data_73N # _chem_comp.id 73N _chem_comp.name "(2~{S})-5-carbamimidamido-2-(carboxyamino)pentanoic acid" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H14 N4 O4" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-08-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 218.210 _chem_comp.one_letter_code R _chem_comp.three_letter_code 73N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LRG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 73N C2 C2 C 0 1 N N N N N N 26.964 -3.721 -0.498 -4.645 0.244 0.012 C2 73N 1 73N C9 C9 C 0 1 N N N N N N 24.654 -1.636 2.821 0.146 -0.994 -0.127 C9 73N 2 73N C12 C12 C 0 1 N N S N N N 23.229 -2.075 3.187 1.530 -0.481 0.278 C12 73N 3 73N C20 C20 C 0 1 N N N N N N 22.841 -3.354 2.429 2.563 -1.538 -0.016 C20 73N 4 73N N N23 N 0 1 N N N Y Y N 23.147 -2.240 4.636 1.842 0.732 -0.482 N23 73N 5 73N N1 N1 N 0 1 N N N N N N 26.359 -4.770 0.025 -5.017 -0.918 -0.620 N1 73N 6 73N N3 N3 N 0 1 N N N N N N 27.237 -3.716 -1.784 -5.551 1.112 0.368 N3 73N 7 73N N4 N4 N 0 1 N N N N N N 27.299 -2.652 0.278 -3.318 0.490 0.275 N4 73N 8 73N C5 C5 C 0 1 N N N N N N 26.240 -1.815 0.864 -2.300 -0.487 -0.120 C5 73N 9 73N C6 C6 C 0 1 N N N N N N 25.420 -2.570 1.903 -0.917 0.026 0.285 C6 73N 10 73N O21 O21 O 0 1 N N N N N N 22.996 -4.437 2.994 2.478 -2.741 0.573 O21 73N 11 73N O22 O22 O 0 1 N N N N N N 22.365 -3.253 1.276 3.467 -1.302 -0.782 O22 73N 12 73N C C25 C 0 1 N N N Y N Y 21.920 -2.464 5.142 2.715 1.631 0.013 C25 73N 13 73N O O26 O 0 1 N N N Y N Y 20.925 -2.626 4.442 3.243 1.436 1.090 O26 73N 14 73N H1 H1 H 0 1 N N N N N N 25.227 -1.537 3.755 0.113 -1.138 -1.207 H1 73N 15 73N H4 H2 H 0 1 N N N N N N 24.588 -0.656 2.326 -0.049 -1.944 0.371 H2 73N 16 73N H3 H3 H 0 1 N N N N N N 22.538 -1.276 2.879 1.535 -0.254 1.344 H3 73N 17 73N H H4 H 0 1 N N N Y Y N 23.957 -2.189 5.220 1.420 0.887 -1.342 H4 73N 18 73N H5 H5 H 0 1 N N N N N N 26.141 -4.787 1.001 -4.343 -1.565 -0.881 H5 73N 19 73N H6 H6 H 0 1 N N N N N N 26.118 -5.549 -0.554 -5.953 -1.092 -0.805 H6 73N 20 73N H7 H7 H 0 1 N N N N N N 27.691 -2.871 -2.067 -5.289 1.932 0.814 H7 73N 21 73N H9 H9 H 0 1 N N N N N N 28.261 -2.437 0.449 -3.056 1.311 0.721 H9 73N 22 73N H10 H10 H 0 1 N N N N N N 26.704 -0.941 1.345 -2.496 -1.436 0.379 H10 73N 23 73N H11 H11 H 0 1 N N N N N N 25.569 -1.478 0.060 -2.333 -0.630 -1.200 H11 73N 24 73N H12 H12 H 0 1 N N N N N N 24.703 -3.221 1.382 -0.884 0.169 1.365 H12 73N 25 73N H13 H13 H 0 1 N N N N N N 26.099 -3.185 2.511 -0.721 0.976 -0.214 H13 73N 26 73N H14 H14 H 0 1 N N N N N N 22.703 -5.137 2.423 3.164 -3.387 0.353 H14 73N 27 73N OXT OXT O 0 1 N Y N Y N Y 21.833 -2.503 6.463 3.002 2.746 -0.685 OXT 73N 28 73N HXT H8 H 0 1 N Y N Y N Y 20.932 -2.666 6.717 3.634 3.361 -0.289 H8 73N 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 73N N3 C2 DOUB N N 1 73N C2 N1 SING N N 2 73N C2 N4 SING N N 3 73N N4 C5 SING N N 4 73N C5 C6 SING N N 5 73N O22 C20 DOUB N N 6 73N C6 C9 SING N N 7 73N C20 O21 SING N N 8 73N C20 C12 SING N N 9 73N C9 C12 SING N N 10 73N C12 N SING N N 11 73N O C DOUB N N 12 73N N C SING N N 13 73N C9 H1 SING N N 14 73N C9 H4 SING N N 15 73N C12 H3 SING N N 16 73N N H SING N N 17 73N N1 H5 SING N N 18 73N N1 H6 SING N N 19 73N N3 H7 SING N N 20 73N N4 H9 SING N N 21 73N C5 H10 SING N N 22 73N C5 H11 SING N N 23 73N C6 H12 SING N N 24 73N C6 H13 SING N N 25 73N O21 H14 SING N N 26 73N C OXT SING N N 27 73N OXT HXT SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 73N InChI InChI 1.03 "InChI=1S/C7H14N4O4/c8-6(9)10-3-1-2-4(5(12)13)11-7(14)15/h4,11H,1-3H2,(H,12,13)(H,14,15)(H4,8,9,10)/t4-/m0/s1" 73N InChIKey InChI 1.03 YSAVLQWBPUIBPN-BYPYZUCNSA-N 73N SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCC[C@H](NC(O)=O)C(O)=O" 73N SMILES CACTVS 3.385 "NC(=N)NCCC[CH](NC(O)=O)C(O)=O" 73N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "[H]/N=C(\N)/NCCC[C@@H](C(=O)O)NC(=O)O" 73N SMILES "OpenEye OEToolkits" 2.0.5 "C(CC(C(=O)O)NC(=O)O)CNC(=N)N" # _pdbx_chem_comp_identifier.comp_id 73N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "(2~{S})-5-carbamimidamido-2-(carboxyamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 73N "Create component" 2016-08-19 EBI 73N "Initial release" 2016-09-21 RCSB 73N "Other modification" 2018-10-29 EBI 73N "Modify backbone" 2023-11-03 PDBE 73N "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 73N _pdbx_chem_comp_pcm.modified_residue_id ARG _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #