data_75I # _chem_comp.id 75I _chem_comp.name "DL-6-deoxy-6-hydroxy-methyl-scyllo-inositol 1,2,4-trisphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H17 O15 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1R,2S,3S,4R,5S,6R)-2-(hydroxymethyl)-3,5-bis(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-12 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.122 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 75I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PPD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 75I C2 C1 C 0 1 N N R N N N 12.243 29.851 86.708 -0.404 -0.631 0.006 C2 75I 1 75I C3 C2 C 0 1 N N S N N N 10.853 29.934 86.107 0.944 -0.773 0.715 C3 75I 2 75I C4 C3 C 0 1 N N R N N N 10.993 29.803 84.604 1.944 0.216 0.111 C4 75I 3 75I C5 C4 C 0 1 N N S N N N 11.762 28.546 84.202 1.422 1.643 0.290 C5 75I 4 75I O21 O1 O 0 1 N N N N N N 14.551 27.385 89.329 -3.408 2.830 0.865 O21 75I 5 75I O06 O2 O 0 1 N N N N N N 13.361 26.081 84.972 0.426 4.125 -0.905 O06 75I 6 75I O12 O3 O 0 1 N N N N N N 13.864 31.529 88.946 -2.940 -3.635 0.685 O12 75I 7 75I O2 O4 O 0 1 N N N N N N 12.108 29.871 88.135 -1.338 -1.554 0.569 O2 75I 8 75I O22 O5 O 0 1 N N N N N N 11.455 32.186 88.520 -1.035 -3.533 -0.968 O22 75I 9 75I C06 C5 C 0 1 N N N N N N 13.939 27.257 84.414 -0.449 3.211 -0.241 C06 75I 10 75I P2 P1 P 0 1 N N N N N N 12.411 31.150 89.086 -2.060 -2.706 -0.292 P2 75I 11 75I O32 O6 O 0 1 N N N N N N 12.054 30.666 90.475 -3.018 -2.031 -1.396 O32 75I 12 75I C1 C6 C 0 1 N N R N N N 12.903 28.539 86.324 -0.926 0.796 0.184 C1 75I 13 75I C6 C7 C 0 1 N N S N N N 13.159 28.502 84.829 0.074 1.785 -0.419 C6 75I 14 75I O1 O7 O 0 1 N N N N N N 14.164 28.409 87.011 -2.186 0.929 -0.478 O1 75I 15 75I O3 O8 O 0 1 N N N N N N 10.231 31.178 86.423 1.432 -2.105 0.548 O3 75I 16 75I O4 O9 O 0 1 N N N N N N 9.676 29.768 84.022 3.204 0.083 0.774 O4 75I 17 75I O5 O10 O 0 1 N N N N N N 11.875 28.526 82.789 2.356 2.566 -0.274 O5 75I 18 75I P1 P2 P 0 1 N N N N N N 14.707 27.115 87.846 -3.542 1.332 0.289 P1 75I 19 75I O11 O11 O 0 1 N N N N N N 13.824 25.992 87.360 -3.773 0.393 1.409 O11 75I 20 75I O31 O12 O 0 1 N N N N N N 16.157 26.959 87.432 -4.781 1.260 -0.736 O31 75I 21 75I P4 P3 P 0 1 N N N N N N 9.208 30.457 82.633 4.560 -0.320 0.006 P4 75I 22 75I O14 O13 O 0 1 N N N N N N 9.462 31.930 82.838 4.426 -1.818 -0.569 O14 75I 23 75I O24 O14 O 0 1 N N N N N N 10.161 29.834 81.622 4.791 0.619 -1.114 O24 75I 24 75I O34 O15 O 0 1 N N N N N N 7.759 30.116 82.357 5.799 -0.248 1.031 O34 75I 25 75I H1 H1 H 0 1 N N N N N N 12.854 30.695 86.356 -0.280 -0.842 -1.056 H1 75I 26 75I H2 H2 H 0 1 N N N N N N 10.248 29.097 86.486 0.820 -0.561 1.777 H2 75I 27 75I H3 H3 H 0 1 N N N N N N 11.539 30.680 84.226 2.068 0.004 -0.951 H3 75I 28 75I H4 H4 H 0 1 N N N N N N 11.198 27.667 84.547 1.298 1.854 1.352 H4 75I 29 75I H5 H5 H 0 1 N N N N N N 13.911 26.786 89.695 -3.255 3.500 0.184 H5 75I 30 75I