data_7I8 # _chem_comp.id 7I8 _chem_comp.name "DL-6-deoxy-6-phosphoryloxymethyl-scyllo-inositol 1,2,4-trisphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H18 O18 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1R,2S,3R,4S,5S,6R)-2,4-bis(oxidanyl)-3,6-diphosphonooxy-5-(phosphonooxymethyl)cyclohexyl] dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-12 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.102 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7I8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PPE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7I8 C1 C1 C 0 1 N N R N N N 11.445 28.789 85.148 0.641 0.737 -0.309 C1 7I8 1 7I8 O1 O1 O 0 1 N N N N N N 12.742 28.583 85.742 1.096 1.926 0.341 O1 7I8 2 7I8 C2 C2 C 0 1 N N R N N N 10.876 30.116 85.616 1.601 -0.413 0.002 C2 7I8 3 7I8 C3 C3 C 0 1 N N S N N N 9.495 30.363 85.030 1.114 -1.686 -0.694 C3 7I8 4 7I8 C4 C4 C 0 1 N N R N N N 9.613 30.291 83.514 -0.287 -2.039 -0.188 C4 7I8 5 7I8 C5 C5 C 0 1 N N S N N N 10.209 28.964 83.072 -1.246 -0.889 -0.499 C5 7I8 6 7I8 P6 P1 P 0 1 N N N N N N 14.465 28.658 81.990 -4.253 2.255 0.328 P6 7I8 7 7I8 O56 O2 O 0 1 N N N N N N 15.229 27.698 81.101 -3.872 3.595 0.827 O56 7I8 8 7I8 O46 O3 O 0 1 N N N N N N 13.326 29.344 81.263 -5.483 1.688 1.200 O46 7I8 9 7I8 O66 O4 O 0 1 N N N N N N 15.369 29.621 82.724 -4.695 2.363 -1.216 O66 7I8 10 7I8 O36 O5 O 0 1 N N N N N N 13.767 27.755 83.145 -2.998 1.256 0.459 O36 7I8 11 7I8 O12 O6 O 0 1 N N N N N N 10.796 30.750 89.485 3.991 1.228 1.535 O12 7I8 12 7I8 O2 O7 O 0 1 N N N N N N 10.793 30.125 87.056 2.909 -0.083 -0.470 O2 7I8 13 7I8 O22 O8 O 0 1 N N N N N N 12.543 31.701 87.928 5.512 0.275 -0.386 O22 7I8 14 7I8 C06 C6 C 0 1 N N N N N N 12.333 27.583 83.122 -1.719 1.534 -0.115 C06 7I8 15 7I8 P2 P2 P 0 1 N N N N N N 11.087 31.323 88.116 4.192 0.013 0.498 P2 7I8 16 7I8 O32 O9 O 0 1 N N N N N N 10.139 32.438 87.724 4.342 -1.255 1.246 O32 7I8 17 7I8 C6 C7 C 0 1 N N S N N N 11.620 28.810 83.642 -0.759 0.384 0.196 C6 7I8 18 7I8 O3 O10 O 0 1 N N N N N N 9.030 31.647 85.430 2.010 -2.760 -0.403 O3 7I8 19 7I8 O4 O11 O 0 1 N N N N N N 8.309 30.434 82.917 -0.742 -3.228 -0.838 O4 7I8 20 7I8 O5 O12 O 0 1 N N N N N N 10.232 28.869 81.653 -2.554 -1.219 -0.027 O5 7I8 21 7I8 P1 P3 P 0 1 N N N N N N 13.309 27.522 86.834 1.484 3.269 -0.459 P1 7I8 22 7I8 O11 O13 O 0 1 N N N N N N 12.483 26.269 86.646 0.170 3.866 -1.173 O11 7I8 23 7I8 O21 O14 O 0 1 N N N N N N 13.083 28.186 88.177 2.076 4.355 0.572 O21 7I8 24 7I8 O31 O15 O 0 1 N N N N N N 14.778 27.318 86.523 2.504 2.955 -1.485 O31 7I8 25 7I8 P4 P4 P 0 1 N N N N N N 7.516 30.697 81.523 -1.129 -4.570 -0.039 P4 7I8 26 7I8 O14 O16 O 0 1 N N N N N N 6.818 29.399 81.185 -2.415 -4.290 0.890 O14 7I8 27 7I8 O24 O17 O 0 1 N N N N N N 6.552 31.836 81.785 -1.471 -5.741 -1.090 O24 7I8 28 7I8 O34 O18 O 0 1 N N N N N N 8.595 31.064 80.524 0.010 -4.986 0.809 O34 7I8 29 7I8 H1 H1 H 0 1 N N N N N N 10.758 27.976 85.427 0.608 0.902 -1.386 H1 7I8 30 7I8 H2 H2 H 0 1 N N N N N N 11.546 30.921 85.281 1.634 -0.578 1.079 H2 7I8 31 7I8 H3 H3 H 0 1 N N N N N N 8.808 29.577 85.377 1.081 -1.521 -1.771 H3 7I8 32 7I8 H4 H4 H 0 1 N N N N N N 10.270 31.104 83.172 -0.254 -2.204 0.889 H4 7I8 33 7I8 H5 H5 H 0 1 N N N N N N 9.586 28.156 83.483 -1.279 -0.724 -1.576 H5 7I8 34 7I8 