data_762 # _chem_comp.id 762 _chem_comp.name "3-{5-[AMINO(IMINIO)METHYL]-6-CHLORO-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H15 Cl N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_10762 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.812 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 762 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O2M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 762 C1 C1 C 0 1 Y N N N N N 44.022 -2.905 25.802 -4.100 0.767 0.268 C1 762 1 762 C2 C2 C 0 1 Y N N N N N 43.972 -1.491 25.732 -4.392 -0.425 -0.408 C2 762 2 762 CL2 CL2 CL 0 0 N N N N N N 43.969 -0.600 24.176 -6.023 -0.765 -0.896 CL2 762 3 762 C3 C3 C 0 1 Y N N N N N 43.882 -0.735 26.923 -3.389 -1.323 -0.697 C3 762 4 762 C4 C4 C 0 1 Y N N N N N 43.841 -1.412 28.127 -2.083 -1.056 -0.307 C4 762 5 762 C5 C5 C 0 1 Y N N N N N 43.883 -2.757 28.197 -1.778 0.136 0.377 C5 762 6 762 C6 C6 C 0 1 Y N N N N N 43.976 -3.530 27.040 -2.796 1.046 0.663 C6 762 7 762 C7 C7 C 0 1 N N N N N N 44.143 -3.691 24.642 -5.182 1.728 0.568 C7 762 8 762 N1 N1 N 0 1 N N N N N N 43.772 -4.956 24.601 -6.251 1.333 1.258 N1 762 9 762 N2 N2 N 1 1 N N N N N N 44.676 -3.103 23.601 -5.088 2.989 0.149 N2 762 10 762 N3 N3 N 0 1 Y N N N N N 43.775 -1.020 29.363 -0.891 -1.738 -0.440 N3 762 11 762 N4 N4 N 0 1 Y N N N N N 43.844 -3.215 29.443 -0.444 0.126 0.625 N4 762 12 762 C8 C8 C 0 1 Y N N N N N 43.776 -2.080 30.130 0.083 -0.974 0.147 C8 762 13 762 "C1'" "C1'" C 0 1 Y N N N N N 43.610 -2.009 31.512 1.513 -1.336 0.227 "C1'" 762 14 762 "C2'" "C2'" C 0 1 Y N N N N N 43.250 -3.146 32.235 1.888 -2.655 0.489 "C2'" 762 15 762 "C3'" "C3'" C 0 1 Y N N N N N 43.079 -3.074 33.621 3.224 -2.994 0.564 "C3'" 762 16 762 "C4'" "C4'" C 0 1 Y N N N N N 43.267 -1.875 34.289 4.201 -2.034 0.381 "C4'" 762 17 762 "C5'" "C5'" C 0 1 Y N N N N N 43.630 -0.720 33.587 3.845 -0.713 0.120 "C5'" 762 18 762 "C6'" "C6'" C 0 1 Y N N N N N 43.803 -0.785 32.193 2.496 -0.360 0.036 "C6'" 762 19 762 "O6'" "O6'" O -1 1 N N N N N N 44.160 0.351 31.480 2.141 0.925 -0.218 "O6'" 762 20 762 C1B "C1''" C 0 1 Y N N N N N 43.825 0.473 34.290 4.897 0.315 -0.075 C1B 762 21 762 C2B "C2''" C 0 1 Y N N N N N 44.607 0.485 35.452 5.933 0.439 0.848 C2B 762 22 762 C3B "C3''" C 0 1 Y N N N N N 44.806 1.677 36.162 6.909 1.398 0.662 C3B 762 23 762 C4B "C4''" C 0 1 Y N N N N N 44.230 2.852 35.718 6.858 2.234 -0.439 C4B 762 24 762 C5B "C5''" C 0 1 Y N N N N N 43.457 2.846 34.571 5.832 2.116 -1.358 C5B 762 25 762 C6B "C6''" C 0 1 Y N N N N N 43.252 1.665 33.857 4.855 1.157 -1.185 C6B 762 26 762 HC3 HC3 H 0 1 N N N N N N 43.845 0.346 26.904 -3.619 -2.238 -1.222 HC3 762 27 762 HC6 HC6 H 0 1 N N N N N N 44.005 -4.606 27.108 -2.572 1.964 1.187 HC6 762 28 762 HH11 HH11 H 0 0 N N N N N N 43.418 -5.399 25.437 -6.996 1.941 1.389 HH11 762 29 762 HH12 HH12 H 0 0 N N N N N N 43.831 -5.526 23.787 -6.286 0.437 1.629 HH12 762 30 762 HH21 HH21 H 0 0 N N N N N N 44.973 -2.147 23.694 -4.309 3.277 -0.353 HH21 762 31 762 HH22 HH22 H 0 0 N N N N N N 44.842 -3.525 22.718 -5.800 3.619 0.342 HH22 762 32 762 HN3 HN3 H 0 1 N N N N N N 43.740 -0.102 29.742 -0.766 -2.599 -0.869 HN3 762 33 762 "HC2'" "HC2'" H 0 0 N N N N N N 43.100 -4.089 31.733 1.131 -3.412 0.633 "HC2'" 762 34 762 "HC3'" "HC3'" H 0 0 N N N N N N 42.795 -3.954 34.182 3.507 -4.017 0.767 "HC3'" 762 35 762 "HC4'" "HC4'" H 0 0 N N N N N N 43.124 -1.841 35.360 5.243 -2.309 0.442 "HC4'" 762 36 762 H2B "H2''" H 0 1 N N N N N N 45.061 -0.429 35.810 5.973 -0.213 1.708 H2B 762 37 762 H3B "H3''" H 0 1 N N N N N N 45.408 1.681 37.060 7.712 1.495 1.377 H3B 762 38 762 H4B "H4''" H 0 1 N N N N N N 44.384 3.771 36.265 7.624 2.983 -0.580 H4B 762 39 762 H5B "H5''" H 0 1 N N N N N N 43.013 3.768 34.224 5.797 2.772 -2.215 H5B 762 40 762 H6B "H6''" H 0 1 N N N N N N 42.645 1.682 32.963 4.054 1.065 -1.904 H6B 762 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 762 C1 C2 DOUB Y N 1 762 C1 C6 SING Y N 2 762 C1 C7 SING N N 3 762 C2 CL2 SING N N 4 762 C2 C3 SING Y N 5 762 C3 C4 DOUB Y N 6 762 C3 HC3 SING N N 7 762 C4 C5 SING Y N 8 762 C4 N3 SING Y N 9 762 C5 C6 DOUB Y N 10 762 C5 N4 SING Y N 11 762 C6 HC6 SING N N 12 762 C7 N1 SING N N 13 762 C7 N2 DOUB N N 14 762 N1 HH11 SING N N 15 762 N1 HH12 SING N N 16 762 N2 HH21 SING N N 17 762 N2 HH22 SING N N 18 762 N3 C8 SING Y N 19 762 N3 HN3 SING N N 20 762 N4 C8 DOUB Y N 21 762 C8 "C1'" SING Y N 22 762 "C1'" "C2'" DOUB Y N 23 762 "C1'" "C6'" SING Y N 24 762 "C2'" "C3'" SING Y N 25 762 "C2'" "HC2'" SING N N 26 762 "C3'" "C4'" DOUB Y N 27 762 "C3'" "HC3'" SING N N 28 762 "C4'" "C5'" SING Y N 29 762 "C4'" "HC4'" SING N N 30 762 "C5'" "C6'" DOUB Y N 31 762 "C5'" C1B SING Y N 32 762 "C6'" "O6'" SING N N 33 762 C1B C2B DOUB Y N 34 762 C1B C6B SING Y N 35 762 C2B C3B SING Y N 36 762 C2B H2B SING N N 37 762 C3B C4B DOUB Y N 38 762 C3B H3B SING N N 39 762 C4B C5B SING Y N 40 762 C4B H4B SING N N 41 762 C5B C6B DOUB Y N 42 762 C5B H5B SING N N 43 762 C6B H6B SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 762 SMILES ACDLabs 10.04 "[O-]c4c(c1ccccc1)cccc4c3nc2cc(c(Cl)cc2n3)\C(=[NH2+])N" 762 SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1cc2nc([nH]c2cc1Cl)c3cccc(c3[O-])c4ccccc4" 762 SMILES CACTVS 3.341 "NC(=[NH2+])c1cc2nc([nH]c2cc1Cl)c3cccc(c3[O-])c4ccccc4" 762 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)c2cccc(c2[O-])c3[nH]c4cc(c(cc4n3)C(=[NH2+])N)Cl" 762 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)c2cccc(c2[O-])c3[nH]c4cc(c(cc4n3)C(=[NH2+])N)Cl" 762 InChI InChI 1.03 "InChI=1S/C20H15ClN4O/c21-15-10-17-16(9-14(15)19(22)23)24-20(25-17)13-8-4-7-12(18(13)26)11-5-2-1-3-6-11/h1-10,26H,(H3,22,23)(H,24,25)" 762 InChIKey InChI 1.03 RPGVMAPDADAHPV-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 762 "SYSTEMATIC NAME" ACDLabs 10.04 "3-{5-[amino(iminio)methyl]-6-chloro-1H-benzimidazol-2-yl}biphenyl-2-olate" 762 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[5-(amino-azaniumylidene-methyl)-6-chloro-1H-benzimidazol-2-yl]-6-phenyl-phenolate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 762 "Create component" 2003-03-14 RCSB 762 "Modify aromatic_flag" 2011-06-04 RCSB 762 "Modify descriptor" 2011-06-04 RCSB 762 "Modify synonyms" 2020-06-05 PDBE 762 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 762 _pdbx_chem_comp_synonyms.name CRA_10762 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 762 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom "O6'" _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #