data_7LO # _chem_comp.id 7LO _chem_comp.name ;[[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanyl-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-selanyl-phosphoryl] [(2~{R},3~{S},4~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H32 N10 O17 P3 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2016-11-14 _chem_comp.pdbx_modified_date 2017-12-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 880.428 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7LO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5M7Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7LO C2 C1 C 0 1 Y N N 8.507 1.577 -4.419 -8.615 -4.611 1.163 C2 7LO 1 7LO C5 C2 C 0 1 Y N N 7.671 -1.006 -4.505 -7.912 -2.224 2.178 C5 7LO 2 7LO C6 C3 C 0 1 Y N N 8.558 -0.543 -5.480 -8.766 -3.081 2.889 C6 7LO 3 7LO O6 O1 O 0 1 N N N 9.023 -1.342 -6.481 -9.253 -2.722 4.102 O6 7LO 4 7LO C8 C4 C 0 1 Y N N 6.345 -2.147 -3.258 -6.641 -0.646 1.404 C8 7LO 5 7LO O6G O2 O 0 1 N N N -11.159 3.131 6.087 8.897 -4.797 -3.401 O6G 7LO 6 7LO C6G C5 C 0 1 N N N -10.506 2.840 5.061 8.545 -4.649 -2.243 C6G 7LO 7 7LO N1G N1 N 0 1 N N N -11.082 2.918 3.848 8.646 -5.661 -1.354 N1G 7LO 8 7LO C2G C6 C 0 1 N N N -10.392 2.607 2.731 8.254 -5.483 -0.060 C2G 7LO 9 7LO N2G N2 N 0 1 N N N -10.991 2.693 1.517 8.369 -6.529 0.821 N2G 7LO 10 7LO N3G N3 N 0 1 N N N -9.094 2.207 2.808 7.770 -4.338 0.367 N3G 7LO 11 7LO C4G C7 C 0 1 Y N N -8.473 2.113 4.014 7.640 -3.292 -0.456 C4G 7LO 12 7LO C5G C8 C 0 1 Y N N -9.177 2.432 5.170 8.025 -3.412 -1.796 C5G 7LO 13 7LO N7G N4 N 0 1 Y N N -8.342 2.258 6.212 7.791 -2.216 -2.391 N7G 7LO 14 7LO C8G C9 C 0 1 Y N N -7.153 1.843 5.719 7.293 -1.391 -1.517 C8G 7LO 15 7LO N9G N5 N 0 1 Y N N -7.235 1.759 4.381 7.183 -2.010 -0.306 N9G 7LO 16 7LO C1P C10 C 0 1 N N R -6.141 1.334 3.457 6.669 -1.413 0.929 C1P 7LO 17 7LO O4P O3 O 0 1 N N N -5.116 0.423 3.859 5.798 -0.302 0.626 O4P 7LO 18 7LO C2P C11 C 0 1 N N R -5.835 2.019 2.130 7.823 -0.797 1.750 C2P 7LO 19 7LO O2P O4 O 0 1 N N N -6.882 1.791 1.182 8.239 -1.695 2.781 O2P 7LO 20 7LO C3P C12 C 0 1 N N S -4.517 1.372 1.721 7.210 0.484 2.358 C3P 7LO 21 7LO O3P O5 O 0 1 N N N -4.577 0.804 0.406 7.226 0.418 3.785 O3P 7LO 22 7LO C4P C13 C 0 1 N N R -4.212 0.275 2.755 5.758 0.491 1.833 C4P 7LO 23 7LO C5P C14 C 0 1 N N N -2.773 0.294 3.267 5.312 1.920 1.517 C5P 7LO 24 7LO O5P O6 O 0 1 N N N -1.940 -0.453 2.380 3.932 1.917 1.145 O5P 7LO 25 7LO PA P1 P 0 1 N N N -1.633 -2.014 2.638 3.129 3.254 0.745 PA 7LO 26 7LO OA2 O7 O 0 1 N N N -2.836 -2.666 3.277 3.841 3.948 -0.352 OA2 7LO 27 7LO OA1 O8 O 0 1 N N N -0.428 -2.138 3.540 3.037 4.227 2.024 OA1 7LO 28 7LO OAB O9 O 0 1 N N N -1.320 -2.745 