data_76O # _chem_comp.id 76O _chem_comp.name "[(2~{R},5~{S})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-(phenylmethyl)azanium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2016-09-06 _chem_comp.pdbx_modified_date 2016-09-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.525 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 76O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LSX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 76O C2 C1 C 0 1 Y N N -1.121 31.630 -18.725 6.321 -0.078 0.651 C2 76O 1 76O C6 C2 C 0 1 Y N N 1.026 30.726 -18.328 4.199 -0.910 -0.135 C6 76O 2 76O C8 C3 C 0 1 Y N N 0.539 28.619 -17.921 2.829 0.011 1.326 C8 76O 3 76O C10 C4 C 0 1 Y N N -0.330 30.516 -18.411 4.924 -0.139 0.790 C10 76O 4 76O C11 C5 C 0 1 N N R 2.994 29.233 -17.821 1.740 -1.426 -0.440 C11 76O 5 76O C13 C6 C 0 1 N N R 3.830 27.732 -16.228 -0.548 -1.618 -0.423 C13 76O 6 76O C14 C7 C 0 1 N N N 3.340 26.503 -15.491 -1.822 -1.169 0.293 C14 76O 7 76O C15 C8 C 0 1 N N R 2.996 25.302 -16.373 -2.363 0.098 -0.374 C15 76O 8 76O C16 C9 C 0 1 N N N 4.082 24.911 -17.376 -3.702 0.477 0.261 C16 76O 9 76O C24 C10 C 0 1 N N N 1.513 24.239 -14.626 -1.873 2.382 -0.918 C24 76O 10 76O C25 C11 C 0 1 Y N N 1.219 22.962 -13.885 -0.925 3.528 -0.673 C25 76O 11 76O C26 C12 C 0 1 Y N N 1.649 22.790 -12.579 0.155 3.723 -1.514 C26 76O 12 76O C27 C13 C 0 1 Y N N 1.379 21.623 -11.904 1.024 4.774 -1.289 C27 76O 13 76O C28 C14 C 0 1 Y N N 0.680 20.618 -12.522 0.814 5.630 -0.225 C28 76O 14 76O C31 C15 C 0 1 N N S 3.603 29.066 -15.512 -0.053 -2.964 0.153 C31 76O 15 76O N1 N1 N 0 1 N N N -2.446 31.571 -18.838 7.088 0.665 1.532 N1 76O 16 76O N3 N2 N 0 1 Y N N -0.508 32.825 -18.924 6.890 -0.753 -0.343 N3 76O 17 76O C4 C16 C 0 1 Y N N 0.835 32.878 -18.809 6.166 -1.468 -1.185 C4 76O 18 76O N5 N3 N 0 1 Y N N 1.672 31.888 -18.517 4.856 -1.555 -1.094 N5 76O 19 76O N7 N4 N 0 1 Y N N 1.579 29.513 -18.015 2.881 -0.796 0.228 N7 76O 20 76O N9 N5 N 0 1 Y N N -0.630 29.189 -18.154 4.028 0.395 1.654 N9 76O 21 76O O12 O1 O 0 1 N N N 3.125 27.859 -17.460 0.528 -0.690 -0.166 O12 76O 22 76O C17 C17 C 0 1 N N N 3.613 24.827 -18.814 -4.740 -0.601 -0.058 C17 76O 23 76O C18 C18 C 0 1 N N S 4.369 25.745 -19.773 -6.110 -0.159 0.462 C18 76O 24 76O N19 N6 N 1 1 N N N 3.498 26.107 -20.930 -6.074 -0.075 1.928 N19 76O 25 76O C20 C19 C 0 1 N N N 5.666 25.101 -20.288 -7.154 -1.161 0.042 C20 76O 26 76O O21 O2 O 0 1 N N N 6.294 24.371 -19.490 -7.653 -1.128 -1.204 O21 76O 27 76O O22 O3 O 0 1 N N N 6.008 25.349 -21.466 -7.542 -1.994 0.826 O22 76O 28 76O N23 N7 N 1 1 N N N 2.718 24.112 -15.495 -1.405 1.196 -0.189 N23 76O 29 76O C29 C20 C 0 1 Y N N 0.248 20.774 -13.815 -0.266 5.435 0.616 C29 76O 30 76O C30 C21 C 0 1 Y N N 0.515 21.939 -14.496 -1.139 4.388 0.388 C30 76O 31 76O O32 O4 O 0 1 N N N 4.629 29.304 -14.561 -0.470 -4.048 -0.679 O32 76O 32 76O C33 C22 C 0 1 N N R 3.648 30.052 -16.689 1.487 -2.834 0.141 C33 76O 33 76O O34 O5 O 0 1 N N N 4.981 30.412 -17.013 2.067 -3.834 -0.698 O34 76O 34 76O H49 H1 H 0 1 N N N 0.663 27.573 -17.684 1.925 0.290 1.847 H49 76O 35 76O H35 H2 H 0 1 N N N 3.541 29.431 -18.755 1.914 -1.484 -1.515 H35 76O 36 76O H36 H3 H 0 1 N N N 4.907 27.620 -16.423 -0.726 -1.707 -1.495 H36 76O 37 76O H51 H4 H 0 1 N N N 2.436 26.782 -14.930 -2.571 -1.959 0.233 H51 76O 38 76O H50 H5 H 0 1 N N N 4.127 26.193 -14.788 -1.597 -0.960 1.339 H50 76O 39 76O H37 H6 H 0 1 N N N 2.081 25.541 -16.935 -2.504 -0.085 -1.439 H37 76O 40 76O H52 H7 H 0 1 N N N 4.478 23.926 -17.086 -3.582 0.558 1.341 H52 76O 41 76O H53 H8 H 0 1 N N N 4.886 25.660 -17.321 -4.037 1.433 -0.141 H53 76O 42 76O H56 H9 H 0 1 N N N 1.685 25.043 -13.895 -2.869 2.654 -0.568 H56 76O 43 76O H57 H10 H 0 1 N N N 0.647 24.493 -15.254 -1.909 2.162 -1.985 H57 76O 44 76O H58 H11 H 0 1 N N N 2.200 23.578 -12.088 0.320 3.054 -2.345 H58 76O 45 76O H59 H12 H 0 1 N N N 1.718 21.498 -10.886 1.868 4.927 -1.946 H59 76O 46 76O H60 H13 H 0 1 N N N 0.469 19.702 -11.990 1.493 6.451 -0.049 H60 76O 47 76O H44 H14 H 0 1 N N N 2.606 29.080 -15.047 -0.419 -3.102 1.170 H44 76O 48 76O H47 H15 H 0 1 N N N -2.802 32.477 -19.067 6.662 1.150 2.256 H47 76O 49 76O H46 H16 H 0 1 N N N -2.690 30.925 -19.561 8.052 0.700 1.426 H46 76O 50 76O H48 H17 H 0 1 N N N 1.286 33.845 -18.975 6.669 -2.000 -1.979 H48 76O 51 76O H54 H18 H 0 1 N N N 2.547 25.097 -18.846 -4.792 -0.749 -1.136 H54 76O 52 76O H55 H19 H 0 1 N N N 3.739 23.790 -19.158 -4.453 -1.536 0.424 H55 76O 53 76O H38 H20 H 0 1 N N N 4.635 26.665 -19.231 -6.357 0.819 0.048 H38 76O 54 76O H39 H21 H 0 1 N N N 2.654 26.526 -20.594 -5.845 -0.979 2.311 H39 76O 55 76O H41 H22 H 0 1 N N N 3.980 26.755 -21.520 -5.375 0.596 2.209 H41 76O 56 76O H40 H23 H 0 1 N N N 3.276 25.283 -21.451 -6.977 0.217 2.271 H40 76O 57 76O H1 H24 H 0 1 N N N 7.073 24.032 -19.916 -8.321 -1.791 -1.427 H1 76O 58 76O H43 H25 H 0 1 N N N 2.593 23.314 -16.084 -1.328 1.413 0.794 H43 76O 59 76O H42 H26 H 0 1 N N N 3.513 23.969 -14.905 -0.502 0.918 -0.543 H42 76O 60 76O H61 H27 H 0 1 N N N -0.303 19.981 -14.299 -0.431 6.104 1.448 H61 76O 61 76O H62 H28 H 0 1 N N N 0.173 22.056 -15.514 -1.985 4.238 1.042 H62 76O 62 76O H63 H29 H 0 1 N N N 4.560 28.672 -13.855 -0.187 -4.918 -0.364 H63 76O 63 76O H45 H30 H 0 1 N N N 3.032 30.935 -16.463 1.883 -2.906 1.154 H45 76O 64 76O H64 H31 H 0 1 N N N 5.356 30.914 -16.299 1.938 -4.738 -0.380 H64 76O 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 76O O22 C20 DOUB N N 1 76O N19 C18 