data_76M # _chem_comp.id 76M _chem_comp.name "[(2~{S},5~{R})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-(2-methylpropyl)azanium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H33 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2016-09-06 _chem_comp.pdbx_modified_date 2016-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 439.509 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 76M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LSY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 76M C1 C1 C 0 1 N N N 8.900 17.015 30.169 4.559 4.118 -2.896 C1 76M 1 76M C2 C2 C 0 1 N N N 10.300 17.623 30.091 3.767 3.892 -1.607 C2 76M 2 76M C3 C3 C 0 1 N N N 10.395 18.881 30.953 2.431 4.633 -1.692 C3 76M 3 76M C6 C4 C 0 1 N N S 13.836 16.128 30.154 2.483 0.752 -0.007 C6 76M 4 76M C7 C5 C 0 1 N N N 15.155 16.893 30.290 3.748 -0.106 0.038 C7 76M 5 76M C8 C6 C 0 1 N N N 16.241 16.470 29.325 3.361 -1.586 0.029 C8 76M 6 76M C11 C7 C 0 1 N N N 18.402 17.208 28.195 4.249 -3.897 -0.118 C11 76M 7 76M C14 C8 C 0 1 N N N 13.733 14.942 31.111 1.678 0.542 1.276 C14 76M 8 76M C15 C9 C 0 1 N N R 14.785 13.866 30.928 0.353 1.303 1.178 C15 76M 9 76M C23 C10 C 0 1 Y N N 15.920 14.560 34.208 -2.283 -1.305 -0.654 C23 76M 10 76M C25 C11 C 0 1 Y N N 16.740 13.402 35.812 -4.425 -1.195 -0.978 C25 76M 11 76M C26 C12 C 0 1 Y N N 17.168 12.830 37.018 -5.780 -1.357 -1.312 C26 76M 12 76M C31 C13 C 0 1 Y N N 17.090 12.743 34.661 -4.046 -0.032 -0.286 C31 76M 13 76M C4 C14 C 0 1 N N N 11.343 16.585 30.491 3.510 2.396 -1.421 C4 76M 14 76M N5 N1 N 1 1 N N N 12.728 17.125 30.390 2.855 2.168 -0.126 N5 76M 15 76M C9 C15 C 0 1 N N R 17.516 17.301 29.447 4.628 -2.445 0.015 C9 76M 16 76M N10 N2 N 1 1 N N N 18.284 16.896 30.663 5.369 -2.244 1.267 N10 76M 17 76M O12 O1 O 0 1 N N N 17.844 17.382 27.078 4.229 -4.608 0.859 O12 76M 18 76M O13 O2 O 0 1 N N N 19.627 16.966 28.371 3.934 -4.401 -1.322 O13 76M 19 76M O16 O3 O 0 1 N N N 16.052 14.281 31.483 -0.470 0.720 0.154 O16 76M 20 76M C17 C16 C 0 1 N N R 16.662 13.200 32.216 -1.840 0.844 0.593 C17 76M 21 76M C18 C17 C 0 1 N N R 15.842 11.940 31.856 -1.763 0.532 2.109 C18 76M 22 76M O19 O4 O 0 1 N N N 16.337 11.283 30.699 -2.852 1.138 2.809 O19 76M 23 76M C20 C18 C 0 1 N N S 14.437 12.555 31.628 -0.418 1.186 2.507 C20 76M 24 76M O21 O5 O 0 1 N N N 13.613 11.773 30.770 -0.638 2.480 3.073 O21 76M 25 76M N22 N3 N 0 1 Y N N 16.565 13.486 33.635 -2.691 -0.132 -0.092 N22 76M 26 76M N24 N4 N 0 1 Y N N 16.006 14.542 35.515 -3.301 -1.926 -1.176 N24 76M 27 76M N27 N5 N 0 1 N N N 16.892 13.376 38.210 -6.212 -2.481 -1.993 N27 76M 28 76M N28 N6 N 0 1 Y N N 17.891 11.677 36.980 -6.637 -0.405 -0.958 N28 76M 29 76M C29 C19 C 0 1 Y N N 18.162 11.138 35.771 -6.234 0.672 -0.308 C29 76M 30 76M N30 N7 N 0 1 Y N N 17.805 11.598 34.572 -4.975 0.865 0.026 N30 76M 31 76M H44 H1 H 0 1 N N N 8.155 17.770 29.879 3.988 3.740 -3.744 H44 76M 32 76M H43 H2 H 0 1 N N N 8.835 16.155 29.486 4.743 5.184 -3.028 H43 76M 33 76M H45 H3 H 0 1 N N N 8.702 16.681 31.198 5.511 3.590 -2.835 H45 76M 34 76M H46 H4 H 0 1 N N N 10.488 17.911 29.046 4.339 4.271 -0.759 H46 76M 35 76M H49 H5 H 0 1 N N N 11.410 19.300 30.881 1.860 4.255 -2.540 H49 76M 36 76M H48 H6 H 0 1 N N N 9.666 19.624 30.598 1.867 4.472 -0.774 H48 76M 37 76M H47 H7 H 0 1 N N N 10.178 18.625 32.000 2.615 5.699 -1.824 H47 76M 38 76M H34 H8 H 0 1 N N N 13.758 15.752 29.123 1.878 0.463 -0.867 H34 76M 39 76M H52 H9 H 0 1 N N N 15.531 16.746 31.313 4.368 0.113 -0.832 H52 76M 40 76M H53 H10 H 0 1 N N N 14.949 17.961 30.125 4.307 0.118 0.947 H53 76M 41 76M H55 H11 H 0 1 N N N 15.855 16.571 28.300 2.778 -1.815 0.921 H55 76M 42 76M H54 H12 H 0 1 N N N 16.491 15.417 29.521 2.767 -1.801 -0.859 H54 76M 43 76M H56 H13 H 0 1 N N N 13.816 15.327 32.138 1.477 -0.521 1.410 H56 76M 44 76M H57 H14 H 0 1 N N N 12.745 14.478 30.972 2.248 0.914 2.128 H57 76M 45 76M H39 H15 H 0 1 N N N 14.901 13.667 29.852 0.544 2.351 0.948 H39 76M 46 76M H60 H16 H 0 1 N N N 15.405 15.325 33.647 -1.265 -1.664 -0.667 H60 76M 47 76M H51 H17 H 0 1 N N N 11.157 16.275 31.530 2.864 2.036 -2.223 H51 76M 48 76M H50 H18 H 0 1 N N N 11.251 15.713 29.826 4.457 1.858 -1.449 H50 76M 49 76M H32 H19 H 0 1 N N N 12.929 17.602 31.245 2.027 2.740 -0.062 H32 76M 50 76M H33 H20 H 0 1 N N N 12.743 17.778 29.632 3.490 2.412 0.619 H33 76M 51 76M H35 H21 H 0 1 N N N 17.219 18.353 29.566 5.254 -2.154 -0.829 H35 76M 52 76M H36 H22 H 0 1 N N N 17.694 16.962 31.468 4.790 -2.514 2.048 H36 76M 53 76M H38 H23 H 0 1 N N N 18.601 15.953 30.558 6.205 -2.810 1.257 H38 76M 54 76M H37 H24 H 0 1 N N N 19.072 17.502 30.777 5.623 -1.272 1.356 H37 76M 55 76M H1 H25 H 0 1 N N N 20.068 16.934 27.530 3.698 -5.338 -1.357 H1 76M 56 76M H40 H26 H 0 1 N N N 17.710 13.058 31.914 -2.206 1.857 0.424 H40 76M 57 76M H41 H27 H 0 1 N N N 15.810 11.261 32.721 -1.740 -0.543 2.284 H41 76M 58 76M H58 H28 H 0 1 N N N 17.197 10.922 30.882 -2.848 0.971 3.762 H58 76M 59 76M H42 H29 H 0 1 N N N 13.951 12.754 32.595 0.123 0.549 3.207 H42 76M 60 76M H59 H30 H 0 1 N N N 13.393 10.955 31.200 -1.120 2.466 3.911 H59 76M 61 76M H62 H31 H 0 1 N N N 17.288 12.812 38.935 -5.577 -3.169 -2.246 H62 76M 62 76M H61 H32 H 0 1 N N N 17.281 14.296 38.253 -7.151 -2.581 -2.218 H61 76M 63 76M H63 H33 H 0 1 N N N 18.737 10.224 35.777 -6.964 1.421 -0.039 H63 76M 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 76M O12 C11 DOUB N N 1 76M C11 O13 SING N N 2 76M C11 C9 SING N N 3 76M C8 C9 SING N N 4 76M C8 C7 SING N N 5 76M C9 N10 SING N N 6 76M C2 C1 SING N N 7 76M C2 C4 SING N N 8 76M C2 C3 SING N N 9 76M C6 C7 SING N N 10 76M C6 N5 SING N N 11 76M C6 C14 SING N N 12 76M N5 C4 SING N N 13 76M O19 C18 SING N N 14 76M O21 C20 SING N N 15 76M C15 C14 SING N N 16 76M C15 O16 SING N N 17 76M C15 C20 SING N N 18 76M O16 C17 SING N N 19 76M C20 C18 SING N N 20 76M C18 C17 SING N N 21 76M C17 N22 SING N N 22 76M N22 C23 SING Y N 23 76M N22 C31 SING Y N 24 76M C23 N24 DOUB Y N 25 76M N30 C31 DOUB Y N 26 76M N30 C29 SING Y N 27 76M C31 C25 SING Y N 28 76M N24 C25 SING Y N 29 76M C29 N28 DOUB Y N 30 76M C25 C26 DOUB Y N 31 76M N28 C26 SING Y N 32 76M C26 N27 SING N N 33 76M C1 H44 SING N N 34 76M C1 H43 SING N N 35 76M C1 H45 SING N N 36 76M C2 H46 SING N N 37 76M C3 H49 SING N N 38 76M C3 H48 SING N N 39 76M C3 H47 SING N N 40 76M C6 H34 SING N N 41 76M C7 H52 SING N N 42 76M C7 H53 SING N N 43 76M C8 H55 SING N N 44 76M C8 H54 SING N N 45 76M C14 H56 SING N N 46 76M C14 H57 SING N N 47 76M C15 H39 SING N N 48 76M C23 H60 SING N N 49 76M C4 H51 SING N N 50 76M C4 H50 SING N N 51 76M N5 H32 SING N N 52 76M N5 H33 SING N N 53 76M C9 H35 SING N N 54 76M N10 H36 SING N N 55 76M N10 H38 SING N N 56 76M N10 H37 SING N N 57 76M O13 H1 SING N N 58 76M C17 H40 SING N N 59 76M C18 H41 SING N N 60 76M O19 H58 SING N N 61 76M C20 H42 SING N N 62 76M O21 H59 SING N N 63 76M N27 H62 SING N N 64 76M N27 H61 SING N N 65 76M C29 H63 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 76M InChI InChI 1.03 "InChI=1S/C19H31N7O5/c1-9(2)6-22-10(3-4-11(20)19(29)30)5-12-14(27)15(28)18(31-12)26-8-25-13-16(21)23-7-24-17(13)26/h7-12,14-15,18,22,27-28H,3-6,20H2,1-2H3,(H,29,30)(H2,21,23,24)/p+2/t10-,11+,12+,14+,15+,18+/m0/s1" 76M InChIKey InChI 1.03 JFKLCPCUECHESR-SNDYUSLUSA-P 76M SMILES_CANONICAL CACTVS 3.385 "CC(C)C[NH2+][C@@H](CC[C@@H]([NH3+])C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 76M SMILES CACTVS 3.385 "CC(C)C[NH2+][CH](CC[CH]([NH3+])C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 76M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(C)C[NH2+][C@@H](CC[C@H](C(=O)O)[NH3+])C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 76M SMILES "OpenEye OEToolkits" 2.0.5 "CC(C)C[NH2+]C(CCC(C(=O)O)[NH3+])CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 76M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[(2~{S},5~{R})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-(2-methylpropyl)azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 76M "Create component" 2016-09-06 EBI 76M "Initial release" 2016-10-12 RCSB #