data_7DA # _chem_comp.id 7DA _chem_comp.name "7-DEAZA-2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H15 N4 O6 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 330.234 _chem_comp.one_letter_code A _chem_comp.three_letter_code 7DA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1U1K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7DA P P P 0 1 N N N -7.816 1.830 -71.952 1.592 -1.245 -4.964 P 7DA 1 7DA OP1 O1P O 0 1 N N N -7.223 1.614 -73.277 2.575 -0.951 -6.059 OP1 7DA 2 7DA OP2 O2P O 0 1 N N N -8.115 3.215 -71.513 0.339 -0.227 -4.868 OP2 7DA 3 7DA "O5'" O5* O 0 1 N N N -6.852 1.121 -70.896 2.211 -1.232 -3.468 "O5'" 7DA 4 7DA N9 N9 N 0 1 Y N N -4.810 -2.309 -70.572 1.818 1.923 -0.049 N9 7DA 5 7DA C4 C4 C 0 1 Y N N -4.468 -3.624 -70.461 1.891 2.943 0.868 C4 7DA 6 7DA N3 N3 N 0 1 Y N N -3.934 -4.242 -69.354 2.238 2.799 2.159 N3 7DA 7 7DA C2 C2 C 0 1 Y N N -3.717 -5.541 -69.584 2.217 3.985 2.801 C2 7DA 8 7DA N1 N1 N 0 1 Y N N -3.958 -6.238 -70.727 1.905 5.206 2.312 N1 7DA 9 7DA C6 C6 C 0 1 Y N N -4.493 -5.589 -71.825 1.564 5.285 1.005 C6 7DA 10 7DA N6 N6 N 0 1 N N N -4.721 -6.309 -72.948 1.230 6.531 0.444 N6 7DA 11 7DA C5 C5 C 0 1 Y N N -4.772 -4.209 -71.707 1.548 4.127 0.228 C5 7DA 12 7DA C7 C7 C 0 1 Y N N -5.298 -3.270 -72.576 1.259 3.800 -1.121 C7 7DA 13 7DA C8 C8 C 0 1 Y N N -5.303 -2.152 -71.859 1.432 2.439 -1.264 C8 7DA 14 7DA "C2'" C2* C 0 1 N N N -4.045 0.022 -69.930 0.878 -0.312 0.578 "C2'" 7DA 15 7DA "C5'" C5* C 0 1 N N N -7.218 0.953 -69.525 1.348 -1.500 -2.377 "C5'" 7DA 16 7DA "C4'" C4* C 0 1 N N R -6.041 0.384 -68.765 2.156 -1.432 -1.088 "C4'" 7DA 17 7DA "O4'" O4* O 0 1 N N N -5.937 -1.047 -68.946 2.678 -0.093 -0.958 "O4'" 7DA 18 7DA "C1'" C1* C 0 1 N N R -4.653 -1.322 -69.508 2.101 0.516 0.211 "C1'" 7DA 19 7DA "C3'" C3* C 0 1 N N S -4.636 0.960 -68.893 1.309 -1.697 0.152 "C3'" 7DA 20 7DA "O3'" O3* O 0 1 N N N -3.873 0.774 -67.695 2.127 -2.250 1.180 "O3'" 7DA 21 7DA OP3 O3P O 0 1 N Y N ? ? ? 0.886 -2.697 -5.051 OP3 7DA 22 7DA HOP2 2HOP H 0 0 N N N -8.498 3.354 -70.655 -0.163 -0.014 -5.684 HOP2 7DA 23 7DA H2 H2 H 0 1 N N N -3.290 -6.101 -68.734 2.485 3.956 3.852 H2 7DA 24 7DA HN61 1HN6 H 0 0 N N N -5.115 -5.830 -73.757 1.960 7.147 0.144 HN61 7DA 25 7DA HN62 2HN6 H 0 0 N N N -5.308 -7.109 -72.716 0.272 6.825 0.437 HN62 7DA 26 7DA H7 H7 H 0 1 N N N -5.640 -3.387 -73.617 0.957 4.477 -1.908 H7 7DA 27 7DA H8 H8 H 0 1 N N N -5.673 -1.203 -72.283 1.314 1.796 -2.126 H8 7DA 28 7DA "H2'" 1H2* H 0 1 N N N -2.932 0.037 -70.007 0.008 0.008 -0.009 "H2'" 7DA 29 7DA "H2''" 2H2* H 0 0 N N N -4.223 0.312 -70.991 0.635 -0.225 1.641 "H2''" 7DA 30 7DA "H5'" 1H5* H 0 1 N N N -7.600 1.896 -69.069 0.551 -0.756 -2.359 "H5'" 7DA 31 7DA "H5''" 2H5* H 0 0 N N N -8.138 0.335 -69.404 0.917 -2.495 -2.497 "H5''" 7DA 32 7DA "H4'" H4* H 0 1 N N N -6.349 0.720 -67.747 3.008 -2.117 -1.157 "H4'" 7DA 33 7DA "H1'" H1* H 0 1 N N N -3.935 -1.783 -68.790 2.853 0.503 1.007 "H1'" 7DA 34 7DA H1 H1 H 0 1 N N N -4.636 2.051 -69.122 0.475 -2.383 -0.018 H1 7DA 35 7DA "HO3'" H3T H 0 0 N Y N -4.242 1.361 -67.046 2.928 -1.706 1.218 "HO3'" 7DA 36 7DA HOP3 3HOP H 0 0 N N N -0.383 0.139 0.857 0.508 -2.990 -5.907 HOP3 7DA 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7DA P OP1 DOUB N N 1 7DA P OP2 SING N N 2 7DA P "O5'" SING N N 3 7DA P OP3 SING N N 4 7DA OP2 HOP2 SING N N 5 7DA "O5'" "C5'" SING N N 6 7DA N9 C4 SING Y N 7 7DA N9 C8 SING Y N 8 7DA N9 "C1'" SING N N 9 7DA C4 N3 SING Y N 10 7DA C4 C5 DOUB Y N 11 7DA N3 C2 DOUB Y N 12 7DA C2 N1 SING Y N 13 7DA C2 H2 SING N N 14 7DA N1 C6 DOUB Y N 15 7DA C6 N6 SING N N 16 7DA C6 C5 SING Y N 17 7DA N6 HN61 SING N N 18 7DA N6 HN62 SING N N 19 7DA C5 C7 SING Y N 20 7DA C7 C8 DOUB Y N 21 7DA C7 H7 SING N N 22 7DA C8 H8 SING N N 23 7DA "C2'" "C1'" SING N N 24 7DA "C2'" "C3'" SING N N 25 7DA "C2'" "H2'" SING N N 26 7DA "C2'" "H2''" SING N N 27 7DA "C5'" "C4'" SING N N 28 7DA "C5'" "H5'" SING N N 29 7DA "C5'" "H5''" SING N N 30 7DA "C4'" "O4'" SING N N 31 7DA "C4'" "C3'" SING N N 32 7DA "C4'" "H4'" SING N N 33 7DA "O4'" "C1'" SING N N 34 7DA "C1'" "H1'" SING N N 35 7DA "C3'" "O3'" SING N N 36 7DA "C3'" H1 SING N N 37 7DA "O3'" "HO3'" SING N N 38 7DA OP3 HOP3 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7DA SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2ccc1c(ncnc12)N)CC3O" 7DA SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(ccc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" 7DA SMILES CACTVS 3.341 "Nc1ncnc2n(ccc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" 7DA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cn(c2c1c(ncn2)N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" 7DA SMILES "OpenEye OEToolkits" 1.5.0 "c1cn(c2c1c(ncn2)N)C3CC(C(O3)COP(=O)(O)O)O" 7DA InChI InChI 1.03 "InChI=1S/C11H15N4O6P/c12-10-6-1-2-15(11(6)14-5-13-10)9-3-7(16)8(21-9)4-20-22(17,18)19/h1-2,5,7-9,16H,3-4H2,(H2,12,13,14)(H2,17,18,19)/t7-,8+,9+/m0/s1" 7DA InChIKey InChI 1.03 JNMXDKIIPORENX-DJLDLDEBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7DA "SYSTEMATIC NAME" ACDLabs 10.04 "7-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 7DA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-aminopyrrolo[3,2-e]pyrimidin-7-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7DA "Create component" 2004-08-08 RCSB 7DA "Modify descriptor" 2011-06-04 RCSB #