SING N N 2 76O C20 C18 SING N N 3 76O C20 O21 SING N N 4 76O C18 C17 SING N N 5 76O N3 C4 DOUB Y N 6 76O N3 C2 SING Y N 7 76O N1 C2 SING N N 8 76O C17 C16 SING N N 9 76O C4 N5 SING Y N 10 76O C2 C10 DOUB Y N 11 76O N5 C6 DOUB Y N 12 76O C10 C6 SING Y N 13 76O C10 N9 SING Y N 14 76O C6 N7 SING Y N 15 76O N9 C8 DOUB Y N 16 76O N7 C8 SING Y N 17 76O N7 C11 SING N N 18 76O C11 O12 SING N N 19 76O C11 C33 SING N N 20 76O O12 C13 SING N N 21 76O C16 C15 SING N N 22 76O O34 C33 SING N N 23 76O C33 C31 SING N N 24 76O C15 N23 SING N N 25 76O C15 C14 SING N N 26 76O C13 C31 SING N N 27 76O C13 C14 SING N N 28 76O C31 O32 SING N N 29 76O N23 C24 SING N N 30 76O C24 C25 SING N N 31 76O C30 C25 DOUB Y N 32 76O C30 C29 SING Y N 33 76O C25 C26 SING Y N 34 76O C29 C28 DOUB Y N 35 76O C26 C27 DOUB Y N 36 76O C28 C27 SING Y N 37 76O C8 H49 SING N N 38 76O C11 H35 SING N N 39 76O C13 H36 SING N N 40 76O C14 H51 SING N N 41 76O C14 H50 SING N N 42 76O C15 H37 SING N N 43 76O C16 H52 SING N N 44 76O C16 H53 SING N N 45 76O C24 H56 SING N N 46 76O C24 H57 SING N N 47 76O C26 H58 SING N N 48 76O C27 H59 SING N N 49 76O C28 H60 SING N N 50 76O C31 H44 SING N N 51 76O N1 H47 SING N N 52 76O N1 H46 SING N N 53 76O C4 H48 SING N N 54 76O C17 H54 SING N N 55 76O C17 H55 SING N N 56 76O C18 H38 SING N N 57 76O N19 H39 SING N N 58 76O N19 H41 SING N N 59 76O N19 H40 SING N N 60 76O O21 H1 SING N N 61 76O N23 H43 SING N N 62 76O N23 H42 SING N N 63 76O C29 H61 SING N N 64 76O C30 H62 SING N N 65 76O O32 H63 SING N N 66 76O C33 H45 SING N N 67 76O O34 H64 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 76O InChI InChI 1.03 "InChI=1S/C22H29N7O5/c23-14(22(32)33)7-6-13(25-9-12-4-2-1-3-5-12)8-15-17(30)18(31)21(34-15)29-11-28-16-19(24)26-10-27-20(16)29/h1-5,10-11,13-15,17-18,21,25,30-31H,6-9,23H2,(H,32,33)(H2,24,26,27)/p+2/t13-,14+,15-,17-,18-,21-/m1/s1" 76O InChIKey InChI 1.03 FIOIMCLLFNYJFV-ZGTZEGHKSA-P 76O SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](C[C@@H](CC[C@H]([NH3+])C(O)=O)[NH2+]Cc4ccccc4)[C@@H](O)[C@H]3O" 76O SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](C[CH](CC[CH]([NH3+])C(O)=O)[NH2+]Cc4ccccc4)[CH](O)[CH]3O" 76O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1ccc(cc1)C[NH2+][C@H](CC[C@@H](C(=O)O)[NH3+])C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" 76O SMILES "OpenEye OEToolkits" 2.0.5 "c1ccc(cc1)C[NH2+]C(CCC(C(=O)O)[NH3+])CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 76O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[(2~{R},5~{S})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-(phenylmethyl)azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 76O "Create component" 2016-09-06 EBI 76O "Initial release" 2016-10-05 RCSB #