data_7E4
#
_chem_comp.id 7E4
_chem_comp.name "11-[(2~{S})-2-[(2-pyridin-3-ylquinazolin-4-yl)amino]-2,3-dihydro-1~{H}-inden-5-yl]undec-10-ynoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H34 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-10-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 518.649
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7E4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LVX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7E4 C2 C1 C 0 1 N N N N N N 1.022 -48.422 -22.248 13.889 1.169 1.545 C2 7E4 1
7E4 C3 C2 C 0 1 N N N N N N 1.906 -49.102 -23.272 12.401 1.408 1.571 C3 7E4 2
7E4 C4 C3 C 0 1 N N N N N N 2.413 -48.015 -24.229 11.701 0.360 0.704 C4 7E4 3
7E4 C5 C4 C 0 1 N N N N N N 1.297 -47.362 -25.053 10.191 0.603 0.730 C5 7E4 4
7E4 C6 C5 C 0 1 N N N N N N 1.775 -46.671 -26.338 9.491 -0.446 -0.137 C6 7E4 5
7E4 C7 C6 C 0 1 N N N N N N 1.726 -45.144 -26.329 7.980 -0.203 -0.111 C7 7E4 6
7E4 C8 C7 C 0 1 N N N N N N 0.320 -44.597 -26.233 7.280 -1.251 -0.978 C8 7E4 7
7E4 C11 C8 C 0 1 N N N N N N -1.686 -42.767 -25.309 3.616 -1.824 -1.793 C11 7E4 8
7E4 C12 C9 C 0 1 N N N N N N -2.031 -42.885 -24.083 2.457 -1.637 -1.773 C12 7E4 9
7E4 C15 C10 C 0 1 Y N N N N N -0.630 -43.589 -20.933 -1.173 -2.017 -2.440 C15 7E4 10
7E4 C16 C11 C 0 1 Y N N N N N -1.701 -43.273 -20.118 -1.693 -0.967 -1.700 C16 7E4 11
7E4 C17 C12 C 0 1 N N N N N N -1.640 -43.347 -18.638 -3.128 -0.523 -1.508 C17 7E4 12
7E4 C18 C13 C 0 1 N N S N N N -2.877 -42.511 -18.272 -3.106 0.390 -0.264 C18 7E4 13
7E4 C19 C14 C 0 1 N N N N N N -3.861 -42.602 -19.457 -1.658 0.925 -0.270 C19 7E4 14
7E4 C21 C15 C 0 1 Y N N N N N -3.127 -42.714 -21.988 0.517 -0.349 -1.013 C21 7E4 15
7E4 N22 N1 N 0 1 N N N N N N -3.461 -42.982 -16.986 -4.067 1.487 -0.405 N22 7E4 16
7E4 C23 C16 C 0 1 Y N N N N N -3.059 -42.273 -15.828 -5.381 1.305 -0.030 C23 7E4 17
7E4 C27 C17 C 0 1 Y N N N N N -3.241 -41.818 -13.452 -7.662 2.108 0.243 C27 7E4 18
7E4 C30 C18 C 0 1 Y N N N N N -5.158 -43.822 -13.113 -6.926 4.582 -0.770 C30 7E4 19
7E4 C31 C19 C 0 1 Y N N N N N -4.613 -43.565 -14.366 -5.976 3.609 -0.668 C31 7E4 20
7E4 C32 C20 C 0 1 Y N N N N N -3.646 -42.562 -14.568 -6.326 2.354 -0.159 C32 7E4 21
7E4 C33 C21 C 0 1 Y N N N N N -0.739 -39.475 -14.915 -7.455 -1.367 1.363 C33 7E4 22
7E4 C34 C22 C 0 1 Y N N N N N -0.831 -38.308 -14.142 -8.772 -1.607 1.765 C34 7E4 23
7E4 C35 C23 C 0 1 Y N N N N N 0.153 -37.337 -14.254 -9.089 -2.859 2.263 C35 7E4 24
7E4 C36 C24 C 0 1 Y N N N N N 1.218 -37.530 -15.130 -8.102 -3.823 2.346 C36 7E4 25
7E4 C38 C25 C 0 1 Y N N N N N 0.346 -39.619 -15.783 -6.519 -2.394 1.474 C38 7E4 26
7E4 O1 O1 O 0 1 N N N N N N 1.531 -47.822 -21.303 14.343 0.254 0.900 O1 7E4 27
7E4 C9 C26 C 0 1 N N N N N N 0.182 -43.177 -26.795 5.770 -1.009 -0.951 C9 7E4 28
7E4 C10 C27 C 0 1 N N N N N N -1.260 -42.612 -26.735 5.070 -2.057 -1.818 C10 7E4 29
7E4 C13 C28 C 0 1 Y N N N N N -2.047 -43.095 -22.814 1.044 -1.410 -1.749 C13 7E4 30
7E4 C20 C29 C 0 1 Y N N N N N -2.921 -42.855 -20.606 -0.848 -0.134 -0.988 C20 7E4 31
7E4 C14 C30 C 0 1 Y N N N N N -0.802 -43.456 -22.297 0.187 -2.243 -2.469 C14 7E4 32
7E4 C29 C31 C 0 1 Y N N N N N -4.748 -43.069 -12.018 -8.239 4.343 -0.376 C29 7E4 33
7E4 C28 C32 C 0 1 Y N N N N N -3.797 -42.071 -12.192 -8.613 3.131 0.124 C28 7E4 34
7E4 N26 N2 N 0 1 Y N N N N N -2.327 -40.826 -13.606 -7.979 0.899 0.727 N26 7E4 35
7E4 C25 C33 C 0 1 Y N N N N N -1.768 -40.552 -14.817 -7.061 -0.044 0.821 C25 7E4 36
7E4 N24 N3 N 0 1 Y N N N N N -2.138 -41.274 -15.913 -5.794 0.144 0.455 N24 7E4 37
7E4 N37 N4 N 0 1 Y N N N N N 1.288 -38.655 -15.878 -6.867 -3.568 1.959 N37 7E4 38
7E4 O2 O2 O 0 1 N Y N N N N -0.297 -48.477 -22.459 14.710 1.976 2.235 O2 7E4 39
7E4 H1 H1 H 0 1 N N N N N N 1.328 -49.854 -23.829 12.039 1.333 2.596 H1 7E4 40
7E4 H2 H2 H 0 1 N N N N N N 2.756 -49.589 -22.772 12.186 2.404 1.182 H2 7E4 41
7E4 H3 H3 H 0 1 N N N N N N 3.137 -48.470 -24.921 12.064 0.435 -0.321 H3 7E4 42
7E4 H4 H4 H 0 1 N N N N N N 2.912 -47.234 -23.637 11.916 -0.635 1.093 H4 7E4 43
7E4 H5 H5 H 0 1 N N N N N N 0.800 -46.610 -24.423 9.828 0.527 1.755 H5 7E4 44
7E4 H6 H6 H 0 1 N N N N N N 0.574 -48.143 -25.331 9.976 1.598 0.341 H6 7E4 45
7E4 H7 H7 H 0 1 N N N N N N 1.143 -47.024 -27.166 9.853 -0.370 -1.162 H7 7E4 46
7E4 H8 H8 H 0 1 N N N N N N 2.817 -46.974 -26.517 9.705 -1.441 0.252 H8 7E4 47
7E4 H9 H9 H 0 1 N N N N N N 2.303 -44.780 -25.466 7.618 -0.278 0.914 H9 7E4 48
7E4 H10 H10 H 0 1 N N N N N N 2.183 -44.773 -27.258 7.765 0.792 -0.500 H10 7E4 49
7E4 H11 H11 H 0 1 N N N N N N 0.022 -44.584 -25.174 7.643 -1.176 -2.003 H11 7E4 50
7E4 H12 H12 H 0 1 N N N N N N -0.352 -45.262 -26.795 7.495 -2.247 -0.589 H12 7E4 51
7E4 H13 H13 H 0 1 N N N N N N 0.308 -43.928 -20.518 -1.836 -2.664 -2.994 H13 7E4 52
7E4 H14 H14 H 0 1 N N N N N N -1.727 -44.383 -18.278 -3.471 0.035 -2.380 H14 7E4 53
7E4 H15 H15 H 0 1 N N N N N N -0.715 -42.899 -18.246 -3.771 -1.385 -1.333 H15 7E4 54
7E4 H16 H16 H 0 1 N N N N N N -2.566 -41.462 -18.161 -3.306 -0.184 0.641 H16 7E4 55
7E4 H17 H17 H 0 1 N N N N N N -4.417 -41.662 -19.591 -1.607 1.871 -0.810 H17 7E4 56
7E4 H18 H18 H 0 1 N N N N N N -4.571 -43.432 -19.328 -1.298 1.052 0.751 H18 7E4 57
7E4 H19 H19 H 0 1 N N N N N N -4.054 -42.337 -22.394 1.176 0.301 -0.457 H19 7E4 58
7E4 H20 H20 H 0 1 N N N N N N -4.456 -42.913 -17.058 -3.779 2.341 -0.763 H20 7E4 59
7E4 H21 H21 H 0 1 N N N N N N -5.895 -44.602 -12.991 -6.656 5.551 -1.163 H21 7E4 60
7E4 H22 H22 H 0 1 N N N N N N -4.942 -44.153 -15.210 -4.960 3.806 -0.977 H22 7E4 61
7E4 H23 H23 H 0 1 N N N N N N -1.661 -38.167 -13.465 -9.523 -0.835 1.689 H23 7E4 62
7E4 H24 H24 H 0 1 N N N N N N 0.093 -36.434 -13.664 -10.096 -3.080 2.583 H24 7E4 63
7E4 H25 H25 H 0 1 N N N N N N 1.990 -36.780 -15.213 -8.346 -4.801 2.735 H25 7E4 64
7E4 H26 H26 H 0 1 N N N N N N 0.433 -40.511 -16.385 -5.498 -2.225 1.163 H26 7E4 65
7E4 H27 H27 H 0 1 N N N N N N 0.506 -43.188 -27.846 5.407 -1.084 0.074 H27 7E4 66
7E4 H28 H28 H 0 1 N N N N N N 0.839 -42.511 -26.216 5.555 -0.013 -1.340 H28 7E4 67
7E4 H29 H29 H 0 1 N N N N N N -1.271 -41.552 -27.027 5.285 -3.052 -1.429 H29 7E4 68
7E4 H30 H30 H 0 1 N N N N N N -1.925 -43.182 -27.400 5.432 -1.982 -2.844 H30 7E4 69
7E4 H31 H31 H 0 1 N N N N N N 0.029 -43.632 -22.965 0.587 -3.067 -3.041 H31 7E4 70
7E4 H32 H32 H 0 1 N N N N N N -5.165 -43.258 -11.040 -8.973 5.130 -0.467 H32 7E4 71
7E4 H33 H33 H 0 1 N N N N N N -3.482 -41.482 -11.343 -9.636 2.960 0.425 H33 7E4 72
7E4 H34 H34 H 0 1 N N N N N N -0.748 -47.991 -21.778 15.657 1.786 2.184 H34 7E4 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7E4 C9 C10 SING N N 1
7E4 C9 C8 SING N N 2
7E4 C10 C11 SING N N 3
7E4 C6 C7 SING N N 4
7E4 C6 C5 SING N N 5
7E4 C7 C8 SING N N 6
7E4 C11 C12 TRIP N N 7
7E4 C5 C4 SING N N 8
7E4 C4 C3 SING N N 9
7E4 C12 C13 SING N N 10
7E4 C3 C2 SING N N 11
7E4 C13 C14 DOUB Y N 12
7E4 C13 C21 SING Y N 13
7E4 C14 C15 SING Y N 14
7E4 C2 O1 DOUB N N 15
7E4 C21 C20 DOUB Y N 16
7E4 C15 C16 DOUB Y N 17
7E4 C20 C16 SING Y N 18
7E4 C20 C19 SING N N 19
7E4 C16 C17 SING N N 20
7E4 C19 C18 SING N N 21
7E4 C17 C18 SING N N 22
7E4 C18 N22 SING N N 23
7E4 N22 C23 SING N N 24
7E4 N24 C23 DOUB Y N 25
7E4 N24 C25 SING Y N 26
7E4 N37 C38 DOUB Y N 27
7E4 N37 C36 SING Y N 28
7E4 C23 C32 SING Y N 29
7E4 C38 C33 SING Y N 30
7E4 C36 C35 DOUB Y N 31
7E4 C33 C25 SING N N 32
7E4 C33 C34 DOUB Y N 33
7E4 C25 N26 DOUB Y N 34
7E4 C32 C31 DOUB Y N 35
7E4 C32 C27 SING Y N 36
7E4 C31 C30 SING Y N 37
7E4 C35 C34 SING Y N 38
7E4 N26 C27 SING Y N 39
7E4 C27 C28 DOUB Y N 40
7E4 C30 C29 DOUB Y N 41
7E4 C28 C29 SING Y N 42
7E4 C2 O2 SING N N 43
7E4 C3 H1 SING N N 44
7E4 C3 H2 SING N N 45
7E4 C4 H3 SING N N 46
7E4 C4 H4 SING N N 47
7E4 C5 H5 SING N N 48
7E4 C5 H6 SING N N 49
7E4 C6 H7 SING N N 50
7E4 C6 H8 SING N N 51
7E4 C7 H9 SING N N 52
7E4 C7 H10 SING N N 53
7E4 C8 H11 SING N N 54
7E4 C8 H12 SING N N 55
7E4 C15 H13 SING N N 56
7E4 C17 H14 SING N N 57
7E4 C17 H15 SING N N 58
7E4 C18 H16 SING N N 59
7E4 C19 H17 SING N N 60
7E4 C19 H18 SING N N 61
7E4 C21 H19 SING N N 62
7E4 N22 H20 SING N N 63
7E4 C30 H21 SING N N 64
7E4 C31 H22 SING N N 65
7E4 C34 H23 SING N N 66
7E4 C35 H24 SING N N 67
7E4 C36 H25 SING N N 68
7E4 C38 H26 SING N N 69
7E4 C9 H27 SING N N 70
7E4 C9 H28 SING N N 71
7E4 C10 H29 SING N N 72
7E4 C10 H30 SING N N 73
7E4 C14 H31 SING N N 74
7E4 C29 H32 SING N N 75
7E4 C28 H33 SING N N 76
7E4 O2 H34 SING N N 77
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7E4 InChI InChI 1.03 "InChI=1S/C33H34N4O2/c38-31(39)16-8-6-4-2-1-3-5-7-12-24-17-18-25-21-28(22-27(25)20-24)35-33-29-14-9-10-15-30(29)36-32(37-33)26-13-11-19-34-23-26/h9-11,13-15,17-20,23,28H,1-6,8,16,21-22H2,(H,38,39)(H,35,36,37)/t28-/m0/s1"
7E4 InChIKey InChI 1.03 OOVVDXXXFLHSBX-NDEPHWFRSA-N
7E4 SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCCCCCCCC#Cc1ccc2C[C@@H](Cc2c1)Nc3nc(nc4ccccc34)c5cccnc5"
7E4 SMILES CACTVS 3.385 "OC(=O)CCCCCCCCC#Cc1ccc2C[CH](Cc2c1)Nc3nc(nc4ccccc34)c5cccnc5"
7E4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)c(nc(n2)c3cccnc3)N[C@H]4Cc5ccc(cc5C4)C#CCCCCCCCCC(=O)O"
7E4 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)c(nc(n2)c3cccnc3)NC4Cc5ccc(cc5C4)C#CCCCCCCCCC(=O)O"
#
_pdbx_chem_comp_identifier.comp_id 7E4
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "11-[(2~{S})-2-[(2-pyridin-3-ylquinazolin-4-yl)amino]-2,3-dihydro-1~{H}-inden-5-yl]undec-10-ynoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7E4 "Create component" 2016-10-13 EBI
7E4 "Initial release" 2017-10-25 RCSB
7E4 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 7E4
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C2
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#