data_780 # _chem_comp.id 780 _chem_comp.name "3-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_7806 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 328.367 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 780 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O39 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 780 C1 C1 C 0 1 Y N N N N N 44.274 -3.025 25.901 4.759 0.493 -0.071 C1 780 1 780 C2 C2 C 0 1 Y N N N N N 44.705 -1.671 25.998 4.966 -0.750 -0.682 C2 780 2 780 C3 C3 C 0 1 Y N N N N N 44.655 -0.929 27.186 3.926 -1.616 -0.861 C3 780 3 780 C4 C4 C 0 1 Y N N N N N 44.165 -1.568 28.282 2.648 -1.270 -0.436 C4 780 4 780 C5 C5 C 0 1 Y N N N N N 43.743 -2.833 28.254 2.422 -0.025 0.181 C5 780 5 780 C6 C6 C 0 1 Y N N N N N 43.771 -3.616 27.095 3.489 0.854 0.366 C6 780 6 780 C7 C7 C 0 1 N N N N N N 44.349 -3.730 24.664 5.894 1.420 0.115 C7 780 7 780 N1 N1 N 0 1 N N N N N N 44.034 -5.009 24.582 5.699 2.603 0.697 N1 780 8 780 N2 N2 N 1 1 N N N N N N 44.739 -3.074 23.599 7.112 1.074 -0.298 N2 780 9 780 N3 N3 N 0 1 Y N N N N N 43.995 -1.136 29.488 1.426 -1.909 -0.473 N3 780 10 780 N4 N4 N 0 1 Y N N N N N 43.295 -3.238 29.433 1.101 0.037 0.485 N4 780 11 780 C8 C8 C 0 1 Y N N N N N 43.487 -2.131 30.134 0.511 -1.069 0.102 C8 780 12 780 "C1'" "C1'" C 0 1 Y N N N N N 43.251 -2.068 31.533 -0.928 -1.364 0.267 "C1'" 780 13 780 "C2'" "C2'" C 0 1 Y N N N N N 42.899 -3.218 32.242 -1.342 -2.646 0.636 "C2'" 780 14 780 "C3'" "C3'" C 0 1 Y N N N N N 42.665 -3.181 33.607 -2.685 -2.923 0.789 "C3'" 780 15 780 "C4'" "C4'" C 0 1 Y N N N N N 42.771 -2.006 34.310 -3.631 -1.937 0.580 "C4'" 780 16 780 "C5'" "C5'" C 0 1 Y N N N N N 43.118 -0.812 33.687 -3.236 -0.653 0.213 "C5'" 780 17 780 "C6'" "C6'" C 0 1 Y N N N N N 43.356 -0.854 32.284 -1.879 -0.360 0.059 "C6'" 780 18 780 "O6'" "O6'" O -1 1 N N N N N N 43.696 0.317 31.622 -1.486 0.889 -0.299 "O6'" 780 19 780 C1B "C1''" C 0 1 Y N N N N N 43.217 0.359 34.467 -4.255 0.403 -0.011 C1B 780 20 780 C2B "C2''" C 0 1 Y N N N N N 44.394 1.126 34.549 -5.349 0.155 -0.838 C2B 780 21 780 C3B "C3''" C 0 1 Y N N N N N 44.471 2.286 35.331 -6.293 1.141 -1.042 C3B 780 22 780 C4B "C4''" C 0 1 Y N N N N N 43.365 2.709 36.056 -6.155 2.373 -0.428 C4B 780 23 780 C5B "C5''" C 0 1 Y N N N N N 42.191 1.969 35.993 -5.070 2.624 0.393 C5B 780 24 780 C6B "C6''" C 0 1 Y N N N N N 42.123 0.819 35.214 -4.123 1.643 0.610 C6B 780 25 780 HC2 HC2 H 0 1 N N N N N N 45.100 -1.172 25.134 5.956 -1.025 -1.015 HC2 780 26 780 HC3 HC3 H 0 1 N N N N N N 44.984 0.094 27.242 4.096 -2.572 -1.333 HC3 780 27 780 HC6 HC6 H 0 1 N N N N N N 43.421 -4.639 27.110 3.330 1.810 0.843 HC6 780 28 780 HH11 HH11 H 0 0 N N N N N N 43.769 -5.482 25.435 4.812 2.855 0.997 HH11 780 29 780 HH12 HH12 H 0 0 N N N N N N 44.051 -5.570 23.762 6.445 3.212 0.819 HH12 780 30 780 HH21 HH21 H 0 0 N N N N N N 44.963 -2.092 23.670 7.857 1.683 -0.175 HH21 780 31 780 HH22 HH22 H 0 0 N N N N N N 44.846 -3.499 22.706 7.255 0.211 -0.717 HH22 780 32 780 HN3 HN3 H 0 1 N N N N N N 44.175 -0.255 29.903 1.249 -2.790 -0.838 HN3 780 33 780 "HC2'" "HC2'" H 0 0 N N N N N N 42.806 -4.162 31.724 -0.609 -3.422 0.801 "HC2'" 780 34 780 "HC3'" "HC3'" H 0 0 N N N N N N 42.394 -4.087 34.128 -2.999 -3.916 1.075 "HC3'" 780 35 780 "HC4'" "HC4'" H 0 0 N N N N N N 42.578 -2.020 35.374 -4.680 -2.163 0.703 "HC4'" 780 36 780 H2B "H2''" H 0 1 N N N N N N 45.265 0.811 33.993 -5.457 -0.806 -1.318 H2B 780 37 780 H3B "H3''" H 0 1 N N N N N N 45.387 2.854 35.377 -7.141 0.950 -1.682 H3B 780 38 780 H4B "H4''" H 0 1 N N N N N N 43.415 3.602 36.662 -6.896 3.141 -0.591 H4B 780 39 780 H5B "H5''" H 0 1 N N N N N N 41.321 2.285 36.551 -4.967 3.588 0.869 H5B 780 40 780 H6B "H6''" H 0 1 N N N N N N 41.195 0.264 35.189 -3.277 1.841 1.252 H6B 780 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 780 C1 C2 DOUB Y N 1 780 C1 C6 SING Y N 2 780 C1 C7 SING N N 3 780 C2 C3 SING Y N 4 780 C2 HC2 SING N N 5 780 C3 C4 DOUB Y N 6 780 C3 HC3 SING N N 7 780 C4 C5 SING Y N 8 780 C4 N3 SING Y N 9 780 C5 C6 DOUB Y N 10 780 C5 N4 SING Y N 11 780 C6 HC6 SING N N 12 780 C7 N1 SING N N 13 780 C7 N2 DOUB N N 14 780 N1 HH11 SING N N 15 780 N1 HH12 SING N N 16 780 N2 HH21 SING N N 17 780 N2 HH22 SING N N 18 780 N3 C8 SING Y N 19 780 N3 HN3 SING N N 20 780 N4 C8 DOUB Y N 21 780 C8 "C1'" SING Y N 22 780 "C1'" "C2'" DOUB Y N 23 780 "C1'" "C6'" SING Y N 24 780 "C2'" "C3'" SING Y N 25 780 "C2'" "HC2'" SING N N 26 780 "C3'" "C4'" DOUB Y N 27 780 "C3'" "HC3'" SING N N 28 780 "C4'" "C5'" SING Y N 29 780 "C4'" "HC4'" SING N N 30 780 "C5'" "C6'" DOUB Y N 31 780 "C5'" C1B SING Y N 32 780 "C6'" "O6'" SING N N 33 780 C1B C2B DOUB Y N 34 780 C1B C6B SING Y N 35 780 C2B C3B SING Y N 36 780 C2B H2B SING N N 37 780 C3B C4B DOUB Y N 38 780 C3B H3B SING N N 39 780 C4B C5B SING Y N 40 780 C4B H4B SING N N 41 780 C5B C6B DOUB Y N 42 780 C5B H5B SING N N 43 780 C6B H6B SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 780 SMILES ACDLabs 10.04 "[O-]c4c(c1ccccc1)cccc4c3nc2cc(ccc2n3)\C(=[NH2+])N" 780 SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(c3[O-])c4ccccc4" 780 SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(c3[O-])c4ccccc4" 780 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)c2cccc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N" 780 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)c2cccc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N" 780 InChI InChI 1.03 "InChI=1S/C20H16N4O/c21-19(22)13-9-10-16-17(11-13)24-20(23-16)15-8-4-7-14(18(15)25)12-5-2-1-3-6-12/h1-11,25H,(H3,21,22)(H,23,24)" 780 InChIKey InChI 1.03 LMGQGPVCSYOMNS-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 780 "SYSTEMATIC NAME" ACDLabs 10.04 "3-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}biphenyl-2-olate" 780 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-6-phenyl-phenolate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 780 "Create component" 2003-03-14 RCSB 780 "Modify aromatic_flag" 2011-06-04 RCSB 780 "Modify descriptor" 2011-06-04 RCSB 780 "Modify synonyms" 2021-03-01 PDBE 780 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 780 _pdbx_chem_comp_synonyms.name CRA_7806 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 780 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom "O6'" _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #