data_77E # _chem_comp.id 77E _chem_comp.name "(4R)-4-amino-6-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}hexanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H21 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-09-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 77E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5T4L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 77E O7 O1 O 0 1 N N N N N N -38.125 -23.374 11.102 -3.303 -3.194 -1.565 O7 77E 1 77E P1 P1 P 0 1 N N N N N N -37.752 -22.265 10.116 -3.179 -2.812 -0.006 P1 77E 2 77E O5 O2 O 0 1 N N N N N N -36.504 -21.523 10.629 -4.538 -3.217 0.756 O5 77E 3 77E O6 O3 O 0 1 N N N N N N -38.897 -21.313 9.905 -2.041 -3.546 0.592 O6 77E 4 77E O4 O4 O 0 1 N N N N N N -37.489 -22.863 8.657 -2.933 -1.228 0.141 O4 77E 5 77E C17 C1 C 0 1 N N N N N N -36.761 -24.035 8.594 -1.755 -0.575 -0.338 C17 77E 6 77E C16 C2 C 0 1 Y N N N N N -36.566 -24.533 7.204 -1.842 0.900 -0.043 C16 77E 7 77E C15 C3 C 0 1 Y N N N N N -37.365 -25.573 6.752 -2.950 1.420 0.601 C15 77E 8 77E N3 N1 N 0 1 Y N N N N N -37.215 -26.108 5.558 -3.037 2.709 0.863 N3 77E 9 77E C13 C4 C 0 1 Y N N N N N -36.295 -25.671 4.728 -2.080 3.552 0.528 C13 77E 10 77E C14 C5 C 0 1 N N N N N N -36.172 -26.350 3.359 -2.232 5.017 0.847 C14 77E 11 77E C12 C6 C 0 1 Y N N N N N -35.444 -24.639 5.082 -0.938 3.105 -0.119 C12 77E 12 77E O3 O5 O 0 1 N N N N N N -34.490 -24.202 4.184 0.045 3.978 -0.463 O3 77E 13 77E C11 C7 C 0 1 Y N N N N N -35.568 -24.027 6.369 -0.811 1.750 -0.407 C11 77E 14 77E C5 C8 C 0 1 N N N N N N -34.695 -22.869 6.786 0.413 1.221 -1.109 C5 77E 15 77E C6 C9 C 0 1 N N N N N N -33.229 -23.233 6.675 1.468 0.832 -0.072 C6 77E 16 77E C7 C10 C 0 1 N N R N N N -32.466 -22.567 7.814 2.711 0.295 -0.784 C7 77E 17 77E C8 C11 C 0 1 N N N N N N -30.942 -22.777 7.783 3.715 -0.210 0.254 C8 77E 18 77E C9 C12 C 0 1 N N N N N N -30.315 -22.560 9.212 4.903 -0.860 -0.460 C9 77E 19 77E C10 C13 C 0 1 N N N N N N -30.478 -23.792 10.074 5.892 -1.357 0.562 C10 77E 20 77E O2 O6 O 0 1 N N N N N N -30.426 -24.926 9.507 5.670 -1.208 1.740 O2 77E 21 77E O1 O7 O 0 1 N N N N N N -30.682 -23.698 11.282 7.020 -1.967 0.163 O1 77E 22 77E N2 N2 N 0 1 N N N N N N -33.025 -22.957 9.035 3.324 1.370 -1.576 N2 77E 23 77E H1 H1 H 0 1 N N N N N N -39.019 -23.249 11.397 -4.029 -2.748 -2.022 H1 77E 24 77E H2 H2 H 0 1 N N N N N N -36.698 -20.597 10.715 -4.750 -4.159 0.709 H2 77E 25 77E H3 H3 H 0 1 N N N N N N -37.292 -24.807 9.170 -0.880 -0.994 0.160 H3 77E 26 77E H4 H4 H 0 1 N N N N N N -35.773 -23.857 9.043 -1.668 -0.726 -1.414 H4 77E 27 77E H5 H5 H 0 1 N N N N N N -38.137 -25.957 7.402 -3.755 0.761 0.892 H5 77E 28 77E H6 H6 H 0 1 N N N N N N -36.922 -27.151 3.278 -2.725 5.521 0.015 H6 77E 29 77E H7 H7 H 0 1 N N N N N N -36.341 -25.608 2.565 -2.833 5.132 1.749 H7 77E 30 77E H8 H8 H 0 1 N N N N N N -35.165 -26.779 3.252 -1.248 5.458 1.007 H8 77E 31 77E H9 H9 H 0 1 N N N N N N -33.989 -23.494 4.573 0.721 4.098 0.218 H9 77E 32 77E H10 H10 H 0 1 N N N N N N -34.903 -22.008 6.134 0.144 0.346 -1.700 H10 77E 33 77E H11 H11 H 0 1 N N N N N N -34.923 -22.603 7.829 0.817 1.992 -1.766 H11 77E 34 77E H12 H12 H 0 1 N N N N N N -33.114 -24.325 6.742 1.737 1.707 0.519 H12 77E 35 77E H13 H13 H 0 1 N N N N N N -32.833 -22.881 5.711 1.064 0.061 0.585 H13 77E 36 77E H14 H14 H 0 1 N N N N N N -32.627 -21.485 7.701 2.426 -0.525 -1.443 H14 77E 37 77E H15 H15 H 0 1 N N N N N N -30.727 -23.802 7.447 4.067 0.627 0.856 H15 77E 38 77E H16 H16 H 0 1 N N N N N N -30.494 -22.059 7.080 3.233 -0.945 0.899 H16 77E 39 77E H17 H17 H 0 1 N N N N N N -29.243 -22.337 9.103 4.551 -1.697 -1.063 H17 77E 40 77E H18 H18 H 0 1 N N N N N N -30.818 -21.712 9.700 5.385 -0.125 -1.105 H18 77E 41 77E H19 H19 H 0 1 N N N N N N -30.781 -24.566 11.655 7.624 -2.269 0.856 H19 77E 42 77E H20 H20 H 0 1 N N N N N N -32.526 -22.522 9.785 3.596 2.142 -0.987 H20 77E 43 77E H21 H21 H 0 1 N N N N N N -33.985 -22.678 9.066 4.109 1.025 -2.107 H21 77E 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 77E C14 C13 SING N N 1 77E O3 C12 SING N N 2 77E C13 C12 DOUB Y N 3 77E C13 N3 SING Y N 4 77E C12 C11 SING Y N 5 77E N3 C15 DOUB Y N 6 77E C11 C5 SING N N 7 77E C11 C16 DOUB Y N 8 77E C6 C5 SING N N 9 77E C6 C7 SING N N 10 77E C15 C16 SING Y N 11 77E C16 C17 SING N N 12 77E C8 C7 SING N N 13 77E C8 C9 SING N N 14 77E C7 N2 SING N N 15 77E C17 O4 SING N N 16 77E O4 P1 SING N N 17 77E C9 C10 SING N N 18 77E O2 C10 DOUB N N 19 77E O6 P1 DOUB N N 20 77E C10 O1 SING N N 21 77E P1 O5 SING N N 22 77E P1 O7 SING N N 23 77E O7 H1 SING N N 24 77E O5 H2 SING N N 25 77E C17 H3 SING N N 26 77E C17 H4 SING N N 27 77E C15 H5 SING N N 28 77E C14 H6 SING N N 29 77E C14 H7 SING N N 30 77E C14 H8 SING N N 31 77E O3 H9 SING N N 32 77E C5 H10 SING N N 33 77E C5 H11 SING N N 34 77E C6 H12 SING N N 35 77E C6 H13 SING N N 36 77E C7 H14 SING N N 37 77E C8 H15 SING N N 38 77E C8 H16 SING N N 39 77E C9 H17 SING N N 40 77E C9 H18 SING N N 41 77E O1 H19 SING N N 42 77E N2 H20 SING N N 43 77E N2 H21 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 77E SMILES ACDLabs 12.01 "OP(O)(=O)OCc1cnc(c(c1CCC(N)CCC(O)=O)O)C" 77E InChI InChI 1.03 "InChI=1S/C13H21N2O7P/c1-8-13(18)11(4-2-10(14)3-5-12(16)17)9(6-15-8)7-22-23(19,20)21/h6,10,18H,2-5,7,14H2,1H3,(H,16,17)(H2,19,20,21)/t10-/m1/s1" 77E InChIKey InChI 1.03 CFDRNBOOPNTUHH-SNVBAGLBSA-N 77E SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CC[C@@H](N)CCC(O)=O)c1O" 77E SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CC[CH](N)CCC(O)=O)c1O" 77E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)COP(=O)(O)O)CC[C@H](CCC(=O)O)N)O" 77E SMILES "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)COP(=O)(O)O)CCC(CCC(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 77E "SYSTEMATIC NAME" ACDLabs 12.01 "(4R)-4-amino-6-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}hexanoic acid" 77E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(4~{R})-4-azanyl-6-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 77E "Create component" 2016-09-08 RCSB 77E "Initial release" 2017-03-29 RCSB 77E "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 77E _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #