11.194 3.543 3.798 -0.249 O3A 72J 9 72J PA P3 P 0 1 N N N 19.651 -16.580 -11.418 4.208 2.974 -1.462 PA 72J 10 72J O2A O8 O 0 1 N N N 20.328 -15.612 -10.529 5.256 3.917 -2.240 O2A 72J 11 72J O1A O9 O 0 1 N N N 19.932 -16.547 -12.871 3.149 2.535 -2.399 O1A 72J 12 72J "O5'" O10 O 0 1 N N N 19.954 -18.037 -10.844 4.976 1.685 -0.878 "O5'" 72J 13 72J "C5'" C1 C 0 1 N N N 19.557 -19.216 -11.571 5.582 0.696 -1.713 "C5'" 72J 14 72J "C4'" C2 C 0 1 N N R 18.767 -20.108 -10.646 6.222 -0.386 -0.840 "C4'" 72J 15 72J "C3'" C3 C 0 1 N N S 17.415 -19.567 -10.212 6.990 -1.400 -1.716 "C3'" 72J 16 72J "O3'" O11 O 0 1 N N N 16.417 -19.846 -11.194 8.386 -1.094 -1.729 "O3'" 72J 17 72J "C2'" C4 C 0 1 N N N 17.165 -20.359 -8.937 6.739 -2.759 -1.025 "C2'" 72J 18 72J "O4'" O12 O 0 1 N N N 19.489 -20.295 -9.412 5.202 -1.167 -0.178 "O4'" 72J 19 72J "C1'" C5 C 0 1 N N R 18.562 -20.536 -8.355 5.849 -2.405 0.188 "C1'" 72J 20 72J N9 N1 N 0 1 Y N N 18.857 -19.626 -7.257 4.852 -3.454 0.412 N9 72J 21 72J C4 C6 C 0 1 Y N N 18.617 -19.881 -5.928 5.069 -4.597 1.134 C4 72J 22 72J N3 N2 N 0 1 Y N N 18.138 -21.030 -5.433 6.115 -5.091 1.796 N3 72J 23 72J C2 C7 C 0 1 Y N N 17.986 -20.982 -4.109 6.032 -6.248 2.416 C2 72J 24 72J N1 N3 N 0 1 Y N N 18.243 -19.974 -3.276 4.931 -6.977 2.422 N1 72J 25 72J C6 C8 C 0 1 Y N N 18.728 -18.822 -3.786 3.835 -6.567 1.789 C6 72J 26 72J N6 N4 N 0 1 N N N 18.981 -17.821 -2.938 2.683 -7.333 1.797 N6 72J 27 72J C5 C9 C 0 1 Y N N 18.941 -18.730 -5.183 3.876 -5.340 1.114 C5 72J 28 72J C8 C10 C 0 1 Y N N 19.338 -18.343 -7.371 3.571 -3.429 -0.065 C8 72J 29 72J C7 C11 C 0 1 Y N N 19.406 -17.747 -6.137 2.919 -4.556 0.322 C7 72J 30 72J C31 C12 C 0 1 N N N 19.842 -16.390 -5.865 1.520 -4.917 0.015 C31 72J 31 72J C32 C13 C 0 1 N N N 20.241 -15.514 -6.758 0.768 -4.099 -0.710 C32 72J 32 72J C33 C14 C 0 1 N N N 20.685 -14.106 -6.505 -0.660 -4.467 -1.023 C33 72J 33 72J C34 C15 C 0 1 N N N 20.978 -13.720 -5.053 -1.589 -3.341 -0.565 C34 72J 34 72J C35 C16 C 0 1 N N N 21.108 -12.227 -4.882 -3.038 -3.715 -0.883 C35 72J 35 72J N36 N5 N 0 1 N N N 21.301 -11.801 -3.505 -3.928 -2.637 -0.445 N36 72J 36 72J C37 C17 C 0 1 N N N 21.904 -10.653 -3.198 -5.259 -2.747 -0.624 C37 72J 37 72J O38 O13 O 0 1 N N N 22.720 -10.114 -3.943 -5.721 -3.739 -1.148 O38 72J 38 72J C39 C18 C 0 1 N N N 21.470 -9.992 -1.915 -6.175 -1.638 -0.174 C39 72J 39 72J C40 C19 C 0 1 N N N 20.244 -10.638 -1.290 -7.624 -2.013 -0.491 C40 72J 40 72J C41 C20 C 0 1 N N N 19.823 -9.984 0.013 -8.553 -0.887 -0.034 C41 72J 41 72J C42 C21 C 0 1 N N N 19.324 -8.561 -0.134 -10.003 -1.260 -0.352 C42 72J 42 72J C43 C22 C 0 1 N N N 18.893 -7.925 1.167 -10.932 -0.134 0.105 C43 72J 43 72J C44 C23 C 0 1 N N N 18.153 -6.602 1.023 -12.381 -0.508 -0.212 C44 72J 44 72J C45 C24 C 0 1 N N N 17.608 -6.057 2.336 -13.311 0.618 0.245 C45 72J 45 72J C46 C25 C 0 1 N N N 18.651 -5.889 3.435 -14.760 0.243 -0.073 C46 72J 46 72J C47 C26 C 0 1 N N N 18.088 -5.587 4.789 -15.689 1.369 0.385 C47 72J 47 72J O48 O14 O 0 1 N N N 16.783 -5.044 4.716 -17.042 1.020 0.088 O48 72J 48 72J H3 H1 H 0 1 N N N 16.994 -11.965 -13.237 2.450 8.485 3.350 H3 72J 49 72J H4 H2 H 0 1 N N N 17.743 -14.986 -15.206 0.331 6.168 3.029 H4 72J 50 72J H43 H3 H 0 1 N N N 15.297 -17.799 -11.906 0.811 3.503 0.552 H43 72J 51 72J H44 H4 H 0 1 N N N 20.898 -15.053 -11.044 5.979 4.242 -1.687 H44 72J 52 72J H6 H5 H 0 1 N N N 18.934 -18.929 -12.431 4.822 0.245 -2.351 H6 72J 53 72J H5 H6 H 0 1 N N N 20.450 -19.750 -11.927 6.347 1.162 -2.333 H5 72J 54 72J H7 H7 H 0 1 N N N 18.615 -21.081 -11.137 6.891 0.066 -0.107 H7 72J 55 72J H8 H8 H 0 1 N N N 17.483 -18.492 -9.990 6.590 -1.408 -2.730 H8 72J 56 72J H9 H9 H 0 1 N N N 15.581 -19.500 -10.904 8.916 -1.700 -2.264 H9 72J 57 72J H11 H10 H 0 1 N N N 16.518 -19.799 -8.246 6.216 -3.438 -1.697 H11 72J 58 72J H10 H11 H 0 1 N N N 16.705 -21.333 -9.162 7.680 -3.197 -0.693 H10 72J 59 72J H12 H12 H 0 1 N N N 18.662 -21.573 -8.003 6.461 -2.264 1.079 H12 72J 60 72J H13 H13 H 0 1 N N N 17.603 -21.881 -3.650 6.900 -6.617 2.941 H13 72J 61 72J H15 H14 H 0 1 N N N 18.756 -18.107 -2.007 2.667 -8.181 2.269 H15 72J 62 72J H14 H15 H 0 1 N N N 19.950 -17.580 -2.987 1.890 -7.022 1.332 H14 72J 63 72J H16 H16 H 0 1 N N N 19.622 -17.871 -8.300 3.145 -2.636 -0.662 H16 72J 64 72J H1 H17 H 0 1 N N N 19.838 -16.071 -4.833 1.110 -5.847 0.381 H1 72J 65 72J H2 H18 H 0 1 N N N 20.250 -15.844 -7.786 1.178 -3.169 -1.075 H2 72J 66 72J H17 H19 H 0 1 N N N 21.605 -13.939 -7.085 -0.770 -4.615 -2.097 H17 72J 67 72J H18 H20 H 0 1 N N N 19.893 -13.437 -6.873 -0.920 -5.388 -0.501 H18 72J 68 72J H19 H21 H 0 1 N N N 20.156 -14.080 -4.417 -1.479 -3.193 0.509 H19 72J 69 72J H20 H22 H 0 1 N N N 21.919 -14.197 -4.742 -1.329 -2.421 -1.087 H20 72J 70 72J H22 H23 H 0 1 N N N 21.970 -11.886 -5.473 -3.148 -3.863 -1.957 H22 72J 71 72J H21 H24 H 0 1 N N N 20.191 -11.755 -5.264 -3.299 -4.636 -0.361 H21 72J 72 72J H23 H25 H 0 1 N N N 20.971 -12.388 -2.766 -3.559 -1.844 -0.026 H23 72J 73 72J H25 H26 H 0 1 N N N 22.300 -10.049 -1.195 -6.065 -1.490 0.901 H25 72J 74 72J H24 H27 H 0 1 N N N 21.239 -8.937 -2.126 -5.914 -0.718 -0.696 H24 72J 75 72J H27 H28 H 0 1 N N N 19.409 -10.566 -2.003 -7.734 -2.160 -1.566 H27 72J 76 72J H26 H29 H 0 1 N N N 20.469 -11.697 -1.093 -7.885 -2.933 0.031 H26 72J 77 72J H28 H30 H 0 1 N N N 19.017 -10.587 0.456 -8.444 -0.738 1.040 H28 72J 78 72J H29 H31 H 0 1 N N N 20.690 -9.976 0.690 -8.293 0.034 -0.556 H29 72J 79 72J H31 H32 H 0 1 N N N 20.133 -7.953 -0.565 -10.112 -1.408 -1.426 H31 72J 80 72J H30 H33 H 0 1 N N N 18.463 -8.565 -0.819 -10.263 -2.181 0.170 H30 72J 81 72J H32 H34 H 0 1 N N N 18.231 -8.631 1.689 -10.822 0.013 1.180 H32 72J 82 72J H33 H35 H 0 1 N N N 19.793 -7.748 1.775 -10.672 0.786 -0.417 H33 72J 83 72J H35 H36 H 0 1 N N N 18.847 -5.860 0.601 -12.491 -0.656 -1.287 H35 72J 84 72J H34 H37 H 0 1 N N N 17.310 -6.750 0.332 -12.642 -1.429 0.310 H34 72J 85 72J H36 H38 H 0 1 N N N 17.156 -5.074 2.138 -13.201 0.765 1.319 H36 72J 86 72J H37 H39 H 0 1 N N N 16.834 -6.749 2.700 -13.050 1.538 -0.277 H37 72J 87 72J H39 H40 H 0 1 N N N 19.229 -6.822 3.504 -14.870 0.095 -1.147 H39 72J 88 72J H38 H41 H 0 1 N N N 19.320 -5.064 3.150 -15.020 -0.677 0.449 H38 72J 89 72J H40 H42 H 0 1 N N N 18.052 -6.518 5.374 -15.579 1.517 1.459 H40 72J 90 72J H41 H43 H 0 1 N N N 18.745 -4.863 5.293 -15.429 2.290 -0.137 H41 72J 91 72J H42 H44 H 0 1 N N N 16.464 -4.867 5.593 -17.688 1.690 0.351 H42 72J 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 72J O1G PG DOUB N N 1 72J O2G PG SING N N 2 72J PG O3G SING N N 3 72J PG O3B SING N N 4 72J O2B PB DOUB N N 5 72J O1A PA DOUB N N 6 72J O3B PB SING N N 7 72J PB O1B SING N N 8 72J PB O3A SING N N 9 72J "C5'" "O5'" SING N N 10 72J "C5'" "C4'" SING N N 11 72J PA O3A SING N N 12 72J PA "O5'" SING N N 13 72J PA O2A SING N N 14 72J "O3'" "C3'" SING N N 15 72J "C4'" "C3'" SING N N 16 72J "C4'" "O4'" SING N N 17 72J "C3'" "C2'" SING N N 18 72J "O4'" "C1'" SING N N 19 72J "C2'" "C1'" SING N N 20 72J "C1'" N9 SING N N 21 72J C8 N9 SING Y N 22 72J C8 C7 DOUB Y N 23 72J N9 C4 SING Y N 24 72J C32 C33 SING N N 25 72J C32 C31 DOUB N E 26 72J C33 C34 SING N N 27 72J C7 C31 SING N N 28 72J C7 C5 SING Y N 29 72J C4 N3 DOUB Y N 30 72J C4 C5 SING Y N 31 72J N3 C2 SING Y N 32 72J C5 C6 DOUB Y N 33 72J C34 C35 SING N N 34 72J C35 N36 SING N N 35 72J C2 N1 DOUB Y N 36 72J O38 C37 DOUB N N 37 72J C6 N1 SING Y N 38 72J C6 N6 SING N N 39 72J N36 C37 SING N N 40 72J C37 C39 SING N N 41 72J C39 C40 SING N N 42 72J C40 C41 SING N N 43 72J C42 C41 SING N N 44 72J C42 C43 SING N N 45 72J C44 C43 SING N N 46 72J C44 C45 SING N N 47 72J C45 C46 SING N N 48 72J C46 C47 SING N N 49 72J O48 C47 SING N N 50 72J O3G H3 SING N N 51 72J O2G H4 SING N N 52 72J O1B H43 SING N N 53 72J O2A H44 SING N N 54 72J "C5'" H6 SING N N 55 72J "C5'" H5 SING N N 56 72J "C4'" H7 SING N N 57 72J "C3'" H8 SING N N 58 72J "O3'" H9 SING N N 59 72J "C2'" H11 SING N N 60 72J "C2'" H10 SING N N 61 72J "C1'" H12 SING N N 62 72J C2 H13 SING N N 63 72J N6 H15 SING N N 64 72J N6 H14 SING N N 65 72J C8 H16 SING N N 66 72J C31 H1 SING N N 67 72J C32 H2 SING N N 68 72J C33 H17 SING N N 69 72J C33 H18 SING N N 70 72J C34 H19 SING N N 71 72J C34 H20 SING N N 72 72J C35 H22 SING N N 73 72J C35 H21 SING N N 74 72J N36 H23 SING N N 75 72J C39 H25 SING N N 76 72J C39 H24 SING N N 77 72J C40 H27 SING N N 78 72J C40 H26 SING N N 79 72J C41 H28 SING N N 80 72J C41 H29 SING N N 81 72J C42 H31 SING N N 82 72J C42 H30 SING N N 83 72J C43 H32 SING N N 84 72J C43 H33 SING N N 85 72J C44 H35 SING N N 86 72J C44 H34 SING N N 87 72J C45 H36 SING N N 88 72J C45 H37 SING N N 89 72J C46 H39 SING N N 90 72J C46 H38 SING N N 91 72J C47 H40 SING N N 92 72J C47 H41 SING N N 93 72J O48 H42 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 72J InChI InChI 1.03 ;InChI=1S/C26H44N5O14P3/c27-25-24-19(11-7-6-9-13-28-22(34)12-8-4-2-1-3-5-10-14-32)16-31(26(24)30-18-29-25)23-15-20(33)21(43-23)17-42-47(38,39)45-48(40,41)44-46(35,36)37/h7,11,16,18,20-21,23,32-33H,1-6,8-10,12-15,17H2,(H,28,34)(H,38,39)(H,40,41)(H2,27,29,30)(H2,35,36,37)/b11-7+/t20-,21+,23+/m0/s1 ; 72J InChIKey InChI 1.03 KGSINQKQGHRQNT-MNMHHJAXSA-N 72J SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cc(/C=C/CCCNC(=O)CCCCCCCCCO)c12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 72J SMILES CACTVS 3.385 "Nc1ncnc2n(cc(C=CCCCNC(=O)CCCCCCCCCO)c12)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 72J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1c(c2c(ncnc2n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)/C=C/CCCNC(=O)CCCCCCCCCO" 72J SMILES "OpenEye OEToolkits" 2.0.5 "c1c(c2c(ncnc2n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)C=CCCCNC(=O)CCCCCCCCCO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 72J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[[(2~{R},3~{S},5~{R})-5-[4-azanyl-5-[(~{E})-5-(10-oxidanyldecanoylamino)pent-1-enyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 72J "Create component" 2016-08-16 EBI 72J "Initial release" 2016-12-14 RCSB #