H6 H6 H 0 1 N N N N N N 13.297 29.042 80.363 -6.276 2.241 1.167 H6 7I8 35 7I8 H7 H7 H 0 1 N N N N N N 16.273 29.447 82.491 -4.959 1.520 -1.610 H7 7I8 36 7I8 H8 H8 H 0 1 N N N N N N 10.052 31.202 89.866 3.886 2.092 1.114 H8 7I8 37 7I8 H9 H9 H 0 1 N N N N N N 12.600 32.587 87.591 6.325 0.344 0.133 H9 7I8 38 7I8 H10 H10 H 0 1 N N N N N N 12.012 27.395 82.087 -1.820 1.641 -1.195 H10 7I8 39 7I8 H11 H11 H 0 1 N N N N N N 12.066 26.721 83.751 -1.325 2.460 0.306 H11 7I8 40 7I8 H12 H12 H 0 1 N N N N N N 12.205 29.700 83.369 -0.726 0.219 1.273 H12 7I8 41 7I8 H13 H13 H 0 1 N N N N N N 9.445 31.894 86.248 1.762 -3.601 -0.813 H13 7I8 42 7I8 H14 H14 H 0 1 N N N N N N 9.709 29.569 81.280 -2.927 -2.017 -0.426 H14 7I8 43 7I8 H15 H15 H 0 1 N N N N N N 13.045 25.559 86.359 -0.541 4.095 -0.559 H15 7I8 44 7I8 H16 H16 H 0 1 N N N N N N 13.921 28.358 88.591 2.331 5.191 0.158 H16 7I8 45 7I8 H17 H17 H 0 1 N N N N N N 7.189 29.037 80.389 -3.201 -4.013 0.399 H17 7I8 46 7I8 H18 H18 H 0 1 N N N N N N 6.803 32.590 81.265 -1.714 -6.581 -0.677 H18 7I8 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7I8 O34 P4 DOUB N N 1 7I8 O56 P6 DOUB N N 2 7I8 O14 P4 SING N N 3 7I8 O46 P6 SING N N 4 7I8 P4 O24 SING N N 5 7I8 P4 O4 SING N N 6 7I8 O5 C5 SING N N 7 7I8 P6 O66 SING N N 8 7I8 P6 O36 SING N N 9 7I8 O4 C4 SING N N 10 7I8 C5 C4 SING N N 11 7I8 C5 C6 SING N N 12 7I8 C06 O36 SING N N 13 7I8 C06 C6 SING N N 14 7I8 C4 C3 SING N N 15 7I8 C6 C1 SING N N 16 7I8 C3 O3 SING N N 17 7I8 C3 C2 SING N N 18 7I8 C1 C2 SING N N 19 7I8 C1 O1 SING N N 20 7I8 C2 O2 SING N N 21 7I8 O1 P1 SING N N 22 7I8 O31 P1 DOUB N N 23 7I8 O11 P1 SING N N 24 7I8 P1 O21 SING N N 25 7I8 O2 P2 SING N N 26 7I8 O32 P2 DOUB N N 27 7I8 O22 P2 SING N N 28 7I8 P2 O12 SING N N 29 7I8 C1 H1 SING N N 30 7I8 C2 H2 SING N N 31 7I8 C3 H3 SING N N 32 7I8 C4 H4 SING N N 33 7I8 C5 H5 SING N N 34 7I8 O46 H6 SING N N 35 7I8 O66 H7 SING N N 36 7I8 O12 H8 SING N N 37 7I8 O22 H9 SING N N 38 7I8 C06 H10 SING N N 39 7I8 C06 H11 SING N N 40 7I8 C6 H12 SING N N 41 7I8 O3 H13 SING N N 42 7I8 O5 H14 SING N N 43 7I8 O11 H15 SING N N 44 7I8 O21 H16 SING N N 45 7I8 O14 H17 SING N N 46 7I8 O24 H18 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7I8 InChI InChI 1.06 "InChI=1S/C7H18O18P4/c8-3-2(1-22-26(10,11)12)5(23-27(13,14)15)7(25-29(19,20)21)4(9)6(3)24-28(16,17)18/h2-9H,1H2,(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)/t2-,3-,4-,5+,6+,7+/m0/s1" 7I8 InChIKey InChI 1.06 BQHPCPJMCBCUNO-YQHQLQMSSA-N 7I8 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O)[C@@H]1O[P](O)(O)=O" 7I8 SMILES CACTVS 3.385 "O[CH]1[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O[P](O)(O)=O" 7I8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)OP(=O)(O)O" 7I8 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id 7I8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R},2~{S},3~{R},4~{S},5~{S},6~{R})-2,4-bis(oxidanyl)-3,6-diphosphonooxy-5-(phosphonooxymethyl)cyclohexyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7I8 "Create component" 2023-07-12 PDBE 7I8 "Initial release" 2024-02-28 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 7I8 _pdbx_chem_comp_synonyms.name "[(1R,2S,3R,4S,5S,6R)-2,4-bis(oxidanyl)-3,6-diphosphonooxy-5-(phosphonooxymethyl)cyclohexyl] dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #