data_7JZ # _chem_comp.id 7JZ _chem_comp.name "2-deoxy-2,2-difluoro-beta-D-lyxo-hexopyranose" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 F2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2-DEOXY-2,2-DIFLUORO-BETA-D-GALACTOPYRANOSYL-ENZYME INTERMEDIATE; 2-deoxy-2,2-difluoro-beta-D-lyxo-hexose; 2-deoxy-2,2-difluoro-D-lyxo-hexose; 2-deoxy-2,2-difluoro-lyxo-hexose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-19 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 200.137 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7JZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HG4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 7JZ "2-DEOXY-2,2-DIFLUORO-BETA-D-GALACTOPYRANOSYL-ENZYME INTERMEDIATE" PDB ? 2 7JZ "2-deoxy-2,2-difluoro-beta-D-lyxo-hexose" PDB ? 3 7JZ "2-deoxy-2,2-difluoro-D-lyxo-hexose" PDB ? 4 7JZ "2-deoxy-2,2-difluoro-lyxo-hexose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7JZ F2A F2A F 0 1 N N N 20.046 68.685 84.175 1.464 0.071 1.296 F2A 7JZ 1 7JZ C2 C2 C 0 1 N N N 19.805 68.996 85.442 1.359 0.282 -0.082 C2 7JZ 2 7JZ F2B F2B F 0 1 N N N 18.792 69.855 85.521 2.606 0.653 -0.596 F2B 7JZ 3 7JZ C1 C1 C 0 1 N N R 21.069 69.658 85.994 0.343 1.396 -0.353 C1 7JZ 4 7JZ C3 C3 C 0 1 N N S 19.451 67.737 86.257 0.887 -1.006 -0.763 C3 7JZ 5 7JZ O3 O3 O 0 1 N N N 18.676 66.801 85.501 1.792 -2.068 -0.455 O3 7JZ 6 7JZ C4 C4 C 0 1 N N R 20.698 67.047 86.816 -0.512 -1.360 -0.249 C4 7JZ 7 7JZ O4 O4 O 0 1 N N N 21.541 66.607 85.742 -0.453 -1.619 1.155 O4 7JZ 8 7JZ C5 C5 C 0 1 N N R 21.452 68.000 87.750 -1.456 -0.184 -0.513 C5 7JZ 9 7JZ O5 O5 O 0 1 N N N 21.244 69.385 87.390 -0.942 0.992 0.122 O5 7JZ 10 7JZ C6 C6 C 0 1 N N N 22.942 67.664 87.838 -2.842 -0.505 0.051 C6 7JZ 11 7JZ O6 O6 O 0 1 N N N 23.490 68.190 89.057 -3.752 0.540 -0.296 O6 7JZ 12 7JZ O1 O1 O 0 1 N Y N 22.201 69.152 85.282 0.749 2.586 0.326 O1 7JZ 13 7JZ H1 H1 H 0 1 N N N 20.971 70.746 85.866 0.291 1.588 -1.424 H1 7JZ 14 7JZ H3 H3 H 0 1 N N N 18.838 68.088 87.100 0.854 -0.857 -1.842 H3 7JZ 15 7JZ HO3 HO3 H 0 1 N Y N 18.504 67.156 84.637 2.700 -1.908 -0.746 HO3 7JZ 16 7JZ H4 H4 H 0 1 N N N 20.393 66.165 87.397 -0.878 -2.245 -0.768 H4 7JZ 17 7JZ HO4 HO4 H 0 1 N Y N 21.023 66.510 84.952 0.132 -2.350 1.396 HO4 7JZ 18 7JZ H5 H5 H 0 1 N N N 21.028 67.854 88.754 -1.532 -0.013 -1.587 H5 7JZ 19 7JZ H61 H6 H 0 1 N N N 23.071 66.572 87.822 -3.194 -1.448 -0.366 H61 7JZ 20 7JZ H62 H6A H 0 1 N N N 23.466 68.113 86.981 -2.781 -0.588 1.137 H62 7JZ 21 7JZ HO6 HO6 H 0 1 N N N 24.428 68.306 88.959 -4.652 0.403 0.030 HO6 7JZ 22 7JZ HO1 H10 H 0 1 N Y N 21.975 69.040 84.366 0.151 3.335 0.198 HO1 7JZ 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7JZ F2A C2 SING N N 1 7JZ C2 F2B SING N N 2 7JZ C2 C1 SING N N 3 7JZ C2 C3 SING N N 4 7JZ C1 O5 SING N N 5 7JZ C1 O1 SING N N 6 7JZ C1 H1 SING N N 7 7JZ C3 O3 SING N N 8 7JZ C3 C4 SING N N 9 7JZ C3 H3 SING N N 10 7JZ O3 HO3 SING N N 11 7JZ C4 O4 SING N N 12 7JZ C4 C5 SING N N 13 7JZ C4 H4 SING N N 14 7JZ O4 HO4 SING N N 15 7JZ C5 O5 SING N N 16 7JZ C5 C6 SING N N 17 7JZ C5 H5 SING N N 18 7JZ C6 O6 SING N N 19 7JZ C6 H61 SING N N 20 7JZ C6 H62 SING N N 21 7JZ O6 HO6 SING N N 22 7JZ O1 HO1 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7JZ SMILES ACDLabs 10.04 "FC1(F)C(O)C(O)C(OC1O)CO" 7JZ SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](O)C(F)(F)[C@@H](O)[C@H]1O" 7JZ SMILES CACTVS 3.341 "OC[CH]1O[CH](O)C(F)(F)[CH](O)[CH]1O" 7JZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H](C([C@@H](O1)O)(F)F)O)O)O" 7JZ SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)(F)F)O)O)O" 7JZ InChI InChI 1.03 "InChI=1S/C6H10F2O5/c7-6(8)4(11)3(10)2(1-9)13-5(6)12/h2-5,9-12H,1H2/t2-,3+,4+,5-/m1/s1" 7JZ InChIKey InChI 1.03 SHBCJQOMZTUYEL-MGCNEYSASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7JZ "SYSTEMATIC NAME" ACDLabs 10.04 "2-deoxy-2,2-difluoro-beta-D-lyxo-hexopyranose" 7JZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4S,5R,6R)-3,3-difluoro-6-(hydroxymethyl)oxane-2,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 7JZ "CARBOHYDRATE ISOMER" D PDB ? 7JZ "CARBOHYDRATE RING" pyranose PDB ? 7JZ "CARBOHYDRATE ANOMER" beta PDB ? 7JZ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7JZ "Create component" 2009-05-19 RCSB 7JZ "Modify descriptor" 2011-06-04 RCSB 7JZ "Other modification" 2020-07-03 RCSB 7JZ "Modify synonyms" 2020-07-17 RCSB 7JZ "Modify linking type" 2020-07-17 RCSB 7JZ "Modify atom id" 2020-07-17 RCSB 7JZ "Modify component atom id" 2020-07-17 RCSB 7JZ "Modify leaving atom flag" 2020-07-17 RCSB ##