data_76K # _chem_comp.id 76K _chem_comp.name "[(2~{S},5~{R})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-(3-oxidanylpropyl)azanium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H31 N7 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2016-09-06 _chem_comp.pdbx_modified_date 2016-09-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.482 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 76K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LSZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 76K C2 C1 C 0 1 Y N N 17.173 12.976 37.294 -6.010 -0.963 -1.496 C2 76K 1 76K C6 C2 C 0 1 Y N N 17.127 12.841 34.931 -4.177 0.080 -0.328 C6 76K 2 76K C8 C3 C 0 1 Y N N 15.987 14.665 34.437 -2.566 -1.378 -0.704 C8 76K 3 76K C10 C4 C 0 1 Y N N 16.771 13.525 36.068 -4.661 -0.987 -1.104 C10 76K 4 76K C11 C5 C 0 1 N N R 16.725 13.275 32.460 -1.921 0.633 0.678 C11 76K 5 76K C13 C6 C 0 1 N N R 14.866 13.924 31.122 0.250 0.795 1.409 C13 76K 6 76K C14 C7 C 0 1 N N N 13.795 14.989 31.286 1.616 0.106 1.393 C14 76K 7 76K C15 C8 C 0 1 N N S 13.897 16.187 30.339 2.400 0.556 0.159 C15 76K 8 76K C16 C9 C 0 1 N N N 15.216 16.953 30.475 3.713 -0.225 0.077 C16 76K 9 76K C24 C10 C 0 1 N N N 11.403 16.654 30.711 3.322 2.454 -0.984 C24 76K 10 76K C25 C11 C 0 1 N N N 10.398 17.777 30.571 3.504 3.972 -0.931 C25 76K 11 76K C26 C12 C 0 1 N N N 8.974 17.298 30.644 4.161 4.451 -2.227 C26 76K 12 76K C28 C13 C 0 1 N N S 14.516 12.599 31.807 -0.545 0.392 2.674 C28 76K 13 76K N1 N1 N 0 1 N N N 16.887 13.548 38.467 -6.543 -1.986 -2.260 N1 76K 14 76K N3 N2 N 0 1 Y N N 17.881 11.813 37.281 -6.763 0.062 -1.111 N3 76K 15 76K C4 C14 C 0 1 Y N N 18.161 11.248 36.088 -6.263 1.043 -0.382 C4 76K 16 76K N5 N3 N 0 1 Y N N 17.829 11.686 34.874 -5.005 1.065 0.004 N5 76K 17 76K N7 N4 N 0 1 Y N N 16.622 13.576 33.884 -2.853 -0.194 -0.092 N7 76K 18 76K N9 N5 N 0 1 Y N N 16.057 14.667 35.742 -3.627 -1.841 -1.297 N9 76K 19 76K O12 O1 O 0 1 N N N 16.119 14.348 31.717 -0.558 0.335 0.303 O12 76K 20 76K C17 C15 C 0 1 N N N 16.297 16.520 29.511 3.412 -1.703 -0.178 C17 76K 21 76K C18 C16 C 0 1 N N R 17.562 17.365 29.616 4.720 -2.496 -0.188 C18 76K 22 76K N19 N6 N 1 1 N N N 18.327 17.012 30.850 5.333 -2.448 1.147 N19 76K 23 76K C20 C17 C 0 1 N N N 18.455 17.225 28.373 4.437 -3.928 -0.560 C20 76K 24 76K O21 O2 O 0 1 N N N 19.655 16.928 28.561 4.261 -4.266 -1.847 O21 76K 25 76K O22 O3 O 0 1 N N N 17.915 17.421 27.250 4.368 -4.774 0.301 O22 76K 26 76K N23 N7 N 1 1 N N N 12.789 17.182 30.598 2.691 1.993 0.260 N23 76K 27 76K O27 O4 O 0 1 N N N 8.695 16.427 29.558 4.331 5.870 -2.178 O27 76K 28 76K O29 