data_785 # _chem_comp.id 785 _chem_comp.name "2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-4-(TRIFLUOROMETHOXY)BENZENOLATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H11 F3 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_9785 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.269 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 785 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O3N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 785 C1 C1 C 0 1 Y N N N N N 44.396 -3.068 26.053 5.002 0.421 0.046 C1 785 1 785 C2 C2 C 0 1 Y N N N N N 44.825 -1.734 26.168 5.066 -0.859 0.608 C2 785 2 785 C3 C3 C 0 1 Y N N N N N 44.744 -1.053 27.375 3.927 -1.585 0.808 C3 785 3 785 C4 C4 C 0 1 Y N N N N N 44.238 -1.718 28.452 2.691 -1.058 0.454 C4 785 4 785 C5 C5 C 0 1 Y N N N N N 43.811 -2.988 28.401 2.608 0.229 -0.112 C5 785 5 785 C6 C6 C 0 1 Y N N N N N 43.872 -3.712 27.202 3.774 0.969 -0.309 C6 785 6 785 C7 C7 C 0 1 N N N N N N 44.506 -3.734 24.813 6.243 1.196 -0.165 C7 785 7 785 N1 N1 N 0 1 N N N N N N 44.223 -5.017 24.716 6.185 2.415 -0.700 N1 785 8 785 N2 N2 N 1 1 N N N N N N 44.896 -3.068 23.757 7.420 0.676 0.180 N2 785 9 785 N3 N3 N 0 1 Y N N N N N 44.066 -1.335 29.656 1.397 -1.530 0.527 N3 785 10 785 N4 N4 N 0 1 Y N N N N N 43.368 -3.416 29.564 1.296 0.477 -0.353 N4 785 11 785 C8 C8 C 0 1 Y N N N N N 43.558 -2.328 30.315 0.579 -0.555 0.021 C8 785 12 785 "C1'" "C1'" C 0 1 Y N N N N N 43.267 -2.212 31.700 -0.891 -0.651 -0.087 "C1'" 785 13 785 "C2'" "C2'" C 0 1 Y N N N N N 42.840 -3.339 32.444 -1.689 0.459 0.195 "C2'" 785 14 785 "C3'" "C3'" C 0 1 Y N N N N N 42.541 -3.231 33.825 -3.065 0.362 0.091 "C3'" 785 15 785 "O3'" "O3'" O 0 1 N N N N N N 42.086 -4.193 34.446 -3.844 1.443 0.366 "O3'" 785 16 785 C3X "CF3'" C 0 1 N N N N N N 42.833 -5.024 35.348 -5.200 1.035 0.172 C3X 785 17 785 "FV'" "F31'" F 0 1 N N N N N N 41.952 -5.912 35.925 -5.496 -0.023 1.037 "FV'" 785 18 785 "FW'" "F32'" F 0 1 N N N N N N 43.749 -5.789 34.652 -6.053 2.110 0.441 "FW'" 785 19 785 "FX'" "F33'" F 0 1 N N N N N N 43.385 -4.286 36.384 -5.377 0.618 -1.152 "FX'" 785 20 785 "C4'" "C4'" C 0 1 Y N N N N N 42.689 -1.995 34.451 -3.654 -0.836 -0.293 "C4'" 785 21 785 "C5'" "C5'" C 0 1 Y N N N N N 43.112 -0.876 33.726 -2.870 -1.939 -0.573 "C5'" 785 22 785 "C6'" "C6'" C 0 1 Y N N N N N 43.398 -0.957 32.355 -1.490 -1.854 -0.478 "C6'" 785 23 785 "O6'" "O6'" O -1 1 N N N N N N 43.760 0.223 31.691 -0.721 -2.939 -0.755 "O6'" 785 24 785 HC2 HC2 H 0 1 N N N N N N 45.231 -1.206 25.323 6.023 -1.276 0.886 HC2 785 25 785 HC3 HC3 H 0 1 N N N N N N 45.070 -0.030 27.471 3.987 -2.573 1.242 HC3 785 26 785 HC6 HC6 H 0 1 N N N N N N 43.525 -4.735 27.168 3.723 1.959 -0.738 HC6 785 27 785 HH11 HH11 H 0 0 N N N N N N 43.955 -5.520 25.551 5.328 2.794 -0.951 HH11 785 28 785 HH12 HH12 H 0 0 N N N N N N 44.276 -5.558 23.882 6.999 2.923 -0.838 HH12 785 29 785 HH21 HH21 H 0 0 N N N N N N 45.128 -2.086 23.841 8.234 1.184 0.041 HH21 785 30 785 HH22 HH22 H 0 0 N N N N N N 45.024 -3.478 22.862 7.462 -0.210 0.573 HH22 785 31 785 HN3 HN3 H 0 1 N N N N N N 44.267 -0.464 30.057 1.118 -2.392 0.873 HN3 785 32 785 "HC2'" "HC2'" H 0 0 N N N N N N 42.741 -4.301 31.957 -1.233 1.391 0.493 "HC2'" 785 33 785 "HC4'" "HC4'" H 0 0 N N N N N N 42.477 -1.898 35.508 -4.728 -0.906 -0.372 "HC4'" 785 34 785 "HC5'" "HC5'" H 0 0 N N N N N N 43.217 0.074 34.236 -3.334 -2.867 -0.871 "HC5'" 785 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 785 C1 C2 DOUB Y N 1 785 C1 C6 SING Y N 2 785 C1 C7 SING N N 3 785 C2 C3 SING Y N 4 785 C2 HC2 SING N N 5 785 C3 C4 DOUB Y N 6 785 C3 HC3 SING N N 7 785 C4 C5 SING Y N 8 785 C4 N3 SING Y N 9 785 C5 C6 DOUB Y N 10 785 C5 N4 SING Y N 11 785 C6 HC6 SING N N 12 785 C7 N1 SING N N 13 785 C7 N2 DOUB N N 14 785 N1 HH11 SING N N 15 785 N1 HH12 SING N N 16 785 N2 HH21 SING N N 17 785 N2 HH22 SING N N 18 785 N3 C8 SING Y N 19 785 N3 HN3 SING N N 20 785 N4 C8 DOUB Y N 21 785 C8 "C1'" SING Y N 22 785 "C1'" "C2'" DOUB Y N 23 785 "C1'" "C6'" SING Y N 24 785 "C2'" "C3'" SING Y N 25 785 "C2'" "HC2'" SING N N 26 785 "C3'" "O3'" SING N N 27 785 "C3'" "C4'" DOUB Y N 28 785 "O3'" C3X SING N N 29 785 C3X "FV'" SING N N 30 785 C3X "FW'" SING N N 31 785 C3X "FX'" SING N N 32 785 "C4'" "C5'" SING Y N 33 785 "C4'" "HC4'" SING N N 34 785 "C5'" "C6'" DOUB Y N 35 785 "C5'" "HC5'" SING N N 36 785 "C6'" "O6'" SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 785 SMILES ACDLabs 10.04 "FC(F)(F)Oc3cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c([O-])cc3" 785 SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(OC(F)(F)F)ccc3[O-]" 785 SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(OC(F)(F)F)ccc3[O-]" 785 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)nc([nH]2)c3cc(ccc3[O-])OC(F)(F)F" 785 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)nc([nH]2)c3cc(ccc3[O-])OC(F)(F)F" 785 InChI InChI 1.03 "InChI=1S/C15H11F3N4O2/c16-15(17,18)24-8-2-4-12(23)9(6-8)14-21-10-3-1-7(13(19)20)5-11(10)22-14/h1-6,23H,(H3,19,20)(H,21,22)" 785 InChIKey InChI 1.03 PJUALJXOBAXGBO-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 785 "SYSTEMATIC NAME" ACDLabs 10.04 "2-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-4-(trifluoromethoxy)phenolate" 785 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-4-(trifluoromethoxy)phenolate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 785 "Create component" 2003-03-14 RCSB 785 "Modify aromatic_flag" 2011-06-04 RCSB 785 "Modify descriptor" 2011-06-04 RCSB 785 "Modify synonyms" 2021-03-01 PDBE 785 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 785 _pdbx_chem_comp_synonyms.name CRA_9785 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 785 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom "O6'" _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #