data_78G # _chem_comp.id 78G _chem_comp.name "2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]-[(3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]azanium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H33 N10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2016-09-12 _chem_comp.pdbx_modified_date 2017-09-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 549.560 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 78G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LV5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 78G N4 N1 N 0 1 Y N N 18.504 -8.287 -3.077 5.470 -1.380 1.929 N4 78G 1 78G C19 C1 C 0 1 N N S 20.379 -12.300 6.075 -3.500 3.690 0.720 C19 78G 2 78G C21 C2 C 0 1 N N N 21.211 -8.569 1.898 0.190 -0.262 -1.139 C21 78G 3 78G C22 C3 C 0 1 N N N 21.121 -8.898 3.368 -0.493 0.746 -0.212 C22 78G 4 78G O6 O1 O 0 1 N N N 22.542 -13.303 6.357 -2.426 5.818 0.077 O6 78G 5 78G C20 C4 C 0 1 N N N 21.405 -13.044 6.948 -3.480 4.995 -0.034 C20 78G 6 78G N5 N2 N 1 1 N N N 22.284 -9.730 3.843 -1.883 0.333 0.021 N5 78G 7 78G O7 O2 O 0 1 N N N 21.127 -13.408 8.062 -4.414 5.300 -0.738 O7 78G 8 78G C1 C5 C 0 1 Y N N 16.915 -9.968 -4.161 7.902 -0.660 1.693 C1 78G 9 78G C10 C6 C 0 1 N N N 23.112 -8.959 4.822 -1.900 -0.932 0.768 C10 78G 10 78G C11 C7 C 0 1 N N N 23.871 -7.850 4.170 -3.321 -1.418 0.900 C11 78G 11 78G C12 C8 C 0 1 N N N 24.914 -8.041 3.178 -4.145 -0.946 1.942 C12 78G 12 78G C13 C9 C 0 1 N N N 25.454 -5.754 3.179 -5.878 -2.261 1.161 C13 78G 13 78G C14 C10 C 0 1 N N N 23.664 -6.571 4.552 -3.826 -2.311 0.016 C14 78G 14 78G C15 C11 C 0 1 N N N 23.981 -4.172 4.466 -5.673 -3.700 -0.790 C15 78G 15 78G C16 C12 C 0 1 N N N 25.127 -2.670 5.870 -5.886 -2.341 -2.752 C16 78G 16 78G C17 C13 C 0 1 N N N 21.857 -11.070 4.385 -2.579 1.369 0.795 C17 78G 17 78G C18 C14 C 0 1 N N N 20.916 -10.951 5.571 -2.662 2.654 -0.031 C18 78G 18 78G C2 C15 C 0 1 Y N N 17.968 -9.540 -3.332 6.535 -0.747 1.380 C2 78G 19 78G C3 C16 C 0 1 Y N N 18.608 -10.511 -2.574 6.067 -0.051 0.252 C3 78G 20 78G C4 C17 C 0 1 Y N N 17.289 -12.098 -3.337 8.199 0.711 -0.140 C4 78G 21 78G C5 C18 C 0 1 Y N N 19.452 -8.527 -2.204 4.405 -1.123 1.227 C5 78G 22 78G C6 C19 C 0 1 N N R 20.517 -10.440 -0.923 3.794 0.203 -0.831 C6 78G 23 78G C7 C20 C 0 1 N N R 21.310 -9.901 1.196 1.594 0.236 -1.488 C7 78G 24 78G C8 C21 C 0 1 N N S 22.535 -10.073 0.304 2.271 -0.722 -2.492 C8 78G 25 78G C9 C22 C 0 1 N N R 21.963 -9.986 -1.112 3.751 -0.745 -2.050 C9 78G 26 78G N1 N3 N 0 1 Y N N 18.316 -11.816 -2.527 6.927 0.658 -0.472 N1 78G 27 78G N10 N4 N 0 1 N N N 19.171 -12.009 6.873 -4.885 3.211 0.833 N10 78G 28 78G N2 N5 N 0 1 Y N N 16.594 -11.274 -4.135 8.686 0.075 0.910 N2 78G 29 78G N3 N6 N 0 1 Y N N 19.572 -9.849 -1.855 4.721 -0.307 0.182 N3 78G 30 78G N6 N7 N 0 1 N N N 16.272 -9.160 -5.014 8.421 -1.323 2.791 N6 78G 31 78G N7 N8 N 0 1 N N N 25.664 -7.027 2.733 -5.395 -1.382 2.038 N7 78G 32 78G N8 N9 N 0 1 N N N 24.402 -5.525 4.065 -5.114 -2.734 0.159 N8 78G 33 78G N9 N10 N 0 1 N N N 25.116 -9.255 2.654 -3.657 -0.039 2.853 N9 78G 34 78G O1 O3 O 0 1 N N N 20.136 -10.043 0.373 2.443 0.207 -0.320 O1 78G 35 78G O2 O4 O 0 1 N N N 22.632 -10.941 -1.915 4.593 -0.255 -3.096 O2 78G 36 78G O3 O5 O 0 1 N N N 23.188 -11.316 0.565 2.153 -0.217 -3.824 O3 78G 37 78G O4 O6 O 0 1 N N N 24.360 -3.853 5.777 -6.554 -3.027 -1.691 O4 78G 38 78G O5 O7 O 0 1 N N N 26.227 -4.832 2.921 -7.031 -2.643 1.268 O5 78G 39 78G H25 H1 H 0 1 N N N 20.116 -12.929 5.212 -3.086 3.840 1.717 H25 78G 40 78G H29 H2 H 0 1 N N N 22.103 -7.959 1.694 0.262 -1.227 -0.637 H29 78G 41 78G H30 H3 H 0 1 N N N 20.313 -8.026 1.569 -0.395 -0.370 -2.052 H30 78G 42 78G H32 H4 H 0 1 N N N 21.102 -7.958 3.940 0.039 0.783 0.739 H32 78G 43 78G H31 H5 H 0 1 N N N 20.190 -9.456 3.549 -0.479 1.732 -0.674 H31 78G 44 78G H28 H6 H 0 1 N N N 23.094 -13.812 6.940 -2.459 6.643 -0.426 H28 78G 45 78G H10 H8 H 0 1 N N N 22.448 -8.531 5.588 -1.309 -1.677 0.236 H10 78G 46 78G H9 H9 H 0 1 N N N 23.827 -9.645 5.299 -1.477 -0.773 1.760 H9 78G 47 78G H13 H10 H 0 1 N N N 22.885 -6.365 5.271 -3.216 -2.684 -0.793 H13 78G 48 78G H16 H11 H 0 1 N N N 24.439 -3.444 3.780 -4.864 -4.167 -1.352 H16 78G 49 78G H17 H12 H 0 1 N N N 22.885 -4.108 4.391 -6.226 -4.466 -0.246 H17 78G 50 78G H20 H13 H 0 1 N N N 25.387 -2.483 6.922 -5.308 -3.054 -3.340 H20 78G 51 78G H19 H14 H 0 1 N N N 26.048 -2.783 5.279 -6.623 -1.855 -3.392 H19 78G 52 78G H18 H15 H 0 1 N N N 24.543 -1.823 5.481 -5.217 -1.588 -2.334 H18 78G 53 78G H22 H16 H 0 1 N N N 21.346 -11.626 3.585 -3.585 1.027 1.038 H22 78G 54 78G H21 H17 H 0 1 N N N 22.754 -11.623 4.702 -2.030 1.564 1.717 H21 78G 55 78G H23 H18 H 0 1 N N N 21.457 -10.463 6.395 -3.126 2.438 -0.993 H23 78G 56 78G H24 H19 H 0 1 N N N 20.061 -10.327 5.274 -1.658 3.047 -0.192 H24 78G 57 78G H1 H20 H 0 1 N N N 16.977 -13.132 -3.350 8.871 1.297 -0.750 H1 78G 58 78G H2 H21 H 0 1 N N N 20.083 -7.752 -1.795 3.416 -1.500 1.442 H2 78G 59 78G H3 H22 H 0 1 N N N 20.481 -11.536 -1.009 4.085 1.206 -1.141 H3 78G 60 78G H4 H23 H 0 1 N N N 21.322 -10.696 1.956 1.546 1.245 -1.899 H4 78G 61 78G H5 H24 H 0 1 N N N 23.224 -9.231 0.468 1.834 -1.719 -2.423 H5 78G 62 78G H6 H25 H 0 1 N N N 22.019 -8.962 -1.510 4.048 -1.753 -1.761 H6 78G 63 78G H26 H26 H 0 1 N N N 18.787 -12.864 7.222 -5.444 3.847 1.381 H26 78G 64 78G H27 H27 H 0 1 N N N 19.413 -11.415 7.640 -5.292 3.064 -0.079 H27 78G 65 78G H12 H29 H 0 1 N N N 15.605 -9.690 -5.537 9.366 -1.255 2.997 H12 78G 66 78G H11 H30 H 0 1 N N N 15.800 -8.443 -4.502 7.839 -1.856 3.355 H11 78G 67 78G H14 H31 H 0 1 N N N 25.813 -9.386 1.949 -2.743 0.278 2.781 H14 78G 68 78G H15 H32 H 0 1 N N N 24.570 -10.032 2.967 -4.227 0.284 3.569 H15 78G 69 78G H7 H33 H 0 1 N N N 23.534 -10.672 -2.042 4.604 -0.812 -3.886 H7 78G 70 78G H8 H34 H 0 1 N N N 23.523 -11.318 1.454 2.561 -0.780 -4.496 H8 78G 71 78G H33 H35 H 0 1 N N N 22.861 -9.908 3.046 -2.349 0.206 -0.865 H33 78G 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 78G N6 C1 SING N N 1 78G C1 N2 DOUB Y N 2 78G C1 C2 SING Y N 3 78G N2 C4 SING Y N 4 78G C4 N1 DOUB Y N 5 78G C2 N4 SING Y N 6 78G C2 C3 DOUB Y N 7 78G N4 C5 DOUB Y N 8 78G C3 N1 SING Y N 9 78G C3 N3 SING Y N 10 78G C5 N3 SING Y N 11 78G O2 C9 SING N N 12 78G N3 C6 SING N N 13 78G C9 C6 SING N N 14 78G C9 C8 SING N N 15 78G C6 O1 SING N N 16 78G C8 O3 SING N N 17 78G C8 C7 SING N N 18 78G O1 C7 SING N N 19 78G C7 C21 SING N N 20 78G C21 C22 SING N N 21 78G N9 C12 SING N N 22 78G N7 C12 DOUB N N 23 78G N7 C13 SING N N 24 78G O5 C13 DOUB N N 25 78G C12 C11 SING N N 26 78G C13 N8 SING N N 27 78G C22 N5 SING N N 28 78G N5 C17 SING N N 29 78G N5 C10 SING N N 30 78G N8 C15 SING N N 31 78G N8 C14 SING N N 32 78G C11 C14 DOUB N N 33 78G C11 C10 SING N N 34 78G C17 C18 SING N N 35 78G C15 O4 SING N N 36 78G C18 C19 SING N N 37 78G O4 C16 SING N N 38 78G C19 N10 SING N N 39 78G C19 C20 SING N N 40 78G O6 C20 SING N N 41 78G C20 O7 DOUB N N 42 78G C19 H25 SING N N 43 78G C21 H29 SING N N 44 78G C21 H30 SING N N 45 78G C22 H32 SING N N 46 78G C22 H31 SING N N 47 78G O6 H28 SING N N 48 78G C10 H10 SING N N 49 78G C10 H9 SING N N 50 78G C14 H13 SING N N 51 78G C15 H16 SING N N 52 78G C15 H17 SING N N 53 78G C16 H20 SING N N 54 78G C16 H19 SING N N 55 78G C16 H18 SING N N 56 78G C17 H22 SING N N 57 78G C17 H21 SING N N 58 78G C18 H23 SING N N 59 78G C18 H24 SING N N 60 78G C4 H1 SING N N 61 78G C5 H2 SING N N 62 78G C6 H3 SING N N 63 78G C7 H4 SING N N 64 78G C8 H5 SING N N 65 78G C9 H6 SING N N 66 78G N10 H26 SING N N 67 78G N10 H27 SING N N 68 78G N6 H12 SING N N 69 78G N6 H11 SING N N 70 78G N9 H14 SING N N 71 78G N9 H15 SING N N 72 78G O2 H7 SING N N 73 78G O3 H8 SING N N 74 78G N5 H33 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 78G InChI InChI 1.03 "InChI=1S/C22H32N10O7/c1-38-10-31-7-11(17(24)29-22(31)37)6-30(4-2-12(23)21(35)36)5-3-13-15(33)16(34)20(39-13)32-9-28-14-18(25)26-8-27-19(14)32/h7-9,12-13,15-16,20,33-34H,2-6,10,23H2,1H3,(H,35,36)(H2,24,29,37)(H2,25,26,27)/p+1/t12-,13+,15+,16+,20+/m0/s1" 78G InChIKey InChI 1.03 GZMYJIXALPWXCM-WUMBASEESA-O 78G SMILES_CANONICAL CACTVS 3.385 "COCN1C=C(C[NH+](CC[C@H](N)C(O)=O)CC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" 78G SMILES CACTVS 3.385 "COCN1C=C(C[NH+](CC[CH](N)C(O)=O)CC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" 78G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)C[NH+](CC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)CC[C@@H](C(=O)O)N" 78G SMILES "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)C[NH+](CCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)CCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 78G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]-[(3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 78G "Create component" 2016-09-12 EBI 78G "Other modification" 2016-09-17 EBI 78G "Initial release" 2017-09-20 RCSB #