data_7GU # _chem_comp.id 7GU _chem_comp.name "7-DEAZA-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H15 N4 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.233 _chem_comp.one_letter_code G _chem_comp.three_letter_code 7GU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1U1M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7GU P P P 0 1 N N N 20.696 27.499 -153.812 3.461 4.758 -3.952 P 7GU 1 7GU OP1 O1P O 0 1 N N N 21.963 27.427 -153.061 4.534 5.779 -3.708 OP1 7GU 2 7GU OP2 O2P O 0 1 N N N 20.215 28.806 -154.328 1.983 5.359 -4.217 OP2 7GU 3 7GU "O5'" O5* O 0 1 N N N 19.570 26.827 -152.909 3.235 3.702 -2.745 "O5'" 7GU 4 7GU N9 N9 N 0 1 Y N N 20.047 21.798 -150.153 -0.077 2.488 0.819 N9 7GU 5 7GU C4 C4 C 0 1 Y N N 20.868 21.242 -151.080 -0.684 2.411 2.043 C4 7GU 6 7GU N3 N3 N 0 1 N N N 21.561 21.927 -152.041 -0.192 1.693 3.081 N3 7GU 7 7GU C2 C2 C 0 1 N N N 22.282 21.127 -152.822 -0.933 1.757 4.163 C2 7GU 8 7GU N2 N2 N 0 1 N N N 23.025 21.645 -153.815 -0.597 1.096 5.316 N2 7GU 9 7GU N1 N1 N 0 1 N N N 22.309 19.742 -152.667 -2.126 2.508 4.223 N1 7GU 10 7GU C6 C6 C 0 1 N N N 21.597 19.020 -151.680 -2.659 3.259 3.169 C6 7GU 11 7GU O6 O6 O 0 1 N N N 21.692 17.788 -151.638 -3.696 3.909 3.225 O6 7GU 12 7GU C5 C5 C 0 1 Y N N 20.823 19.880 -150.831 -1.831 3.175 1.991 C5 7GU 13 7GU C7 C7 C 0 1 Y N N 19.988 19.604 -149.751 -1.925 3.733 0.698 C7 7GU 14 7GU C8 C8 C 0 1 Y N N 19.548 20.776 -149.381 -0.825 3.291 -0.008 C8 7GU 15 7GU "C2'" C2* C 0 1 N N N 20.743 24.297 -149.636 0.970 0.461 -0.212 "C2'" 7GU 16 7GU "C5'" C5* C 0 1 N N N 19.506 25.407 -152.756 2.240 2.706 -2.896 "C5'" 7GU 17 7GU "C4'" C4* C 0 1 N N R 19.230 25.031 -151.315 2.219 1.846 -1.646 "C4'" 7GU 18 7GU "O4'" O4* O 0 1 N N N 18.886 23.657 -151.074 1.879 2.654 -0.508 "O4'" 7GU 19 7GU "C1'" C1* C 0 1 N N R 19.747 23.217 -150.039 1.171 1.827 0.433 "C1'" 7GU 20 7GU "C3'" C3* C 0 1 N N S 19.962 25.530 -150.070 1.177 0.741 -1.684 "C3'" 7GU 21 7GU "O3'" O3* O 0 1 N N N 19.095 26.127 -149.114 1.636 -0.408 -2.366 "O3'" 7GU 22 7GU OP3 O3P O 0 1 N Y N ? ? ? 3.708 3.799 -5.230 OP3 7GU 23 7GU HOP2 2HOP H 0 0 N N N 19.398 28.852 -154.811 1.875 6.082 -4.871 HOP2 7GU 24 7GU HN21 1HN2 H 0 0 N N N 23.577 21.031 -154.413 0.318 1.223 5.682 HN21 7GU 25 7GU HN22 2HN2 H 0 0 N N N 23.644 22.351 -153.418 -1.281 0.514 5.741 HN22 7GU 26 7GU HN1 HN1 H 0 1 N N N 22.890 19.219 -153.322 -2.639 2.503 5.099 HN1 7GU 27 7GU H7 H7 H 0 1 N N N 19.725 18.642 -149.279 -2.699 4.383 0.315 H7 7GU 28 7GU H8 H8 H 0 1 N N N 18.851 20.887 -148.533 -0.514 3.481 -1.026 H8 7GU 29 7GU "H2'" 1H2* H 0 1 N N N 21.081 24.279 -148.573 -0.002 0.004 0.001 "H2'" 7GU 30 7GU "H2''" 2H2* H 0 0 N N N 21.771 24.195 -150.054 1.736 -0.240 0.147 "H2''" 7GU 31 7GU "H5'" 1H5* H 0 1 N N N 18.762 24.950 -153.450 1.270 3.186 -3.037 "H5'" 7GU 32 7GU "H5''" 2H5* H 0 0 N N N 20.425 24.909 -153.142 2.475 2.094 -3.768 "H5''" 7GU 33 7GU "H4'" H4* H 0 1 N N N 18.404 25.777 -151.375 3.224 1.436 -1.487 "H4'" 7GU 34 7GU "H1'" H1* H 0 1 N N N 19.279 23.135 -149.029 1.753 1.756 1.357 "H1'" 7GU 35 7GU "H3'" H3* H 0 1 N N N 20.652 26.388 -150.240 0.241 1.086 -2.140 "H3'" 7GU 36 7GU "HO3'" H3T H 0 0 N Y N 18.607 26.896 -149.384 2.418 -0.720 -1.884 "HO3'" 7GU 37 7GU HOP3 3HOP H 0 0 N N N -0.816 0.046 -0.483 3.963 4.205 -6.086 HOP3 7GU 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7GU P OP1 DOUB N N 1 7GU P OP2 SING N N 2 7GU P "O5'" SING N N 3 7GU P OP3 SING N N 4 7GU OP2 HOP2 SING N N 5 7GU "O5'" "C5'" SING N N 6 7GU N9 C4 SING Y N 7 7GU N9 C8 SING Y N 8 7GU N9 "C1'" SING N N 9 7GU C4 N3 SING N N 10 7GU C4 C5 DOUB Y N 11 7GU N3 C2 DOUB N N 12 7GU C2 N2 SING N N 13 7GU C2 N1 SING N N 14 7GU N2 HN21 SING N N 15 7GU N2 HN22 SING N N 16 7GU N1 C6 SING N N 17 7GU N1 HN1 SING N N 18 7GU C6 O6 DOUB N N 19 7GU C6 C5 SING N N 20 7GU C5 C7 SING Y N 21 7GU C7 C8 DOUB Y N 22 7GU C7 H7 SING N N 23 7GU C8 H8 SING N N 24 7GU "C2'" "C1'" SING N N 25 7GU "C2'" "C3'" SING N N 26 7GU "C2'" "H2'" SING N N 27 7GU "C2'" "H2''" SING N N 28 7GU "C5'" "C4'" SING N N 29 7GU "C5'" "H5'" SING N N 30 7GU "C5'" "H5''" SING N N 31 7GU "C4'" "O4'" SING N N 32 7GU "C4'" "C3'" SING N N 33 7GU "C4'" "H4'" SING N N 34 7GU "O4'" "C1'" SING N N 35 7GU "C1'" "H1'" SING N N 36 7GU "C3'" "O3'" SING N N 37 7GU "C3'" "H3'" SING N N 38 7GU "O3'" "HO3'" SING N N 39 7GU OP3 HOP3 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7GU SMILES ACDLabs 10.04 "O=C1c2c(N=C(N)N1)n(cc2)C3OC(C(O)C3)COP(=O)(O)O" 7GU SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(ccc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" 7GU SMILES CACTVS 3.341 "NC1=Nc2n(ccc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" 7GU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cn(c2c1C(=O)NC(=N2)N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" 7GU SMILES "OpenEye OEToolkits" 1.5.0 "c1cn(c2c1C(=O)NC(=N2)N)C3CC(C(O3)COP(=O)(O)O)O" 7GU InChI InChI 1.03 "InChI=1S/C11H15N4O7P/c12-11-13-9-5(10(17)14-11)1-2-15(9)8-3-6(16)7(22-8)4-21-23(18,19)20/h1-2,6-8,16H,3-4H2,(H2,18,19,20)(H3,12,13,14,17)/t6-,7+,8+/m0/s1" 7GU InChIKey InChI 1.03 XSAPYRXAHBJNQR-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7GU "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-7-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" 7GU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2-amino-4-oxo-3H-pyrrolo[2,3-d]pyrimidin-7-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7GU "Create component" 2004-08-08 RCSB 7GU "Modify descriptor" 2011-06-04 RCSB #