data_78P # _chem_comp.id 78P _chem_comp.name "(2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Veliparib _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-10-09 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 78P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2RD6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 78P C4 C4 C 0 1 Y N N 26.540 65.623 9.392 -1.162 0.181 -0.059 C4 78P 1 78P C5 C5 C 0 1 Y N N 26.938 66.429 10.492 -2.537 -0.058 0.073 C5 78P 2 78P C6 C6 C 0 1 Y N N 28.292 66.356 10.936 -3.415 1.020 0.174 C6 78P 3 78P C8 C8 C 0 1 Y N N 25.567 64.552 7.749 1.032 0.181 -0.276 C8 78P 4 78P C10 C10 C 0 1 N N N 26.013 67.369 11.218 -3.051 -1.441 0.106 C10 78P 5 78P C13 C13 C 0 1 N N R 24.469 64.088 6.773 2.454 -0.298 -0.419 C13 78P 6 78P C15 C15 C 0 1 N N N 22.394 63.670 7.891 4.238 -0.900 1.012 C15 78P 7 78P C17 C17 C 0 1 N N N 24.272 62.577 6.863 3.418 0.903 -0.381 C17 78P 8 78P C1 C1 C 0 1 Y N N 29.227 65.493 10.290 -2.934 2.316 0.143 C1 78P 9 78P C2 C2 C 0 1 Y N N 28.819 64.697 9.193 -1.583 2.564 0.014 C2 78P 10 78P C3 C3 C 0 1 Y N N 27.499 64.753 8.741 -0.683 1.501 -0.089 C3 78P 11 78P N7 N7 N 0 1 Y N N 26.837 64.106 7.718 0.667 1.428 -0.223 N7 78P 12 78P N9 N9 N 0 1 Y N N 25.344 65.447 8.718 -0.057 -0.629 -0.172 N9 78P 13 78P N11 N11 N 0 1 N N N 24.708 67.304 10.913 -4.374 -1.665 0.233 N11 78P 14 78P O12 O12 O 0 1 N N N 26.394 68.187 12.046 -2.281 -2.378 0.017 O12 78P 15 78P N14 N14 N 0 1 N N N 23.157 64.678 7.141 2.808 -1.174 0.719 N14 78P 16 78P C16 C16 C 0 1 N N N 23.248 62.410 7.976 4.351 0.634 0.822 C16 78P 17 78P C18 C18 C 0 1 N N N 24.884 64.550 5.375 2.622 -1.059 -1.735 C18 78P 18 78P H6 H6 H 0 1 N N N 28.613 66.961 11.771 -4.475 0.843 0.275 H6 78P 19 78P H151 H151 H 0 0 N N N 22.169 64.042 8.901 4.481 -1.180 2.037 H151 78P 20 78P H152 H152 H 0 0 N N N 21.441 63.455 7.385 4.885 -1.423 0.308 H152 78P 21 78P H171 H171 H 0 0 N N N 23.903 62.163 5.913 3.996 0.953 -1.304 H171 78P 22 78P H172 H172 H 0 0 N N N 25.210 62.040 7.067 2.863 1.829 -0.230 H172 78P 23 78P H1 H1 H 0 1 N N N 30.248 65.447 10.639 -3.623 3.144 0.221 H1 78P 24 78P H2 H2 H 0 1 N N N 29.529 64.046 8.705 -1.221 3.581 -0.009 H2 78P 25 78P H9 H9 H 0 1 N N N 24.477 65.903 8.918 -0.054 -1.599 -0.184 H9 78P 26 78P H111 H111 H 0 0 N N N 24.229 67.982 11.471 -4.988 -0.917 0.303 H111 78P 27 78P H112 H112 H 0 0 N N N 24.289 66.688 10.246 -4.712 -2.574 0.254 H112 78P 28 78P H141 H141 H 0 0 N N N 23.296 65.490 7.707 2.230 -0.976 1.521 H141 78P 29 78P H161 H161 H 0 0 N N N 22.640 61.505 7.827 3.997 1.159 1.709 H161 78P 30 78P H162 H162 H 0 0 N N N 23.718 62.288 8.963 5.376 0.919 0.586 H162 78P 31 78P H181 H181 H 0 0 N N N 24.984 65.645 5.365 3.647 -1.419 -1.819 H181 78P 32 78P H182 H182 H 0 0 N N N 25.848 64.092 5.109 1.937 -1.907 -1.755 H182 78P 33 78P H183 H183 H 0 0 N N N 24.119 64.245 4.646 2.401 -0.394 -2.570 H183 78P 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 78P C18 C13 SING N N 1 78P C13 C17 SING N N 2 78P C13 N14 SING N N 3 78P C13 C8 SING N N 4 78P C17 C16 SING N N 5 78P N14 C15 SING N N 6 78P N7 C8 DOUB Y N 7 78P N7 C3 SING Y N 8 78P C8 N9 SING Y N 9 78P C15 C16 SING N N 10 78P N9 C4 SING Y N 11 78P C3 C2 DOUB Y N 12 78P C3 C4 SING Y N 13 78P C2 C1 SING Y N 14 78P C4 C5 DOUB Y N 15 78P C1 C6 DOUB Y N 16 78P C5 C6 SING Y N 17 78P C5 C10 SING N N 18 78P N11 C10 SING N N 19 78P C10 O12 DOUB N N 20 78P C6 H6 SING N N 21 78P C15 H151 SING N N 22 78P C15 H152 SING N N 23 78P C17 H171 SING N N 24 78P C17 H172 SING N N 25 78P C1 H1 SING N N 26 78P C2 H2 SING N N 27 78P N9 H9 SING N N 28 78P N11 H111 SING N N 29 78P N11 H112 SING N N 30 78P N14 H141 SING N N 31 78P C16 H161 SING N N 32 78P C16 H162 SING N N 33 78P C18 H181 SING N N 34 78P C18 H182 SING N N 35 78P C18 H183 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 78P SMILES ACDLabs 10.04 "O=C(N)c3c1c(nc(n1)C2(NCCC2)C)ccc3" 78P SMILES_CANONICAL CACTVS 3.341 "C[C@@]1(CCCN1)c2[nH]c3c(cccc3C(N)=O)n2" 78P SMILES CACTVS 3.341 "C[C]1(CCCN1)c2[nH]c3c(cccc3C(N)=O)n2" 78P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@]1(CCCN1)c2[nH]c3c(cccc3n2)C(=O)N" 78P SMILES "OpenEye OEToolkits" 1.5.0 "CC1(CCCN1)c2[nH]c3c(cccc3n2)C(=O)N" 78P InChI InChI 1.03 "InChI=1S/C13H16N4O/c1-13(6-3-7-15-13)12-16-9-5-2-4-8(11(14)18)10(9)17-12/h2,4-5,15H,3,6-7H2,1H3,(H2,14,18)(H,16,17)/t13-/m1/s1" 78P InChIKey InChI 1.03 JNAHVYVRKWKWKQ-CYBMUJFWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 78P "SYSTEMATIC NAME" ACDLabs 10.04 "2-[(2R)-2-methylpyrrolidin-2-yl]-1H-benzimidazole-7-carboxamide" 78P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[(2R)-2-methylpyrrolidin-2-yl]-3H-benzimidazole-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 78P "Create component" 2007-10-09 RCSB 78P "Modify aromatic_flag" 2011-06-04 RCSB 78P "Modify descriptor" 2011-06-04 RCSB 78P "Modify synonyms" 2020-10-27 RCSB 78P "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 78P _pdbx_chem_comp_synonyms.name Veliparib _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##