data_79C # _chem_comp.id 79C _chem_comp.name "4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H35 F2 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-09-15 _chem_comp.pdbx_modified_date 2017-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 543.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 79C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5TA8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 79C C4 C1 C 0 1 Y N N 0.084 21.079 70.063 3.116 -2.528 0.226 C4 79C 1 79C C5 C2 C 0 1 Y N N -1.046 20.800 69.288 3.584 -1.217 0.096 C5 79C 2 79C C6 C3 C 0 1 Y N N -1.504 21.777 68.382 2.690 -0.146 0.186 C6 79C 3 79C C7 C4 C 0 1 Y N N -0.855 22.998 68.254 1.351 -0.383 0.402 C7 79C 4 79C C8 C5 C 0 1 Y N N 0.279 23.272 69.030 0.885 -1.687 0.532 C8 79C 5 79C C10 C6 C 0 1 Y N N 0.922 25.505 68.014 -1.413 -0.991 0.340 C10 79C 6 79C C13 C7 C 0 1 Y N N 0.840 27.568 66.259 -3.215 0.822 -0.451 C13 79C 7 79C C15 C8 C 0 1 N N N 0.708 30.019 66.004 -4.244 2.266 -2.207 C15 79C 8 79C C21 C9 C 0 1 N N N -0.350 26.300 63.698 -5.397 0.341 1.695 C21 79C 9 79C C24 C10 C 0 1 N N N -3.156 25.623 64.251 -5.382 -1.276 -1.744 C24 79C 10 79C C26 C11 C 0 1 N N N -2.513 23.289 63.820 -7.814 -1.347 -1.566 C26 79C 11 79C C28 C12 C 0 1 Y N N -0.023 26.454 66.107 -3.610 -0.308 0.274 C28 79C 12 79C C1 C13 C 0 1 N N N 2.802 21.553 70.974 2.278 -5.084 0.457 C1 79C 13 79C O2 O1 O 0 1 N N N 1.839 22.581 70.703 1.314 -4.035 0.564 O2 79C 14 79C C3 C14 C 0 1 Y N N 0.739 22.300 69.939 1.772 -2.760 0.438 C3 79C 15 79C N9 N1 N 0 1 N N N 1.008 24.477 68.956 -0.472 -1.923 0.752 N9 79C 16 79C N11 N2 N 0 1 Y N N 1.736 26.545 68.174 -1.014 0.057 -0.365 N11 79C 17 79C C12 C15 C 0 1 Y N N 1.720 27.579 67.334 -1.880 0.976 -0.773 C12 79C 18 79C N14 N3 N 0 1 N N N 0.766 28.685 65.391 -4.172 1.776 -0.828 N14 79C 19 79C C16 C16 C 0 1 N N N 0.672 28.611 64.037 -5.025 2.232 0.115 C16 79C 20 79C O17 O2 O 0 1 N N N 0.591 29.637 63.382 -5.908 3.009 -0.182 O17 79C 21 79C C18 C17 C 0 1 N N N 0.719 27.303 63.302 -4.871 1.765 1.538 C18 79C 22 79C F19 F1 F 0 1 N N N 0.526 27.569 61.943 -3.516 1.798 1.885 F19 79C 23 79C F20 F2 F 0 1 N N N 1.979 26.721 63.494 -5.588 2.618 2.384 F20 79C 24 79C N22 N4 N 0 1 N N N -0.932 26.398 65.042 -4.946 -0.504 0.572 N22 79C 25 79C C23 C18 C 0 1 N N N -1.928 25.314 65.149 -5.790 -0.300 -0.613 C23 79C 26 79C C25 C19 C 0 1 N N N -3.739 24.227 63.915 -6.669 -1.363 -2.601 C25 79C 27 79C C27 C20 C 0 1 N N N -1.374 23.975 64.594 -7.255 -0.671 -0.303 C27 79C 28 79C N29 N5 N 0 1 Y N N 0.059 25.462 67.002 -2.686 -1.179 0.659 N29 79C 29 79C C30 C21 C 0 1 N N N -1.725 19.487 69.424 5.019 -0.963 -0.136 C30 79C 30 79C O31 O3 O 0 1 N N N -1.739 18.906 70.492 5.796 -1.895 -0.213 O31 79C 31 79C N32 N6 N 0 1 N N N -2.306 18.924 68.338 5.468 0.301 -0.261 N32 79C 32 79C C33 C22 C 0 1 N N N -3.003 17.632 68.345 6.893 0.553 -0.491 C33 79C 33 79C C34 C23 C 0 1 N N N -4.234 17.763 67.431 7.068 1.902 -1.193 C34 79C 34 79C C35 C24 C 0 1 N N N -4.944 16.419 67.234 8.560 2.187 -1.375 C35 79C 35 79C N36 N7 N 0 1 N N N -3.984 15.434 66.708 9.220 2.208 -0.064 N36 79C 36 79C C37 C25 C 0 1 N N N -4.659 14.165 66.396 10.626 2.615 -0.188 C37 79C 37 79C C38 C26 C 0 1 N N N -2.838 15.224 67.618 9.106 0.908 0.609 C38 79C 38 79C C39 C27 C 0 1 N N N -2.059 16.532 67.834 7.630 0.583 0.851 C39 79C 39 79C H1 H1 H 0 1 N N N 0.451 20.342 70.762 3.805 -3.357 0.156 H1 79C 40 79C H2 H2 H 0 1 N N N -2.375 21.573 67.777 3.049 0.867 0.086 H2 79C 41 79C H3 H3 H 0 1 N N N -1.224 23.736 67.557 0.661 0.445 0.472 H3 79C 42 79C H4 H4 H 0 1 N N N 0.796 29.925 67.096 -4.921 1.634 -2.782 H4 79C 43 79C H5 H5 H 0 1 N N N 1.535 30.635 65.621 -4.613 3.291 -2.210 H5 79C 44 79C H6 H6 H 0 1 N N N -0.251 30.496 65.753 -3.251 2.236 -2.656 H6 79C 45 79C H7 H7 H 0 1 N N N -1.175 26.402 62.978 -5.027 -0.077 2.631 H7 79C 46 79C H8 H8 H 0 1 N N N 0.094 25.298 63.608 -6.486 0.361 1.715 H8 79C 47 79C H9 H9 H 0 1 N N N -2.848 26.148 63.335 -4.557 -0.868 -2.327 H9 79C 48 79C H10 H10 H 0 1 N N N -3.893 26.234 64.793 -5.120 -2.252 -1.335 H10 79C 49 79C H11 H11 H 0 1 N N N -2.745 22.314 64.272 -8.658 -0.776 -1.953 H11 79C 50 79C H12 H12 H 0 1 N N N -2.225 23.146 62.768 -8.125 -2.366 -1.338 H12 79C 51 79C H13 H13 H 0 1 N N N 3.610 21.962 71.598 3.033 -4.965 1.235 H13 79C 52 79C H14 H14 H 0 1 N N N 2.313 20.723 71.505 1.781 -6.047 0.576 H14 79C 53 79C H15 H15 H 0 1 N N N 3.222 21.185 70.026 2.755 -5.040 -0.522 H15 79C 54 79C H16 H16 H 0 1 N N N 1.683 24.615 69.681 -0.757 -2.738 1.192 H16 79C 55 79C H17 H17 H 0 1 N N N 2.384 28.417 67.487 -1.547 1.828 -1.347 H17 79C 56 79C H18 H18 H 0 1 N N N -2.252 25.180 66.192 -5.720 0.732 -0.956 H18 79C 57 79C H19 H19 H 0 1 N N N -4.279 24.255 62.957 -6.744 -0.503 -3.266 H19 79C 58 79C H20 H20 H 0 1 N N N -4.421 23.892 64.711 -6.685 -2.292 -3.172 H20 79C 59 79C H21 H21 H 0 1 N N N -1.043 23.333 65.424 -7.828 0.228 -0.076 H21 79C 60 79C H22 H22 H 0 1 N N N -0.526 24.170 63.921 -7.295 -1.362 0.539 H22 79C 61 79C H23 H23 H 0 1 N N N -2.257 19.422 67.472 4.848 1.044 -0.199 H23 79C 62 79C H24 H24 H 0 1 N N N -3.333 17.383 69.364 7.306 -0.239 -1.116 H24 79C 63 79C H25 H25 H 0 1 N N N -3.910 18.142 66.450 6.581 1.871 -2.168 H25 79C 64 79C H26 H26 H 0 1 N N N -4.939 18.475 67.884 6.618 2.688 -0.586 H26 79C 65 79C H27 H27 H 0 1 N N N -5.772 16.542 66.521 9.006 1.408 -1.993 H27 79C 66 79C H28 H28 H 0 1 N N N -5.340 16.068 68.198 8.688 3.154 -1.862 H28 79C 67 79C H30 H30 H 0 1 N N N -3.925 13.445 66.005 10.678 3.614 -0.621 H30 79C 68 79C H31 H31 H 0 1 N N N -5.119 13.760 67.310 11.091 2.622 0.798 H31 79C 69 79C H32 H32 H 0 1 N N N -5.438 14.341 65.640 11.152 1.912 -0.833 H32 79C 70 79C H33 H33 H 0 1 N N N -3.210 14.863 68.588 9.549 0.134 -0.019 H33 79C 71 79C H34 H34 H 0 1 N N N -2.164 14.472 67.181 9.631 0.945 1.564 H34 79C 72 79C H35 H35 H 0 1 N N N -1.263 16.363 68.574 7.189 1.348 1.490 H35 79C 73 79C H36 H36 H 0 1 N N N -1.612 16.851 66.881 7.547 -0.390 1.336 H36 79C 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 79C F19 C18 SING N N 1 79C C18 F20 SING N N 2 79C C18 C21 SING N N 3 79C C18 C16 SING N N 4 79C O17 C16 DOUB N N 5 79C C21 N22 SING N N 6 79C C26 C25 SING N N 7 79C C26 C27 SING N N 8 79C C25 C24 SING N N 9 79C C16 N14 SING N N 10 79C C24 C23 SING N N 11 79C C27 C23 SING N N 12 79C N22 C23 SING N N 13 79C N22 C28 SING N N 14 79C N14 C15 SING N N 15 79C N14 C13 SING N N 16 79C C28 C13 DOUB Y N 17 79C C28 N29 SING Y N 18 79C C13 C12 SING Y N 19 79C C37 N36 SING N N 20 79C N36 C35 SING N N 21 79C N36 C38 SING N N 22 79C N29 C10 DOUB Y N 23 79C C35 C34 SING N N 24 79C C12 N11 DOUB Y N 25 79C C34 C33 SING N N 26 79C C38 C39 SING N N 27 79C C39 C33 SING N N 28 79C C10 N11 SING Y N 29 79C C10 N9 SING N N 30 79C C7 C6 DOUB Y N 31 79C C7 C8 SING Y N 32 79C N32 C33 SING N N 33 79C N32 C30 SING N N 34 79C C6 C5 SING Y N 35 79C N9 C8 SING N N 36 79C C8 C3 DOUB Y N 37 79C C5 C30 SING N N 38 79C C5 C4 DOUB Y N 39 79C C30 O31 DOUB N N 40 79C C3 C4 SING Y N 41 79C C3 O2 SING N N 42 79C O2 C1 SING N N 43 79C C4 H1 SING N N 44 79C C6 H2 SING N N 45 79C C7 H3 SING N N 46 79C C15 H4 SING N N 47 79C C15 H5 SING N N 48 79C C15 H6 SING N N 49 79C C21 H7 SING N N 50 79C C21 H8 SING N N 51 79C C24 H9 SING N N 52 79C C24 H10 SING N N 53 79C C26 H11 SING N N 54 79C C26 H12 SING N N 55 79C C1 H13 SING N N 56 79C C1 H14 SING N N 57 79C C1 H15 SING N N 58 79C N9 H16 SING N N 59 79C C12 H17 SING N N 60 79C C23 H18 SING N N 61 79C C25 H19 SING N N 62 79C C25 H20 SING N N 63 79C C27 H21 SING N N 64 79C C27 H22 SING N N 65 79C N32 H23 SING N N 66 79C C33 H24 SING N N 67 79C C34 H25 SING N N 68 79C C34 H26 SING N N 69 79C C35 H27 SING N N 70 79C C35 H28 SING N N 71 79C C37 H30 SING N N 72 79C C37 H31 SING N N 73 79C C37 H32 SING N N 74 79C C38 H33 SING N N 75 79C C38 H34 SING N N 76 79C C39 H35 SING N N 77 79C C39 H36 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 79C SMILES ACDLabs 12.01 "c2c(C(=O)NC1CCN(CC1)C)ccc(c2OC)Nc3ncc4c(n3)N(CC(C(N4C)=O)(F)F)C5CCCC5" 79C InChI InChI 1.03 "InChI=1S/C27H35F2N7O3/c1-34-12-10-18(11-13-34)31-24(37)17-8-9-20(22(14-17)39-3)32-26-30-15-21-23(33-26)36(19-6-4-5-7-19)16-27(28,29)25(38)35(21)2/h8-9,14-15,18-19H,4-7,10-13,16H2,1-3H3,(H,31,37)(H,30,32,33)" 79C InChIKey InChI 1.03 DJNZZLZKAXGMMC-UHFFFAOYSA-N 79C SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)C(F)(F)CN(C4CCCC4)c3n2)C(=O)NC5CCN(C)CC5" 79C SMILES CACTVS 3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)C(F)(F)CN(C4CCCC4)c3n2)C(=O)NC5CCN(C)CC5" 79C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CCC(CC1)NC(=O)c2ccc(c(c2)OC)Nc3ncc4c(n3)N(CC(C(=O)N4C)(F)F)C5CCCC5" 79C SMILES "OpenEye OEToolkits" 2.0.6 "CN1CCC(CC1)NC(=O)c2ccc(c(c2)OC)Nc3ncc4c(n3)N(CC(C(=O)N4C)(F)F)C5CCCC5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 79C "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide" 79C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[[9-cyclopentyl-7,7-bis(fluoranyl)-5-methyl-6-oxidanylidene-8~{H}-pyrimido[4,5-b][1,4]diazepin-2-yl]amino]-3-methoxy-~{N}-(1-methylpiperidin-4-yl)benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 79C "Create component" 2016-09-15 RCSB 79C "Initial release" 2017-02-22 RCSB ##