1.237 1.645 2.864 0.259 OAB 7LO 29 7LO PB P2 P 0 1 N N S -0.307 -2.107 0.159 0.523 3.612 -0.622 PB 7LO 30 7LO OB O10 O 0 1 N N N 0.672 -1.222 0.832 1.063 3.895 -1.970 OB 7LO 31 7LO SEB SE1 SE 0 0 N N N -1.307 -1.086 -1.131 -0.055 5.561 0.387 SEB 7LO 32 7LO OBC O11 O 0 1 N N N 0.472 -3.301 -0.592 -0.775 2.668 -0.750 OBC 7LO 33 7LO PC P3 P 0 1 N N N 1.518 -4.238 0.198 -2.202 2.823 -1.479 PC 7LO 34 7LO OC1 O12 O 0 1 N N N 0.839 -4.830 1.410 -3.130 3.831 -0.632 OC1 7LO 35 7LO OC2 O13 O 0 1 N N N 1.990 -5.340 -0.721 -2.004 3.363 -2.842 OC2 7LO 36 7LO "O5'" O14 O 0 1 N N N 2.780 -3.360 0.680 -2.918 1.384 -1.570 "O5'" 7LO 37 7LO "C5'" C15 C 0 1 N N N 3.890 -3.089 -0.177 -4.153 1.171 -2.256 "C5'" 7LO 38 7LO "C4'" C16 C 0 1 N N R 4.294 -1.624 -0.034 -4.548 -0.303 -2.148 "C4'" 7LO 39 7LO "O4'" O15 O 0 1 N N N 5.621 -1.440 -0.537 -4.856 -0.629 -0.782 "O4'" 7LO 40 7LO "C3'" C17 C 0 1 N N R 3.373 -0.681 -0.802 -5.817 -0.568 -2.982 "C3'" 7LO 41 7LO "O3'" O16 O 0 1 N N N 2.814 0.300 0.084 -5.555 -1.539 -3.997 "O3'" 7LO 42 7LO "C2'" C18 C 0 1 N N R 4.233 -0.046 -1.885 -6.838 -1.118 -1.957 "C2'" 7LO 43 7LO "O2'" O17 O 0 1 N N N 4.083 1.376 -1.942 -7.587 -2.201 -2.511 "O2'" 7LO 44 7LO CM2 C19 C 0 1 N N N 2.985 1.796 -2.753 -8.863 -1.820 -3.029 CM2 7LO 45 7LO "C1'" C20 C 0 1 N N R 5.669 -0.420 -1.540 -5.912 -1.613 -0.811 "C1'" 7LO 46 7LO N9 N6 N 0 1 Y N N 6.395 -0.904 -2.743 -6.634 -1.634 0.463 N9 7LO 47 7LO N7 N7 N 1 1 Y N N 7.129 -2.218 -4.346 -7.386 -0.996 2.411 N7 7LO 48 7LO CBG C21 C 0 1 N N N 7.331 -3.429 -5.184 -7.629 -0.185 3.606 CBG 7LO 49 7LO C4 C22 C 0 1 Y N N 7.215 -0.171 -3.501 -7.432 -2.649 0.927 C4 7LO 50 7LO N3 N8 N 0 1 Y N N 7.643 1.121 -3.470 -7.804 -3.837 0.461 N3 7LO 51 7LO N2 N9 N 0 1 N N N 8.925 2.864 -4.378 -8.979 -5.843 0.645 N2 7LO 52 7LO N1 N10 N 0 1 Y N N 8.958 0.754 -5.410 -9.086 -4.250 2.350 N1 7LO 53 7LO H6 H1 H 0 1 N N N 9.610 -0.844 -7.038 -8.695 -2.990 4.845 H6 7LO 54 7LO H81 H2 H 0 1 N N N 5.763 -2.963 -2.857 -6.106 0.289 1.324 H81 7LO 55 7LO HBM H3 H 0 1 N N N -12.035 3.211 3.773 9.000 -6.519 -1.637 HBM 7LO 56 7LO H8P H4 H 0 1 N N N -10.479 2.463 0.689 8.095 -6.417 1.745 H8P 7LO 57 7LO HBN H5 H 0 1 N N N -11.945 2.986 1.450 8.724 -7.380 0.520 HBN 7LO 58 7LO HBI H6 H 0 1 N N N -6.277 1.615 6.308 7.013 -0.368 -1.719 HBI 7LO 59 7LO HBT H7 H 0 1 N N N -6.752 0.549 2.987 6.138 -2.161 1.519 HBT 7LO 60 7LO HBV H8 H 0 1 N N N -5.682 3.096 2.296 8.663 -0.548 1.101 HBV 7LO 61 7LO HBU H9 H 0 1 N N N -7.679 2.213 1.482 8.962 -1.358 3.328 HBU 7LO 62 7LO HBX H10 H 0 1 N N N -3.721 2.130 1.768 7.746 1.367 2.009 HBX 7LO 63 7LO HBW H11 H 0 1 N N N -3.738 0.413 0.191 8.113 0.351 4.166 HBW 7LO 64 7LO HBY H12 H 0 1 N N N -4.387 -0.699 2.274 5.088 0.038 2.564 HBY 7LO 65 7LO HBZ H13 H 0 1 N N N -2.735 -0.155 4.270 5.449 2.546 2.398 HBZ 7LO 66 7LO H8N H14 H 0 1 N N N -2.416 1.333 3.317 5.909 2.313 0.695 H8N 7LO 67 7LO H1 H15 H 0 1 N N N -0.671 -2.604 4.332 2.581 3.837 2.783 H1 7LO 68 7LO H2 H16 H 0 1 N N N -2.014 -0.003 -0.453 -0.585 5.041 1.759 H2 7LO 69 7LO H3 H17 H 0 1 N N N 0.847 -5.778 1.347 -3.302 3.540 0.274 H3 7LO 70 7LO H5V H18 H 0 1 N N N 3.606 -3.291 -1.220 -4.930 1.789 -1.805 H5V 7LO 71 7LO "H5'" H19 H 0 1 N N N 4.737 -3.732 0.104 -4.037 1.441 -3.305 "H5'" 7LO 72 7LO "H4'" H20 H 0 1 N N N 4.259 -1.355 1.032 -3.733 -0.932 -2.505 "H4'" 7LO 73 7LO "H3'" H21 H 0 1 N N N 2.572 -1.268 -1.276 -6.181 0.358 -3.427 "H3'" 7LO 74 7LO H8O H22 H 0 1 N N N 2.018 -0.042 0.474 -4.879 -1.270 -4.634 H8O 7LO 75 7LO "H2'" H23 H 0 1 N N N 3.972 -0.494 -2.855 -7.501 -0.327 -1.607 "H2'" 7LO 76 7LO H2V H24 H 0 1 N N N 2.928 2.894 -2.753 -9.369 -2.698 -3.431 H2V 7LO 77 7LO H2W H25 H 0 1 N N N 3.131 1.437 -3.782 -9.465 -1.388 -2.230 H2W 7LO 78 7LO HAI H26 H 0 1 N N N 2.050 1.380 -2.349 -8.729 -1.083 -3.821 HAI 7LO 79 7LO "H1'" H27 H 0 1 N N N 6.179 0.471 -1.145 -5.509 -2.600 -1.042 "H1'" 7LO 80 7LO H8L H28 H 0 1 N N N 6.737 -4.260 -4.777 -6.878 -0.418 4.362 H8L 7LO 81 7LO H8M H29 H 0 1 N N N 7.010 -3.219 -6.215 -7.567 0.872 3.347 H8M 7LO 82 7LO HBG H30 H 0 1 N N N 8.396 -3.704 -5.181 -8.621 -0.405 4.000 HBG 7LO 83 7LO H22 H31 H 0 1 N N N 9.551 3.036 -5.138 -8.641 -6.124 -0.220 H22 7LO 84 7LO H21 H32 H 0 1 N N N 8.136 3.473 -4.452 -9.573 -6.423 1.146 H21 7LO 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7LO O6 C6 SING N N 1 7LO C6 N1 DOUB Y N 2 7LO C6 C5 SING Y N 3 7LO N1 C2 SING Y N 4 7LO CBG N7 SING N N 5 7LO C5 N7 SING Y N 6 7LO C5 C4 DOUB Y N 7 7LO C2 N2 SING N N 8 7LO C2 N3 DOUB Y N 9 7LO N7 C8 DOUB Y N 10 7LO C4 N3 SING Y N 11 7LO C4 N9 SING Y N 12 7LO C8 N9 SING Y N 13 7LO CM2 "O2'" SING N N 14 7LO N9 "C1'" SING N N 15 7LO "O2'" "C2'" SING N N 16 7LO "C2'" "C1'" SING N N 17 7LO "C2'" "C3'" SING N N 18 7LO "C1'" "O4'" SING N N 19 7LO SEB PB SING N N 20 7LO "C3'" "C4'" SING N N 21 7LO "C3'" "O3'" SING N N 22 7LO OC2 PC DOUB N N 23 7LO OBC PB SING N N 24 7LO OBC PC SING N N 25 7LO "O4'" "C4'" SING N N 26 7LO "C5'" "C4'" SING N N 27 7LO "C5'" "O5'" SING N N 28 7LO PB OB DOUB N N 29 7LO PB OAB SING N N 30 7LO PC "O5'" SING N N 31 7LO PC OC1 SING N N 32 7LO O3P C3P SING N N 33 7LO O2P C2P SING N N 34 7LO OAB PA SING N N 35 7LO N2G C2G SING N N 36 7LO C3P C2P SING N N 37 7LO C3P C4P SING N N 38 7LO C2P C1P SING N N 39 7LO O5P PA SING N N 40 7LO O5P C5P SING N N 41 7LO PA OA2 DOUB N N 42 7LO PA OA1 SING N N 43 7LO C2G N3G DOUB N N 44 7LO C2G N1G SING N N 45 7LO C4P C5P SING N N 46 7LO C4P O4P SING N N 47 7LO N3G C4G SING N N 48 7LO C1P O4P SING N N 49 7LO C1P N9G SING N N 50 7LO N1G C6G SING N N 51 7LO C4G N9G SING Y N 52 7LO C4G C5G DOUB Y N 53 7LO N9G C8G SING Y N 54 7LO C6G C5G SING N N 55 7LO C6G O6G DOUB N N 56 7LO C5G N7G SING Y N 57 7LO C8G N7G DOUB Y N 58 7LO O6 H6 SING N N 59 7LO C8 H81 SING N N 60 7LO N1G HBM SING N N 61 7LO N2G H8P SING N N 62 7LO N2G HBN SING N N 63 7LO C8G HBI SING N N 64 7LO C1P HBT SING N N 65 7LO C2P HBV SING N N 66 7LO O2P HBU SING N N 67 7LO C3P HBX SING N N 68 7LO O3P HBW SING N N 69 7LO C4P HBY SING N N 70 7LO C5P HBZ SING N N 71 7LO C5P H8N SING N N 72 7LO OA1 H1 SING N N 73 7LO SEB H2 SING N N 74 7LO OC1 H3 SING N N 75 7LO "C5'" H5V SING N N 76 7LO "C5'" "H5'" SING N N 77 7LO "C4'" "H4'" SING N N 78 7LO "C3'" "H3'" SING N N 79 7LO "O3'" H8O SING N N 80 7LO "C2'" "H2'" SING N N 81 7LO CM2 H2V SING N N 82 7LO CM2 H2W SING N N 83 7LO CM2 HAI SING N N 84 7LO "C1'" "H1'" SING N N 85 7LO CBG H8L SING N N 86 7LO CBG H8M SING N N 87 7LO CBG HBG SING N N 88 7LO N2 H22 SING N N 89 7LO N2 H21 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7LO InChI InChI 1.03 ;InChI=1S/C22H31N10O17P3Se/c1-30-6-32(16-10(30)18(37)29-22(24)27-16)20-14(43-2)12(34)8(47-20)4-45-51(40,41)49-52(42,53)48-50(38,39)44-3-7-11(33)13(35)19(46-7)31-5-25-9-15(31)26-21(23)28-17(9)36/h5-8,11-14,19-20,33-35H,3-4H2,1-2H3,(H8-,23,24,26,27,28,29,36,37,38,39,40,41,42,53)/p+1/t7-,8-,11-,12-,13-,14-,19-,20-,52+/m1/s1 ; 7LO InChIKey InChI 1.03 LVNVABJMRYMPGM-DCILJVRDSA-O 7LO SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(=O)O[P@]([SeH])(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N)O[C@H]1n5c[n+](C)c6c(O)nc(N)nc56" 7LO SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(=O)O[P]([SeH])(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N)O[CH]1n5c[n+](C)c6c(O)nc(N)nc56" 7LO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[n+]1cn(c2c1c(nc(n2)N)O)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[P@](=O)(OP(=O)(O)OC[C@@H]4[C@H]([C@H](C(O4)n5cnc6c5N=C(NC6=O)N)O)O)[SeH])O)OC" 7LO SMILES "OpenEye OEToolkits" 2.0.6 "C[n+]1cn(c2c1c(nc(n2)N)O)C3C(C(C(O3)COP(=O)(O)OP(=O)(OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)[SeH])O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7LO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ;[[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanyl-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-selanyl-phosphoryl] [(2~{R},3~{S},4~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7LO "Create component" 2016-11-14 EBI 7LO "Initial release" 2017-12-20 RCSB #