H6 H6 H 0 1 N N N N N N 13.543 26.049 85.904 0.156 5.051 -0.834 H6 75I 31 75I H7 H7 H 0 1 N N N N N N 13.931 32.373 88.516 -3.405 -4.353 0.233 H7 75I 32 75I H8 H8 H 0 1 N N N N N N 13.930 27.176 83.317 -0.488 3.454 0.821 H8 75I 33 75I H9 H9 H 0 1 N N N N N N 14.977 27.349 84.766 -1.448 3.289 -0.669 H9 75I 34 75I H10 H10 H 0 1 N N N N N N 11.265 31.105 90.771 -3.715 -1.474 -1.024 H10 75I 35 75I H11 H11 H 0 1 N N N N N N 12.236 27.708 86.596 -1.050 1.008 1.246 H11 75I 36 75I H12 H12 H 0 1 N N N N N N 13.720 29.400 84.530 0.198 1.573 -1.481 H12 75I 37 75I H13 H13 H 0 1 N N N N N N 10.657 31.563 87.180 2.285 -2.268 0.973 H13 75I 38 75I H14 H14 H 0 1 N N N N N N 11.181 29.051 82.408 3.235 2.531 0.129 H14 75I 39 75I H15 H15 H 0 1 N N N N N N 16.258 26.161 86.926 -5.633 1.491 -0.341 H15 75I 40 75I H16 H16 H 0 1 N N N N N N 10.185 32.207 82.288 4.273 -2.488 0.111 H16 75I 41 75I H17 H17 H 0 1 N N N N N N 7.705 29.563 81.586 6.651 -0.479 0.636 H17 75I 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 75I O24 P4 DOUB N N 1 75I O34 P4 SING N N 2 75I P4 O14 SING N N 3 75I P4 O4 SING N N 4 75I O5 C5 SING N N 5 75I O4 C4 SING N N 6 75I C5 C4 SING N N 7 75I C5 C6 SING N N 8 75I C06 C6 SING N N 9 75I C06 O06 SING N N 10 75I C4 C3 SING N N 11 75I C6 C1 SING N N 12 75I C3 O3 SING N N 13 75I C3 C2 SING N N 14 75I C1 C2 SING N N 15 75I C1 O1 SING N N 16 75I C2 O2 SING N N 17 75I O1 P1 SING N N 18 75I O11 P1 DOUB N N 19 75I O31 P1 SING N N 20 75I P1 O21 SING N N 21 75I O2 P2 SING N N 22 75I O22 P2 DOUB N N 23 75I O12 P2 SING N N 24 75I P2 O32 SING N N 25 75I C2 H1 SING N N 26 75I C3 H2 SING N N 27 75I C4 H3 SING N N 28 75I C5 H4 SING N N 29 75I O21 H5 SING N N 30 75I O06 H6 SING N N 31 75I O12 H7 SING N N 32 75I C06 H8 SING N N 33 75I C06 H9 SING N N 34 75I O32 H10 SING N N 35 75I C1 H11 SING N N 36 75I C6 H12 SING N N 37 75I O3 H13 SING N N 38 75I O5 H14 SING N N 39 75I O31 H15 SING N N 40 75I O14 H16 SING N N 41 75I O34 H17 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 75I InChI InChI 1.06 "InChI=1S/C7H17O15P3/c8-1-2-3(9)6(21-24(14,15)16)4(10)7(22-25(17,18)19)5(2)20-23(11,12)13/h2-10H,1H2,(H2,11,12,13)(H2,14,15,16)(H2,17,18,19)/t2-,3-,4-,5+,6+,7+/m0/s1" 75I InChIKey InChI 1.06 QCSGZYRCELECJV-YQHQLQMSSA-N 75I SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1[C@H](O)[C@@H](O[P](O)(O)=O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O" 75I SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" 75I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)O" 75I SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id 75I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R},2~{S},3~{S},4~{R},5~{S},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 75I _pdbx_chem_comp_synonyms.name "[(1R,2S,3S,4R,5S,6R)-2-(hydroxymethyl)-3,5-bis(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 75I "Create component" 2023-07-12 PDBE 75I "Initial release" 2024-02-28 RCSB #