O5 O 0 1 N N N 13.724 11.786 30.946 -0.430 1.400 3.680 O29 76K 29 76K C30 C18 C 0 1 N N R 15.917 12.009 32.092 -2.005 0.284 2.180 C30 76K 30 76K O31 O6 O 0 1 N N N 16.464 11.367 30.951 -2.837 1.222 2.866 O31 76K 31 76K H46 H1 H 0 1 N N N 15.489 15.429 33.859 -1.599 -1.860 -0.698 H46 76K 32 76K H32 H2 H 0 1 N N N 17.776 13.137 32.167 -2.134 1.691 0.521 H32 76K 33 76K H33 H3 H 0 1 N N N 15.013 13.734 30.048 0.371 1.878 1.365 H33 76K 34 76K H47 H4 H 0 1 N N N 13.851 15.368 32.317 2.168 0.376 2.293 H47 76K 35 76K H48 H5 H 0 1 N N N 12.817 14.512 31.123 1.477 -0.974 1.362 H48 76K 36 76K H34 H6 H 0 1 N N N 13.810 15.823 29.305 1.808 0.367 -0.736 H34 76K 37 76K H49 H7 H 0 1 N N N 15.592 16.810 31.499 4.319 0.168 -0.739 H49 76K 38 76K H50 H8 H 0 1 N N N 15.012 18.020 30.305 4.257 -0.121 1.016 H50 76K 39 76K H54 H9 H 0 1 N N N 11.277 16.175 31.693 2.687 2.193 -1.831 H54 76K 40 76K H53 H10 H 0 1 N N N 11.231 15.913 29.916 4.294 1.974 -1.097 H53 76K 41 76K H55 H11 H 0 1 N N N 10.554 18.269 29.600 2.531 4.451 -0.818 H55 76K 42 76K H56 H12 H 0 1 N N N 10.567 18.502 31.381 4.138 4.233 -0.084 H56 76K 43 76K H57 H13 H 0 1 N N N 8.296 18.163 30.599 5.134 3.973 -2.340 H57 76K 44 76K H58 H14 H 0 1 N N N 8.819 16.760 31.591 3.527 4.191 -3.074 H58 76K 45 76K H41 H15 H 0 1 N N N 13.999 12.797 32.758 -0.198 -0.569 3.053 H41 76K 46 76K H43 H16 H 0 1 N N N 17.264 12.994 39.209 -5.984 -2.731 -2.531 H43 76K 47 76K H44 H17 H 0 1 N N N 17.288 14.464 38.498 -7.476 -1.958 -2.525 H44 76K 48 76K H45 H18 H 0 1 N N N 18.724 10.327 36.121 -6.911 1.857 -0.091 H45 76K 49 76K H52 H19 H 0 1 N N N 15.906 16.601 28.486 2.763 -2.083 0.612 H52 76K 50 76K H51 H20 H 0 1 N N N 16.557 15.472 29.723 2.914 -1.812 -1.141 H51 76K 51 76K H35 H21 H 0 1 N N N 17.257 18.419 29.691 5.404 -2.060 -0.917 H35 76K 52 76K H36 H22 H 0 1 N N N 17.734 17.108 31.649 5.522 -1.489 1.395 H36 76K 53 76K H37 H23 H 0 1 N N N 18.648 16.067 30.784 4.700 -2.852 1.821 H37 76K 54 76K H38 H24 H 0 1 N N N 19.112 17.625 30.942 6.196 -2.971 1.140 H38 76K 55 76K H1 H25 H 0 1 N N N 20.102 16.872 27.725 4.082 -5.197 -2.036 H1 76K 56 76K H39 H26 H 0 1 N N N 13.002 17.650 31.456 1.831 2.500 0.409 H39 76K 57 76K H40 H27 H 0 1 N N N 12.798 17.842 29.847 3.316 2.156 1.035 H40 76K 58 76K H59 H28 H 0 1 N N N 7.794 16.130 29.613 4.743 6.244 -2.969 H59 76K 59 76K H60 H29 H 0 1 N N N 13.515 10.969 31.384 -0.910 1.199 4.495 H60 76K 60 76K H42 H30 H 0 1 N N N 15.869 11.331 32.957 -2.380 -0.731 2.315 H42 76K 61 76K H61 H31 H 0 1 N N N 17.322 11.018 31.164 -2.877 1.085 3.823 H61 76K 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 76K O22 C20 DOUB N N 1 76K C20 O21 SING N N 2 76K C20 C18 SING N N 3 76K C17 C18 SING N N 4 76K C17 C16 SING N N 5 76K O27 C26 SING N N 6 76K C18 N19 SING N N 7 76K C15 C16 SING N N 8 76K C15 N23 SING N N 9 76K C15 C14 SING N N 10 76K C25 C26 SING N N 11 76K C25 C24 SING N N 12 76K N23 C24 SING N N 13 76K O29 C28 SING N N 14 76K O31 C30 SING N N 15 76K C13 C14 SING N N 16 76K C13 O12 SING N N 17 76K C13 C28 SING N N 18 76K O12 C11 SING N N 19 76K C28 C30 SING N N 20 76K C30 C11 SING N N 21 76K C11 N7 SING N N 22 76K N7 C8 SING Y N 23 76K N7 C6 SING Y N 24 76K C8 N9 DOUB Y N 25 76K N5 C6 DOUB Y N 26 76K N5 C4 SING Y N 27 76K C6 C10 SING Y N 28 76K N9 C10 SING Y N 29 76K C10 C2 DOUB Y N 30 76K C4 N3 DOUB Y N 31 76K N3 C2 SING Y N 32 76K C2 N1 SING N N 33 76K C8 H46 SING N N 34 76K C11 H32 SING N N 35 76K C13 H33 SING N N 36 76K C14 H47 SING N N 37 76K C14 H48 SING N N 38 76K C15 H34 SING N N 39 76K C16 H49 SING N N 40 76K C16 H50 SING N N 41 76K C24 H54 SING N N 42 76K C24 H53 SING N N 43 76K C25 H55 SING N N 44 76K C25 H56 SING N N 45 76K C26 H57 SING N N 46 76K C26 H58 SING N N 47 76K C28 H41 SING N N 48 76K N1 H43 SING N N 49 76K N1 H44 SING N N 50 76K C4 H45 SING N N 51 76K C17 H52 SING N N 52 76K C17 H51 SING N N 53 76K C18 H35 SING N N 54 76K N19 H36 SING N N 55 76K N19 H37 SING N N 56 76K N19 H38 SING N N 57 76K O21 H1 SING N N 58 76K N23 H39 SING N N 59 76K N23 H40 SING N N 60 76K O27 H59 SING N N 61 76K O29 H60 SING N N 62 76K C30 H42 SING N N 63 76K O31 H61 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 76K InChI InChI 1.03 "InChI=1S/C18H29N7O6/c19-10(18(29)30)3-2-9(21-4-1-5-26)6-11-13(27)14(28)17(31-11)25-8-24-12-15(20)22-7-23-16(12)25/h7-11,13-14,17,21,26-28H,1-6,19H2,(H,29,30)(H2,20,22,23)/p+2/t9-,10+,11+,13+,14+,17+/m0/s1" 76K InChIKey InChI 1.03 UXRCPBKKSMEZKD-BRZDOZMNSA-P 76K SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](C[C@H](CC[C@@H]([NH3+])C(O)=O)[NH2+]CCCO)[C@@H](O)[C@H]3O" 76K SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](C[CH](CC[CH]([NH3+])C(O)=O)[NH2+]CCCO)[CH](O)[CH]3O" 76K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C[C@H](CC[C@H](C(=O)O)[NH3+])[NH2+]CCCO)O)O)N" 76K SMILES "OpenEye OEToolkits" 2.0.5 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CC(CCC(C(=O)O)[NH3+])[NH2+]CCCO)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 76K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[(2~{S},5~{R})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-(3-oxidanylpropyl)azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 76K "Create component" 2016-09-06 EBI 76K "Initial release" 2016-10-05 RCSB #